Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor II (CF-IIm) complex.component Pcf11

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr8 1 CH_acertr_412 2 2 0.000211491
Actinidia chinensis Lachesis_group0 1 CH_ach_181 2 2 0.000325928
Amaranthus hybridus AmaHy_arrow1_Scaffold_9 1 CH_amhyb_252 2 3 0.000757523
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_315 3 3 0.00000178815
Corylus avellana 10 1 CH_cav_414 2 2 0.000460017
Ceratophyllum demersum 9 1 CH_cde_35 4 16 0.000000187941
Davidia involucrata GWHABJS00000021 1 CH_din_462 2 2 0.000500125
Gossypium hirsutum A04 1 CH_ghi_304 3 4 0.000000705787
Gossypium hirsutum D04 1 CH_ghi_38 6 8 3.95059e-18
Glycine max Gm10 1 CH_gma_593 2 2 0.00079707
Glycine max Gm19 1 CH_gma_594 2 2 0.00079707
Gossypium raimondii Chr09 1 CH_gra_139 3 5 0.000000172435
Hydrangea macrophylla Hma1.2p1_0084F.1 1 CH_hma_189 2 2 0.000111086
Lupinus albus Lalb_Chr25 1 CH_lal_97 3 3 0.000000347064
Lonicera japonica GWHAAZE00000002 1 CH_lonja_532 2 2 0.000359324
Physcomitrium patens Chr16 1 CH_ppa_198 2 4 0.000367613
Phaseolus vulgaris Chr07 1 CH_pvu_399 2 2 0.000440836
Salix brachista GWHAAZH00000017 1 CH_sbr_23 7 22 0.00000000000000143928
Sequoiadendron giganteum chr10 1 CH_sgi_1085 2 2 0.000146145
Sapria himalayana scaffold3_21451142 1 CH_shi_33 3 3 0.0000000196182
Theobroma cacao Chromosome_5 1 CH_tca_390 2 2 0.000439432
Utricularia gibba unitig_0 1 CH_ugi_251 2 2 0.000440755
Utricularia gibba unitig_749 1 CH_ugi_252 2 2 0.000440755
Vigna mungo CM024071.1 1 CH_vmu_333 2 2 0.000387685
Vanilla planifolia CM028150.1 1 CH_vpl_165 2 2 0.000073888
Acer truncatum chr8 2 CH_acertr_412 2 2 0.000211491
Actinidia chinensis Lachesis_group0 2 CH_ach_181 2 2 0.000325928
Amaranthus hybridus AmaHy_arrow1_Scaffold_9 2 CH_amhyb_252 2 3 0.000757523
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_315 3 3 0.00000178815
Corylus avellana 10 2 CH_cav_414 2 2 0.000460017
Ceratophyllum demersum 9 2 CH_cde_35 4 16 0.000000187941
Davidia involucrata GWHABJS00000021 2 CH_din_462 2 2 0.000500125
Gossypium hirsutum A04 2 CH_ghi_304 3 4 0.000000705787
Gossypium hirsutum D04 2 CH_ghi_38 6 8 3.95059e-18
Glycine max Gm10 2 CH_gma_593 2 2 0.00079707
Glycine max Gm19 2 CH_gma_594 2 2 0.00079707
Gossypium raimondii Chr09 2 CH_gra_139 3 5 0.000000172435
Hydrangea macrophylla Hma1.2p1_0084F.1 2 CH_hma_189 2 2 0.000111086
Lupinus albus Lalb_Chr25 2 CH_lal_97 3 3 0.000000347064
Lotus japonicus chr1 2 CH_lja_365 2 2 0.000429046
Lonicera japonica GWHAAZE00000002 2 CH_lonja_532 2 2 0.000359324
Physcomitrium patens Chr16 2 CH_ppa_198 2 4 0.000367613
Phaseolus vulgaris Chr07 2 CH_pvu_399 2 2 0.000440836
Salix brachista GWHAAZH00000017 2 CH_sbr_23 7 22 0.00000000000000143928
Sequoiadendron giganteum chr10 2 CH_sgi_1085 2 2 0.000146145
Sapria himalayana scaffold3_21451142 2 CH_shi_33 3 3 0.0000000196182
Theobroma cacao Chromosome_5 2 CH_tca_390 2 2 0.000439432
Utricularia gibba unitig_0 2 CH_ugi_251 2 2 0.000440755
Utricularia gibba unitig_749 2 CH_ugi_252 2 2 0.000440755
Vigna mungo CM024071.1 2 CH_vmu_333 2 2 0.000387685
Vanilla planifolia CM028150.1 2 CH_vpl_165 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001