Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA 3'-end processing

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cicer arietinum L. Ca_LG8_v3 1 CH_car_281 5 57 0.000475025
Quercus lobata 4 1 CH_qlo_846 5 62 0.000246924
Cicer arietinum L. Ca_LG8_v3 2 CH_car_281 5 57 0.000475025
Quercus lobata 4 2 CH_qlo_846 5 62 0.000246924

Available child term results

Ontology identifier Description Number of clusters
16.3.1.1.1 RNA processing.RNA 3'-end processing.mRNA polyadenylation.poly(A) RNA polymerase activity.poly(A) RNA polymerase 28
16.3.1.1.2 RNA processing.RNA 3'-end processing.mRNA polyadenylation.poly(A) RNA polymerase activity.poly(A) RNA polymerase regulatory protein 12
16.3.1.2.1 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF160/Yhh1 10
16.3.1.2.10 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.phosphatase component Ssu72 8
16.3.1.2.2 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF100/Ydh1 16
16.3.1.2.3 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.nuclease component CPSF73-I 27
16.3.1.2.4 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.nuclease component CPSF73-II 2
16.3.1.2.5 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF30/Yth1 4
16.3.1.2.6 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component Fip1 6
16.3.1.2.7 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component Pfs2/FY 2
16.3.1.2.8 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.ubiquitin ligase component PQT3/MPE1 12
16.3.1.2.9 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component Symplekin/Pta1 45
16.3.1.3 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Stimulatory Factor (CstF) complex 2
16.3.1.3.1 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Stimulatory Factor (CstF) complex.component CstF77/Rna14 2
16.3.1.3.2 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Stimulatory Factor (CstF) complex.component CstF64/Rna15 6
16.3.1.3.3 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Stimulatory Factor (CstF) complex.component CstF50 8
16.3.1.3.4 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Stimulatory Factor (CstF) complex.component ESP1 7
16.3.1.4.1 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor I (CF-Im) complex.component CPFS5/CFIm25 14
16.3.1.4.2 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor I (CF-Im) complex.component CPFS6/CFIm68 36
16.3.1.5.1 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor II (CF-IIm) complex.component Clp1 10
16.3.1.5.2 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor II (CF-IIm) complex.component Pcf11 51
16.3.2.1.1 RNA processing.RNA 3'-end processing.snRNA maturation.DSP snRNA processing complex.component DSP1 12
16.3.2.1.2 RNA processing.RNA 3'-end processing.snRNA maturation.DSP snRNA processing complex.component DSP2 1
16.3.2.1.3 RNA processing.RNA 3'-end processing.snRNA maturation.DSP snRNA processing complex.component DSP3/SIEL 2
16.3.2.1.4 RNA processing.RNA 3'-end processing.snRNA maturation.DSP snRNA processing complex.component DSP4 5

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001