Functional clusters

Information

  • Type MapMan
  • Description Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.alternative oxidase (AOx)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 1 CH_acertr_146 3 5 0.000000298163
Arabidopsis lyrata scaffold_3 1 CH_aly_424 2 2 0.000660044
Arabidopsis thaliana Chr3 1 CH_ath_431 2 3 0.000859439
Chara braunii BFEA01000275 1 CH_cbr_132 2 3 0.000647303
Citrus clementina scaffold_5 1 CH_ccl_403 2 2 0.000246093
Capsella rubella scaffold_3 1 CH_cru_425 2 2 0.000731154
Davidia involucrata GWHABJS00000002 1 CH_din_428 2 2 0.000300075
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_461 2 2 0.000448722
Eutrema salsugineum scaffold_13 1 CH_esa_283 2 2 0.000456899
Fragaria x ananassa Fvb4-4 1 CH_fan_550 2 2 0.000518101
Fragaria x ananassa Fvb4-2 1 CH_fan_551 2 2 0.000518101
Fragaria vesca Fvb4 1 CH_fve_435 2 3 0.000530165
Glycine max Gm08 1 CH_gma_457 2 2 0.000227734
Gossypium raimondii Chr05 1 CH_gra_364 2 2 0.000321664
Hydrangea macrophylla Hma1.2p1_0199F.1 1 CH_hma_363 2 2 0.000333259
Lonicera japonica GWHAAZE00000007 1 CH_lonja_485 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_482 2 3 0.000462586
Nelumbo nucifera chr3 1 CH_nnu_118 3 6 0.000000570246
Oryza sativa ssp. japonica chr04 1 CH_osa_322 2 2 0.000316874
Petunia axillaris Peaxi162Scf00053 1 CH_pax_314 2 2 0.000422134
Punica granatum NC_045130.1 1 CH_pgr_47 4 4 0.00000000000633786
Prunus persica Pp01 1 CH_ppe_209 3 6 0.000000667646
Populus trichocarpa Chr12 1 CH_ptr_446 2 2 0.000346801
Phaseolus vulgaris Chr02 1 CH_pvu_365 2 2 0.000220418
Quercus lobata 11 1 CH_qlo_820 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_789 2 3 0.000717541
Solanum lycopersicum SL4.0ch08 1 CH_sly_486 2 2 0.000352164
Schrenkiella parvula ch3-1 1 CH_spa_260 2 2 0.000472404
Solanum pennellii Spenn-ch08 1 CH_spe_441 2 2 0.000266874
Solanum tuberosum ST4.03ch08 1 CH_stu_524 2 2 0.000307472
Tripterygium wilfordii NC_052234.1 1 CH_twi_290 2 2 0.000557507
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_375 2 2 0.000557543
Vanilla planifolia CM028150.1 1 CH_vpl_268 2 2 0.000221664
Vitis vinifera chr2 1 CH_vvi_413 2 3 0.000684523
Zea mays 2 1 CH_zma_57 3 3 0.0000000156868
Acer truncatum chr6 2 CH_acertr_146 3 5 0.000000298163
Arabidopsis lyrata scaffold_3 2 CH_aly_424 2 2 0.000660044
Arabidopsis thaliana Chr3 2 CH_ath_431 2 3 0.000859439
Chara braunii BFEA01000275 2 CH_cbr_132 2 3 0.000647303
Citrus clementina scaffold_5 2 CH_ccl_403 2 2 0.000246093
Capsella rubella scaffold_3 2 CH_cru_425 2 2 0.000731154
Davidia involucrata GWHABJS00000002 2 CH_din_428 2 2 0.000300075
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_461 2 2 0.000448722
Eucalyptus grandis Chr05 2 CH_egr_473 3 5 0.000000205513
Eutrema salsugineum scaffold_13 2 CH_esa_283 2 2 0.000456899
Fragaria x ananassa Fvb4-4 2 CH_fan_550 2 2 0.000518101
Fragaria x ananassa Fvb4-2 2 CH_fan_551 2 2 0.000518101
Fragaria vesca Fvb4 2 CH_fve_435 2 3 0.000530165
Gossypium hirsutum A03 2 CH_ghi_842 2 2 0.000747644
Gossypium hirsutum D02 2 CH_ghi_843 2 2 0.000747644
Glycine max Gm08 2 CH_gma_457 2 2 0.000227734
Gossypium raimondii Chr05 2 CH_gra_364 2 2 0.000321664
Hydrangea macrophylla Hma1.2p1_0199F.1 2 CH_hma_363 2 2 0.000333259
Lonicera japonica GWHAAZE00000007 2 CH_lonja_485 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_482 2 3 0.000462586
Nelumbo nucifera chr3 2 CH_nnu_118 3 6 0.000000570246
Oryza sativa ssp. japonica chr04 2 CH_osa_322 2 2 0.000316874
Petunia axillaris Peaxi162Scf00053 2 CH_pax_314 2 2 0.000422134
Punica granatum NC_045130.1 2 CH_pgr_47 4 4 0.00000000000633786
Prunus persica Pp01 2 CH_ppe_209 3 6 0.000000667646
Populus trichocarpa Chr12 2 CH_ptr_446 2 2 0.000346801
Phaseolus vulgaris Chr02 2 CH_pvu_365 2 2 0.000220418
Quercus lobata 11 2 CH_qlo_820 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_789 2 3 0.000717541
Solanum lycopersicum SL4.0ch08 2 CH_sly_486 2 2 0.000352164
Schrenkiella parvula ch3-1 2 CH_spa_260 2 2 0.000472404
Solanum pennellii Spenn-ch08 2 CH_spe_441 2 2 0.000266874
Solanum tuberosum ST4.03ch08 2 CH_stu_524 2 2 0.000307472
Tripterygium wilfordii NC_052234.1 2 CH_twi_290 2 2 0.000557507
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_375 2 2 0.000557543
Vanilla planifolia CM028150.1 2 CH_vpl_268 2 2 0.000221664
Vitis vinifera chr2 2 CH_vvi_413 2 3 0.000684523
Zea mays 2 2 CH_zma_57 3 3 0.0000000156868

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001