Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0003019 PREDICTED: transcription initiation factor IIF subunit beta [Nicotiana sylvestris] Chr9 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G5750 LG-4 - View
Acer truncatum Atru.chr13.377 chr13 + View
Actinidia chinensis Actinidia22502 Lachesis_group28 + View
Actinidia chinensis Actinidia15378 Lachesis_group26 + View
Actinidia chinensis Actinidia29801 Lachesis_group27 + View
Arabidopsis lyrata AL2G35500 scaffold_2 - View
Avicennia marina MSTRG.25207 ScioBoG_4119_HRSCAF_4138 - View
Avicennia marina MSTRG.24270 ScioBoG_4088_HRSCAF_4107 + View
Amaranthus hybridus Ah.05g172080 AmaHy_arrow1_Scaffold_5 + View
Aquilegia oxysepala Aqoxy6G02437 CHR06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XW2FM5 PTHR10445//PTHR10445:SF2 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.UQ4UHV PTHR10445//PTHR10445:SF1 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.17 + View
Arabidopsis thaliana AT1G75510 Transcription initiation factor IIF, beta subunit Transcription initiation factor IIF%2C beta subunit%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C general RNA polymerase II transcription factor activity%2C catalytic activity%2C ATP binding%2C ATP-dependent helicase activity%3B INVOLVED IN: transcription initiation from RNA polymerase II promoter%2C transcription from RNA polymerase II promoter%3B LOCATED IN: mitochondrion%2C transcription factor TFIIF complex%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Transcription Factor IIF%2C Rap30/Rap74%2C interaction (InterPro:IPR011039)%2C Transcription initiation factor IIF%2C beta subunit (InterPro:IPR003196)%2C Transcription initiation factor IIF%2C beta subunit%2C subgroup (InterPro:IPR016640)%3B BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF%2C beta subunit (TAIR:AT3G52270.1)%3B Has 346 Blast hits to 346 proteins in 152 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 130%3B Fungi - 128%3B Plants - 70%3B Viruses - 0%3B Other Eukaryotes - 18 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC08g45571 ChrC08 + View
Brassica carinata BcaC08g47345 ChrC08 + View
Brassica carinata BcaB07g31992 ChrB07 - View
Brassica carinata BcaB02g07026 ChrB02 - View
Brassica carinata BcaC07g39599 ChrC07 - View
Brassica carinata BcaC03g15584 ChrC03 - View
Brassica carinata BcaB05g24915 ChrB05 - View
Brassica napus C02p32680 C02 - View
Brassica napus C06p32560 C06 + View
Brassica napus A02p19980 A02 - View
Brassica napus C05p18210 C05 - View
Brassica napus A07p28790 A07 + View
Brassica napus A06p15900 A06 - View
Brassica oleracea BolC6t38379H C6 + View
Brassica oleracea BolC5t30528H C5 - View
Brassica oleracea BolC2t09299H C2 - View
Brassica rapa BraA06t24701Z A06 - View
Brassica rapa BraA02t07037Z A02 - View
Brassica rapa BraA07t30523Z A07 + View
Beta vulgaris EL10Ac1g00569 PTHR10445//PTHR10445:SF1 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // SUBFAMILY NOT NAMED Chr1_EL10_PGA_scaffold3 + View
Cicer arietinum L. Ca_02066_v3 Ca_LG1_v3 + View
Corylus avellana Haze_22574 Protein of unknown function 3 - View
Coffea canephora Cc10_g02230 Putative Transcription initiation factor IIF subunit beta chr10 + View
Citrus clementina Ciclev10002202m.g scaffold_5 - View
Carpinus fangiana Cfa013895 Cfa05 - View
Cardamine hirsuta CARHR068910 Transcription initiation factor IIF, beta subunit Chr2 - View
Carya illinoinensis CiPaw.07G155000 PTHR10445//PTHR10445:SF1 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // SUBFAMILY NOT NAMED Chr07 + View
