Functional clusters

Information

  • Type MapMan
  • Description Cellular respiration.oxidative phosphorylation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 1 CH_amhyb_25 11 80 0.00000000523955
Arachis hypogaea arahy.Tifrunner.gnm1.scaffold_22 1 CH_arhy_22 19 77 3.88782e-24
Arachis hypogaea arahy.Tifrunner.gnm1.scaffold_22 1 CH_arhy_222 10 80 0.0000000754544
Arabidopsis thaliana ChrM 1 CH_ath_11 14 72 4.49033e-19
Arabidopsis thaliana ChrM 1 CH_ath_17 13 79 1.99058e-16
Arabidopsis thaliana Chr2 1 CH_ath_378 6 65 0.000461682
Brassica napus A04 1 CH_bna_133 8 22 0.00000000362413
Brassica napus C01 1 CH_bna_270 7 24 0.000000915681
Brassica oleracea C1 1 CH_bol_118 7 22 0.000000304834
Brassica oleracea Boleracea_scaffold_28 1 CH_bol_4 22 80 9.1309e-29
Brassica rapa Brapa_scaffold_48 1 CH_bra_10 16 66 2.07639e-17
Brassica rapa Brapa_scaffold_48 1 CH_bra_18 15 73 0.00000000000000636768
Brassica rapa Brapa_scaffold_54 1 CH_bra_251 6 24 0.00017597
Cannabis sativa NC_029855.1 1 CH_cansat_5 18 44 1.72917e-28
Ceratophyllum demersum 1 1 CH_cde_136 8 68 0.000173628
Cardamine hirsuta ChrM 1 CH_chi_19 16 80 1.218e-17
Daucus carota DCARv2_MT 1 CH_dca_5 18 32 3.35052e-30
Davidia involucrata GWHABJS00000230 1 CH_din_112 9 61 0.0000000562808
Erigeron canadensis Conyza_canadensis_unscaffolded:263 1 CH_eca_135 7 30 0.0000000934235
Eutrema salsugineum scaffold_11 1 CH_esa_219 5 15 0.000224958
Helianthus annuus HanXRQMT 1 CH_han_9 19 42 3.92778e-29
Lupinus albus Lalb_Chr00c21 1 CH_lal_165 7 35 0.0000313533
Lupinus albus Lalb_Chr00c24 1 CH_lal_45 10 32 0.0000000000459887
Lotus japonicus Contig00315 1 CH_lja_17 12 28 4.82218e-17
Lotus japonicus Contig00439 1 CH_lja_24 12 35 0.00000000000000128671
Lonicera japonica GWHAAZE00000002 1 CH_lonja_21 17 73 2.20612e-23
Magnolia biondii Chr05 1 CH_mbi_273 6 28 0.0000105002
Nelumbo nucifera chr1 1 CH_nnu_50 11 76 0.000000000141572
Nelumbo nucifera chr1 1 CH_nnu_69 10 73 0.00000000472502
Punica granatum NW_022204095.1 1 CH_pgr_55 8 17 0.0000000000508723
Populus trichocarpa Chr07 1 CH_ptr_117 10 50 0.000000000787556
Rosa chinensis RcHm_v2.0_MT 1 CH_rch_39 16 75 2.37288e-20
Rhododendron simsii Mt 1 CH_rsi_72 10 36 0.00000000000287423
Salvia bowleyana GWHASIU00000001 1 CH_sbo_57 10 38 0.000000000000393372
Salix brachista GWHAAZH00000020 1 CH_sbr_186 8 68 0.000011408
Solanum lycopersicum SL4.0ch00 1 CH_sly_195 9 66 0.000000836944
Solanum lycopersicum SL4.0ch00 1 CH_sly_87 12 76 0.0000000000569753
Schrenkiella parvula ch3-4 1 CH_spa_47 10 40 0.000000000109495
Utricularia gibba unitig_87 1 CH_ugi_91 8 59 0.00000321972
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 2 CH_amhyb_25 11 80 0.00000000523955
Arachis hypogaea arahy.Tifrunner.gnm1.scaffold_22 2 CH_arhy_22 19 77 3.88782e-24
Arachis hypogaea arahy.Tifrunner.gnm1.scaffold_22 2 CH_arhy_222 10 80 0.0000000754544
Arabidopsis thaliana ChrM 2 CH_ath_11 14 72 4.49033e-19
Arabidopsis thaliana ChrM 2 CH_ath_17 13 79 1.99058e-16
Arabidopsis thaliana Chr2 2 CH_ath_378 6 65 0.000461682
Brassica oleracea C1 2 CH_bol_118 7 22 0.000000304834
Brassica oleracea Boleracea_scaffold_28 2 CH_bol_4 22 80 9.1309e-29
Brassica rapa Brapa_scaffold_48 2 CH_bra_10 16 66 2.07639e-17
Brassica rapa Brapa_scaffold_48 2 CH_bra_18 15 73 0.00000000000000636768
Brassica rapa Brapa_scaffold_54 2 CH_bra_251 6 24 0.00017597
Cannabis sativa NC_029855.1 2 CH_cansat_5 18 44 1.72917e-28
Ceratophyllum demersum 1 2 CH_cde_136 8 68 0.000173628
Cardamine hirsuta ChrM 2 CH_chi_19 16 80 1.218e-17
Daucus carota DCARv2_MT 2 CH_dca_5 18 32 3.35052e-30
Davidia involucrata GWHABJS00000230 2 CH_din_112 9 61 0.0000000562808
Erigeron canadensis Conyza_canadensis_unscaffolded:263 2 CH_eca_135 7 30 0.0000000934235
Eutrema salsugineum scaffold_11 2 CH_esa_219 5 15 0.000224958
Helianthus annuus HanXRQMT 2 CH_han_9 19 42 3.92778e-29
Lupinus albus Lalb_Chr00c21 2 CH_lal_165 7 35 0.0000313533
Lupinus albus Lalb_Chr00c24 2 CH_lal_45 10 32 0.0000000000459887
Lotus japonicus Contig00315 2 CH_lja_17 12 28 4.82218e-17
Lotus japonicus Contig00439 2 CH_lja_24 12 35 0.00000000000000128671
