Functional clusters

Information

  • Type MapMan
  • Description Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NAD(P)H dehydrogenase (NDB)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 1 CH_acertr_106 3 3 0.00000002982
Actinidia chinensis Lachesis_group5 1 CH_ach_184 2 2 0.000325928
Aquilegia oxysepala CHR01 1 CH_aox_321 2 3 0.000721742
Amborella trichopoda AmTr_v1.0_scaffold00003 1 CH_atr_237 2 3 0.000238313
Brassica carinata ChrC06 1 CH_bca_853 2 2 0.000320646
Camellia sinensis var. sinensis Chr7 1 CH_camsi_821 2 2 0.000458547
Capsicum annuum PGAv.1.6.scaffold508 1 CH_can_398 2 2 0.000495663
Cicer arietinum L. Ca_LG5_v3 1 CH_car_266 2 2 0.000466981
Coffea canephora chr5 1 CH_ccan_301 2 12 0.000357741
Citrus clementina scaffold_2 1 CH_ccl_468 2 3 0.000738229
Carica papaya supercontig_34 1 CH_cpa_302 2 2 0.000285198
Davidia involucrata GWHABJS00000001 1 CH_din_496 2 2 0.000750188
Davidia involucrata GWHABJS00000013 1 CH_din_497 2 2 0.000750188
Erythranthe guttata scaffold_13 1 CH_egut_361 2 2 0.000218444
Glycine max Gm12 1 CH_gma_597 2 2 0.00079707
Helianthus annuus HanXRQChr17 1 CH_han_729 2 2 0.0008115
Lupinus albus Lalb_Chr03 1 CH_lal_352 2 2 0.000524824
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_451 2 2 0.000308404
Magnolia biondii Chr02 1 CH_mbi_76 4 6 0.0000000000257736
Manihot esculenta Chromosome13 1 CH_mes_354 2 2 0.000183189
Nelumbo nucifera chr1 1 CH_nnu_351 2 4 0.000261597
Petunia axillaris Peaxi162Scf00608 1 CH_pax_305 2 2 0.000422134
Petunia axillaris Peaxi162Scf00007 1 CH_pax_306 2 2 0.000422134
Punica granatum NC_045128.1 1 CH_pgr_280 2 2 0.000225107
Prunus persica Pp03 1 CH_ppe_405 2 2 0.000223789
Populus trichocarpa Chr13 1 CH_ptr_165 3 3 0.0000000501143
Phaseolus vulgaris Chr11 1 CH_pvu_405 2 2 0.000440836
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_583 2 2 0.000119596
Theobroma cacao Chromosome_2 1 CH_tca_416 2 3 0.000659107
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_321 2 2 0.000278772
Vigna mungo CM024076.1 1 CH_vmu_337 2 2 0.000387685
Vitis vinifera chr12 1 CH_vvi_380 2 2 0.000456378
Acer truncatum chr6 2 CH_acertr_106 3 3 0.00000002982
Actinidia chinensis Lachesis_group5 2 CH_ach_184 2 2 0.000325928
Aquilegia oxysepala CHR01 2 CH_aox_321 2 3 0.000721742
Amborella trichopoda AmTr_v1.0_scaffold00003 2 CH_atr_237 2 3 0.000238313
Brassica carinata ChrC06 2 CH_bca_853 2 2 0.000320646
Camellia sinensis var. sinensis Chr7 2 CH_camsi_821 2 2 0.000458547
Capsicum annuum PGAv.1.6.scaffold508 2 CH_can_398 2 2 0.000495663
Cicer arietinum L. Ca_LG5_v3 2 CH_car_266 2 2 0.000466981
Coffea canephora chr5 2 CH_ccan_301 2 12 0.000357741
Citrus clementina scaffold_2 2 CH_ccl_468 2 3 0.000738229
Carica papaya supercontig_34 2 CH_cpa_302 2 2 0.000285198
Davidia involucrata GWHABJS00000001 2 CH_din_496 2 2 0.000750188
Davidia involucrata GWHABJS00000013 2 CH_din_497 2 2 0.000750188
Eucalyptus grandis Chr11 2 CH_egr_437 3 4 0.0000000822093
Erythranthe guttata scaffold_13 2 CH_egut_361 2 2 0.000218444
Glycine max Gm12 2 CH_gma_597 2 2 0.00079707
Helianthus annuus HanXRQChr17 2 CH_han_729 2 2 0.0008115
Lupinus albus Lalb_Chr03 2 CH_lal_352 2 2 0.000524824
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_451 2 2 0.000308404
Magnolia biondii Chr02 2 CH_mbi_76 4 6 0.0000000000257736
Manihot esculenta Chromosome13 2 CH_mes_354 2 2 0.000183189
Nelumbo nucifera chr1 2 CH_nnu_351 2 4 0.000261597
Petunia axillaris Peaxi162Scf00608 2 CH_pax_305 2 2 0.000422134
Petunia axillaris Peaxi162Scf00007 2 CH_pax_306 2 2 0.000422134
Punica granatum NC_045128.1 2 CH_pgr_280 2 2 0.000225107
Prunus persica Pp03 2 CH_ppe_405 2 2 0.000223789
Populus trichocarpa Chr13 2 CH_ptr_165 3 3 0.0000000501143
Phaseolus vulgaris Chr11 2 CH_pvu_405 2 2 0.000440836
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_583 2 2 0.000119596
Theobroma cacao Chromosome_2 2 CH_tca_416 2 3 0.000659107
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_321 2 2 0.000278772
Vigna mungo CM024076.1 2 CH_vmu_337 2 2 0.000387685
Vitis vinifera chr12 2 CH_vvi_380 2 2 0.000456378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001