Citrullus lanatus ClCG08G014620 General transcription factor IIF subunit 2 CG_Chr08 + View
Cucumis melo MELO3C010981.2 transcription initiation factor IIF subunit beta-like chr03 - View
Carica papaya Cpa.g.sc140.6 supercontig_140 - View
Chenopodium quinoa AUR62014448 tfg2: Transcription initiation factor IIF subunit beta C_Quinoa_Scaffold_1566 + View
Chenopodium quinoa AUR62034549 tfg2: Transcription initiation factor IIF subunit beta C_Quinoa_Scaffold_1522 - View
Capsella rubella Carub.0002s2237 K03139 - transcription initiation factor TFIIF subunit beta (TFIIF2, GTF2F2, TFG2) scaffold_2 - View
Cucumis sativus L. CsaV3_2G029190 general transcription factor IIF subunit 2-like chr2 + View
Daucus carota DCAR_009952 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv31803 GWHABJS00000002 - View
Durio zibethinus Duzib116G0790 NW_019167949.1 + View
Durio zibethinus Duzib093G1845 NW_019167937.1 - View
Durio zibethinus Duzib041G0666 NW_019167826.1 + View
Erigeron canadensis ECA247G2772 Conyza_canadensis_scaffold:7 + View
Eucalyptus grandis Eucgr.F01846 Chr06 + View
Erythranthe guttata Migut.N03121 scaffold_14 - View
Erythranthe guttata Migut.C00782 scaffold_3 - View
Eutrema salsugineum Thhalv10019027m.g K03139 - transcription initiation factor TFIIF subunit beta (TFIIF2, GTF2F2, TFG2) scaffold_9 + View
Eutrema salsugineum Thhalv10008477m.g K03139 - transcription initiation factor TFIIF subunit beta (TFIIF2, GTF2F2, TFG2) scaffold_5 + View
Fragaria x ananassa FAN20G3046 PTHR10445//PTHR10445:SF2 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT Fvb2-3 + View
Fragaria x ananassa FAN27G1925 K03139 - transcription initiation factor TFIIF subunit beta (TFIIF2, GTF2F2, TFG2) Fvb2-1 - View
Fragaria x ananassa FAN15G1864 PTHR10445//PTHR10445:SF1 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // SUBFAMILY NOT NAMED Fvb2-4 + View
Fragaria vesca FvH4_2g38930 K03139 - transcription initiation factor TFIIF subunit beta (TFIIF2, GTF2F2, TFG2) Fvb2 - View
Gossypium hirsutum Gohir.A05G258000 PTHR10445//PTHR10445:SF2 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT A05 + View
Gossypium hirsutum Gohir.A01G113500 PTHR10445//PTHR10445:SF1//PTHR10445:SF2 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // SUBFAMILY NOT NAMED // TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT A01 + View
Gossypium hirsutum Gohir.D05G259400 PTHR10445//PTHR10445:SF2 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT D05 + View
Glycine max Glyma.04G027700 K03139 - transcription initiation factor TFIIF subunit beta (TFIIF2, GTF2F2, TFG2) Gm04 + View
Glycine max Glyma.06G027900 K03139 - transcription initiation factor TFIIF subunit beta (TFIIF2, GTF2F2, TFG2) Gm06 + View
Gossypium raimondii Gorai.002G125800 Chr02 + View
Gossypium raimondii Gorai.009G271200 Chr09 + View
Helianthus annuus HanXRQChr16g0501411 Probable transcription initiation factor IIF, beta subunit HanXRQChr16 + View
Hydrangea macrophylla Hma1.2p1_1386F.1_g279890 Hma1.2p1_1386F.1 + View
Lupinus albus Lalb_Chr23g0266351 PTHR10445//PTHR10445:SF1 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // SUBFAMILY NOT NAMED Lalb_Chr23 + View
Lotus japonicus Lj1g0001366 PTHR10445//PTHR10445:SF1 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // SUBFAMILY NOT NAMED chr1 + View
Lonicera japonica Lj4A790G57 GWHAAZE00000004 - View
Lonicera japonica Lj4A31T87 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_1_16480 PTHR10445//PTHR10445:SF1 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // SUBFAMILY NOT NAMED Lsat_1_v8_lg_1 + View
