Gene: Solyc10g054400.1

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc10g054400.1
  • Transcript Identifier Solyc10g054400.1.1
  • Gene Type Coding gene
  • Location SL4.0ch10 : 54322402-54323232 : negative

Gene Family Information

  • ID HOM05D002519
  • #Genes/#Species 269/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc10g054400.1.1
  • uniprot A0A3Q7II19
  • gene_id Solyc10g054400

Descriptions

  • Description Transcription initiation factor IIF, beta subunit (AHRD V3.3 *** A0A2U1P1S9_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006367
IBA
IEA
GOA Databasetranscription initiation from RNA polymerase II promoter
GO:0006367
IEA
InterProtranscription initiation from RNA polymerase II promoter
GO:0006366
IEA
GOA Databasetranscription by RNA polymerase II
GO:0006366
IEA
InterProtranscription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005674
IBA
IEA
GOA Databasetranscription factor TFIIF complex
GO:0005674
IEA
InterProtranscription factor TFIIF complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036390 Winged helix DNA-binding domain superfamily
IPR011039 Transcription Factor IIF, Rap30/Rap74, interaction
IPR003196 Transcription initiation factor IIF, beta subunit
IPR040450 TFIIF beta subunit, HTH domain
IPR036388 Winged helix-like DNA-binding domain superfamily
Mapman id Description
15.3.3.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit beta