Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0047502 PREDICTED: transcriptional activator DEMETER isoform X1 [Vitis vinifera] Chr1 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G21680 LG-5 - View
Arabidopsis lyrata AL4G32670 scaffold_4 - View
Avicennia marina MSTRG.21064 ScioBoG_26769_HRSCAF_26899 - View
Avicennia marina MSTRG.9109 ScioBoG_11560_HRSCAF_11609 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.66FLD0 PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER arahy.Tifrunner.gnm1.Arahy.19 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.CUT3DD PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER arahy.Tifrunner.gnm1.Arahy.09 + View
Arabidopsis thaliana AT2G36490 demeter-like 1 A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. In the ros1 mutants%2C an increase in methylation is observed in a number of gene promoters. Among the loci affected by ros1%2C a few (RD29A and At1g76930) are affected in cytosine methylation in all sequence contexts (CpG%2C CpNpG or CpNpN)%2C although many others are affected primarily in non-CpG contexts. demeter-like 1 (DML1)%3B FUNCTIONS IN: protein binding%2C DNA N-glycosylase activity%2C DNA-(apurinic or apyrimidinic site) lyase activity%3B INVOLVED IN: DNA repair%2C chromatin silencing%2C negative regulation of chromatin silencing%2C DNA methylation%2C DNA demethylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C Endonuclease III-like%2C iron-sulphur cluster loop motif (InterPro:IPR003651)%2C HhH-GPD domain (InterPro:IPR003265)%3B BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT5G04560.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr2 - View
Cannabis sativa CANSAT56G1981 NC_044371.1 - View
Corylus avellana Haze_02614 Similar to DME: Transcriptional activator DEMETER (Arabidopsis thaliana OX%3D3702) 1 - View
Citrus clementina Ciclev10030474m.g scaffold_4 - View
Carpinus fangiana Cfa011221 Cfa04 + View
Carpinus fangiana Cfa010084 Cfa04 - View
Cardamine hirsuta CARHR130800 DNA glycosylase Chr4 - View
Carya illinoinensis CiPaw.13G036100 PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER Chr13 + View
Carya illinoinensis CiPaw.14G028400 PTHR10359:SF28 - TRANSCRIPTIONAL ACTIVATOR DEMETER Chr14 + View
Citrullus lanatus ClCG02G021910 DEMETER CG_Chr02 + View
Cucumis melo MELO3C024516.2 protein ROS1 chr08 - View
Cucumis melo MELO3C009432.2 protein ROS1 chr04 - View
Chenopodium quinoa AUR62033581 DME: Transcriptional activator DEMETER C_Quinoa_Scaffold_1776 - View
Capsella rubella Carub.0004s1830 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED scaffold_4 - View
Cucumis sativus L. CsaV3_5G035660 transcriptional activator DEMETER isoform X1 chr5 - View
Davidia involucrata Dinv20843 GWHABJS00000009 + View
Davidia involucrata Dinv30660 GWHABJS00000004 - View
Eucalyptus grandis Eucgr.J00426 Chr10 + View
Eucalyptus grandis Eucgr.J01016 Chr10 - View
Erythranthe guttata Migut.F00888 scaffold_6 + View
Eutrema salsugineum Thhalv10016139m.g PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED scaffold_10 - View
Glycine max Glyma.10G202150 PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER Gm10 + View
Glycine max Glyma.20G188300 PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER Gm20 - View
Lonicera japonica Lj3A932G50 GWHAAZE00000003 + View
Lactuca sativa Lsat_1_v5_gn_2_102681 3.2.2.27 - Uracil-DNA glycosylase / Uracil-DNA N-glycosylase Lsat_1_v8_lg_2 + View
Manihot esculenta Manes.07G091800 Chromosome07 - View
Medicago truncatula Medtr1g492760 HhH-GPD base excision DNA repair family protein chr1 + View
Medicago truncatula Medtr2g084845 HhH-GPD base excision DNA repair family protein, putative chr2 + View
Olea europaea Oeu050180.1 chr16 + View
Olea europaea Oeu059852.1 chr13 - View
Oryza sativa ssp. japonica Os05g0445900 5-methylcytosine DNA glycosylase/lyase, Demethylation of retrotransposon Tos17, Promotion of Tos17 transposition, Seed development 5-methylcytosine DNA glycosylase/lyase chr05 - View
Punica granatum PGR119G1632 NC_045132.1 - View
Populus trichocarpa Potri.010G234400 PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER Chr10 + View
Populus trichocarpa Potri.008G025900 PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER Chr08 - View
Salvia bowleyana SalBow6G6340 GWHASIU00000002 - View
Salix brachista Sabra10G0181700 GWHAAZH00000010 + View
Salix brachista Sabra08G0017600 GWHAAZH00000008 - View
Simmondsia chinensis Sc02g0001140 GWHAASQ00000002 - View
Solanum lycopersicum Solyc11g007580.3 DNA demethylase 3 SL4.0ch11 - View
Schrenkiella parvula Sp4g18800 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED ch4-6 - View
Solanum pennellii Sopen11g003420 Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. | DEMETER (DME) | CONTAINS InterPro DOMAIN/s: DNA glycosylase , Endonuclease III-like, iron-sulphur cluster loop motif , HhH-GPD domain | BEST Arabidopsis thaliana protein match is: demeter-like 1 Spenn-ch11 - View
Trochodendron aralioides TAR633G1723 group2 - View
Theobroma cacao Thecc.10G101300 DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase Chromosome_10 + View
Tripterygium wilfordii TWI53G2113 NC_052244.1 - View
Vigna mungo VMungo0720G0845 CM024071.1 + View