Lonicera japonica GWHAAZE00000002 2 CH_lonja_21 17 73 2.20612e-23
Magnolia biondii Chr05 2 CH_mbi_273 6 28 0.0000105002
Nelumbo nucifera chr1 2 CH_nnu_50 11 76 0.000000000141572
Nelumbo nucifera chr1 2 CH_nnu_69 10 73 0.00000000472502
Punica granatum NW_022204095.1 2 CH_pgr_55 8 17 0.0000000000508723
Populus trichocarpa Chr07 2 CH_ptr_117 10 50 0.000000000787556
Rosa chinensis RcHm_v2.0_MT 2 CH_rch_39 16 75 2.37288e-20
Rhododendron simsii Mt 2 CH_rsi_72 10 36 0.00000000000287423
Salvia bowleyana GWHASIU00000001 2 CH_sbo_57 10 38 0.000000000000393372
Salix brachista GWHAAZH00000020 2 CH_sbr_186 8 68 0.000011408
Solanum lycopersicum SL4.0ch00 2 CH_sly_195 9 66 0.000000836944
Solanum lycopersicum SL4.0ch00 2 CH_sly_87 12 76 0.0000000000569753
Schrenkiella parvula ch3-4 2 CH_spa_47 10 40 0.000000000109495
Utricularia gibba unitig_87 2 CH_ugi_91 8 59 0.00000321972

Available child term results

Ontology identifier Description Number of clusters
2.4.1.1.1 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module N (electron input).component NQO1 2
2.4.1.1.2 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module N (electron input).component NQO2 4
2.4.1.1.3 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module N (electron input).component NQO3 8
2.4.1.2.2 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module Q (electron output).component NQO5 2
2.4.1.3 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module P (proton translocation) 2
2.4.1.3.5 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module P (proton translocation).component ND4L/NQO11 2
2.4.1.3.6 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module P (proton translocation).component ND5/NQO12 2
2.4.1.3.7 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module P (proton translocation).component ND6/NQO10 2
2.4.1.4.1.1 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA1 8
2.4.1.4.1.10 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA13 6
2.4.1.4.1.2 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA2 6
2.4.1.4.1.4 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA5 11
2.4.1.4.1.5 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA6 11
2.4.1.4.1.6 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA7 6
2.4.1.4.1.7 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA8 4
2.4.1.4.1.8 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA9 2
2.4.1.4.1.9 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA12 4
2.4.1.4.10 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.carbonic anhydrase component (gamma-CA) 10
2.4.1.4.2.1 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB1 2
2.4.1.4.2.2 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB2 2
2.4.1.4.2.4 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB4 8
2.4.1.4.2.5 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB7 10
2.4.1.4.2.6 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB8 6
2.4.1.4.2.7 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB9 2
2.4.1.4.2.8 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB10 2
2.4.1.4.2.9 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB11 4
2.4.1.4.3 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component NduFS4 4
2.4.1.4.4 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component NduFS5 2
2.4.1.4.5 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component NduFS6 2
2.4.1.4.6 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component NDUFC1 2
2.4.1.4.7 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component NDUFC2 8
2.4.1.4.8 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component P1 8
2.4.1.5.1 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.assembly.assembly factor (CIAF1) 5
2.4.2.1.1 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NAD(P)H dehydrogenase (NDA) 5
2.4.2.1.2 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NAD(P)H dehydrogenase (NDB) 65
2.4.2.1.3 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NAD(P)H dehydrogenase (NDC) 8