Malus domestica MD15G1019500 Transcription initiation factor IIF Chr15 + View
Malus domestica MD08G1022300 Transcription initiation factor IIF Chr08 + View
Manihot esculenta Manes.05G153300 Chromosome05 + View
Medicago truncatula Medtr3g112490 transcription initiation factor IIF beta subunit chr3 - View
Olea europaea Oeu046234.2 chr10 + View
Olea europaea Oeu030403.2 chr14 + View
Punica granatum PGR031G1279 NC_045127.1 + View
Prunus persica Prupe.1G371700 PTHR10445//PTHR10445:SF1 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // SUBFAMILY NOT NAMED Pp01 + View
Papaver somniferum PSO675G5473 NC_039358.1 - View
Papaver somniferum PSO541G0797 NC_039363.1 - View
Populus trichocarpa Potri.002G028900 K03139 - transcription initiation factor TFIIF subunit beta (TFIIF2, GTF2F2, TFG2) Chr02 + View
Populus trichocarpa Potri.005G233800 K03139 - transcription initiation factor TFIIF subunit beta (TFIIF2, GTF2F2, TFG2) Chr05 - View
Phaseolus vulgaris Phvul.009G013500 K03139 - transcription initiation factor TFIIF subunit beta (TFIIF2, GTF2F2, TFG2) Chr09 - View
Quercus lobata QL02p010502 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr6g0302021 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim06G0027200 chr06 + View
Striga asiatica SGA_v2.0_scaffold162G37917 scaffold162 - View
Striga asiatica SGA_v2.0_scaffold326G48741 scaffold326 - View
Salvia bowleyana SalBow8G2127 GWHASIU00000004 + View
Salix brachista Sabra02G0023000 GWHAAZH00000002 + View
Salix brachista Sabra05G0180300 GWHAAZH00000005 - View
Simmondsia chinensis Sc26g0003330 GWHAASQ00000026 + View
Sechium edule Sed0009290 LG03 + View
Sechium edule Sed0001194 LG11 + View
Solanum lycopersicum Solyc10g054400.1 Transcription initiation factor IIF, beta subunit (AHRD V3.3 *** A0A2U1P1S9_ARTAN) SL4.0ch10 - View
Schrenkiella parvula Sp5g30640 K03139 - transcription initiation factor TFIIF subunit beta (TFIIF2, GTF2F2, TFG2) ch5-7 - View
Solanum pennellii Sopen10g024260 Transcription initiation factor IIF, beta subunit | FUNCTIONS IN: RNA polymerase II transcription factor activity, catalytic activity, ATP binding | INVOLVED IN: transcription initiation from RNA polymerase II promoter | LOCATED IN: transcription factor TFIIF complex | EXPRESSED IN: 9 plant structures | EXPRESSED DURING: M germinated pollen stage, 4 anthesis, F mature embryo stage, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , Transcription Factor IIF, Rap30/Rap74, interaction , Transcription initiation factor IIF, beta subunit | BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF, beta subunit Spenn-ch10 - View
Solanum tuberosum PGSC0003DMG400026670 Transcription initiation factor IIF subunit beta ST4.03ch10 - View
Selenicereus undatus Hund17207 Scaffold_33675 - View
Trochodendron aralioides TAR376G0689 group14 - View
Theobroma cacao Thecc.08G036200 JHL18I08.10 protein Chromosome_8 - View
Tarenaya hassleriana THA.LOC104811402 transcription initiation factor IIF subunit beta NW_010965372.1 + View
Trifolium pratense TPR.G12433 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI56G0427 NC_052242.1 + View
Vaccinium macrocarpon vmacro21694 Similar to tfg2: Transcription initiation factor IIF subunit beta (Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX%3D284812) chr10_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1309G2730 CM024072.1 - View
Vitis vinifera GSVIVG01009806001 chr18 - View