Gene: AT1G75510

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G75510
  • Transcript Identifier AT1G75510.1
  • Gene Type Coding gene
  • Location Chr1 : 28347254-28348629 : negative

Gene Family Information

  • ID HOM05D002519
  • #Genes/#Species 269/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G75510.1
  • uniprot Q9LQZ4

Descriptions

  • Description Transcription initiation factor IIF, beta subunit
  • Computational description Transcription initiation factor IIF, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter; LOCATED IN: mitochondrion, transcription factor TFIIF complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039), Transcription initiation factor IIF, beta subunit (InterPro:IPR003196), Transcription initiation factor IIF, beta subunit, subgroup (InterPro:IPR016640); BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF, beta subunit (TAIR:AT3G52270.1); Has 346 Blast hits to 346 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 128; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006367
IEA
GOA Databasetranscription initiation from RNA polymerase II promoter
GO:0006367
IBA
Gene Ontologytranscription initiation from RNA polymerase II promoter1
GO:0006367
IEA
InterProtranscription initiation from RNA polymerase II promoter
GO:0006413
IEA
GOA Databasetranslational initiation
GO:0006366
IEA
GOA Databasetranscription by RNA polymerase II
GO:0006366
IEA
InterProtranscription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003743
IEA
GOA Databasetranslation initiation factor activity
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005739
IDA
GOA Databasemitochondrion
GO:0005739
HDA
Gene Ontologymitochondrion2
GO:0005829
RCA
Gene Ontologycytosol3
GO:0005674
IEA
GOA Databasetranscription factor TFIIF complex
GO:0005674
IBA
Gene Ontologytranscription factor TFIIF complex1
GO:0005674
IEA
InterProtranscription factor TFIIF complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR040450 TFIIF beta subunit, HTH domain
IPR003196 Transcription initiation factor IIF, beta subunit
IPR011039 Transcription Factor IIF, Rap30/Rap74, interaction
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR036390 Winged helix DNA-binding domain superfamily
Mapman id Description
15.3.3.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit beta