2.4.2.2 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.alternative oxidase (AOx) 73
2.4.2.3 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.mitochondrial uncoupling protein (PUMP) 4
2.4.3 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex 2
2.4.3.2 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component cytochrome c1 10
2.4.3.4 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.Rieske iron-sulphur component UCR1 44
2.4.3.5 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component QCR6 12
2.4.3.6 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component QCR7 6
2.4.3.7 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component QCR8 2
2.4.3.8 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component QCR9 8
2.4.3.9 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component QCR10 4
2.4.4.1 Cellular respiration.oxidative phosphorylation.cytochrome c.cytochrome c protein 17
2.4.4.2 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I) 8
2.4.4.2.1.1 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I).CcmABC complex.ATP-binding component CcmA 14
2.4.4.2.2 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I).heme chaperone (CcmE) 4
2.4.4.2.3 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I).apocytochrome-heme assembly complex 2
2.4.4.2.3.2 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I).apocytochrome-heme assembly complex.component CcmFn 4
2.4.4.2.3.3 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I).apocytochrome-heme assembly complex.component CcmH 4
2.4.5.1.2 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.core components.component COX2 2
2.4.5.1.4 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.core components.component COX5b 26
2.4.5.1.5 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.core components.component COX5c 2
2.4.5.1.6 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.core components.component COX6a 2
2.4.5.1.7 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.core components.component COX6b 8
2.4.5.2.3 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.component COX15 8
2.4.5.2.4 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.component COX16 5
2.4.5.2.5 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.component COX17 4
2.4.5.2.6 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.membrane insertase component COX18/Oxa1 15
2.4.5.2.7 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.component COX19 4
2.4.5.2.8 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.component SURF1 11
2.4.5.2.9 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.metallochaperone component HCC/SCO1 5
2.4.6.1 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex 4
2.4.6.1.2 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit b 2
2.4.6.1.3 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit c 6
2.4.6.1.4 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit d 14
2.4.6.1.5 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit g 12
2.4.6.1.7 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit ATP6 10
2.4.6.2.2 Cellular respiration.oxidative phosphorylation.ATP synthase complex.peripheral MF1 subcomplex.subunit beta 43
2.4.6.2.3 Cellular respiration.oxidative phosphorylation.ATP synthase complex.peripheral MF1 subcomplex.subunit gamma 8
2.4.6.2.4 Cellular respiration.oxidative phosphorylation.ATP synthase complex.peripheral MF1 subcomplex.subunit delta/OSCP 4
2.4.6.2.5 Cellular respiration.oxidative phosphorylation.ATP synthase complex.peripheral MF1 subcomplex.subunit delta_ 16
2.4.6.2.6 Cellular respiration.oxidative phosphorylation.ATP synthase complex.peripheral MF1 subcomplex.subunit epsilon 2
2.4.6.3.1 Cellular respiration.oxidative phosphorylation.ATP synthase complex.assembly.chaperone (ATP10) 8
2.4.6.3.2 Cellular respiration.oxidative phosphorylation.ATP synthase complex.assembly.chaperone (ATP11) 2
2.4.6.3.3 Cellular respiration.oxidative phosphorylation.ATP synthase complex.assembly.chaperone (ATP12) 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001