Gene: Lsat_1_v5_gn_1_16480
General Information
Structural Information
- Species Lactuca sativa
- Gene Identifier Lsat_1_v5_gn_1_16480
- Transcript Identifier Lsat_1_v5_gn_1_16480.1
- Gene Type Coding gene
- Location Lsat_1_v8_lg_1 : 18985264-18986947 : positive
Gene Family Information
- ID HOM05D002519
- #Genes/#Species 269/97
- Phylogenetic origin
- ID ORTHO05D002747
- #Genes/#Species 265/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Lsat_1_v5_gn_1_16480.v5
- pacid 38943840
Descriptions
- Description PTHR10445//PTHR10445:SF1 - GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 // SUBFAMILY NOT NAMED
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006367 | IEA | InterPro | transcription initiation from RNA polymerase II promoter | |
| GO:0006366 | IEA | InterPro | transcription by RNA polymerase II |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005674 | IEA | InterPro | transcription factor TFIIF complex | |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT1G75510 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011039 | Transcription Factor IIF, Rap30/Rap74, interaction |
| IPR040450 | TFIIF beta subunit, HTH domain |
| IPR040504 | TFIIF, beta subunit, N-terminal |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR003196 | Transcription initiation factor IIF, beta subunit |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 15.3.3.4.2 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit beta |