Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component Symplekin/Pta1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_362 1 CH_aag_151 2 4 0.000481502
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 1 CH_amhyb_196 2 2 0.000252525
Brassica napus C03 1 CH_bna_235 3 6 0.000000361329
Corylus avellana 7 1 CH_cav_445 2 3 0.000689981
Coffea canephora chr10 1 CH_ccan_318 2 15 0.000459951
Citrus clementina scaffold_5 1 CH_ccl_386 2 2 0.000246093
Ceratophyllum demersum 11 1 CH_cde_23 3 3 0.0000000374281
Carya illinoinensis Chr16 1 CH_cil_420 2 2 0.000185948
Carica papaya supercontig_11 1 CH_cpa_12 4 5 0.0000000000128887
Chenopodium quinoa C_Quinoa_Scaffold_2775 1 CH_cqu_415 2 2 0.000284293
Davidia involucrata GWHABJS00000015 1 CH_din_418 2 2 0.000300075
Hydrangea macrophylla Hma1.2p1_0362F.1 1 CH_hma_187 2 2 0.000111086
Malus domestica Chr04 1 CH_mdo_637 2 2 0.000379212
Nicotiana tabacum Nitab4.5_0000377 1 CH_nta_96 2 2 0.000109727
Olea europaea chr22 1 CH_oeu_227 2 2 0.000160137
Salvia bowleyana GWHASIU00000007 1 CH_sbo_332 2 2 0.000136494
Sequoiadendron giganteum chr2 1 CH_sgi_501 3 4 0.0000000569549
Sapria himalayana scaffold7_18583372 1 CH_shi_39 3 4 0.0000000784688
Solanum lycopersicum SL4.0ch09 1 CH_sly_464 2 2 0.000352164
Solanum lycopersicum SL4.0ch04 1 CH_sly_465 2 2 0.000352164
Vitis vinifera chr18 1 CH_vvi_330 2 2 0.000228189
Anthoceros agrestis Sc2ySwM_362 2 CH_aag_151 2 4 0.000481502
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 2 CH_amhyb_196 2 2 0.000252525
Corylus avellana 7 2 CH_cav_445 2 3 0.000689981
Coffea canephora chr10 2 CH_ccan_318 2 15 0.000459951
Citrus clementina scaffold_5 2 CH_ccl_386 2 2 0.000246093
Ceratophyllum demersum 11 2 CH_cde_23 3 3 0.0000000374281
Carya illinoinensis Chr16 2 CH_cil_420 2 2 0.000185948
Carica papaya supercontig_11 2 CH_cpa_12 4 5 0.0000000000128887
Chenopodium quinoa C_Quinoa_Scaffold_2775 2 CH_cqu_415 2 2 0.000284293
Davidia involucrata GWHABJS00000015 2 CH_din_418 2 2 0.000300075
Eucalyptus grandis Chr01 2 CH_egr_829 2 2 0.000351165
Eucalyptus grandis Chr06 2 CH_egr_830 2 2 0.000351165
Gossypium hirsutum A01 2 CH_ghi_815 2 2 0.000747644
Gossypium hirsutum D05 2 CH_ghi_816 2 2 0.000747644
Hydrangea macrophylla Hma1.2p1_0362F.1 2 CH_hma_187 2 2 0.000111086
Malus domestica Chr04 2 CH_mdo_637 2 2 0.000379212
Nicotiana tabacum Nitab4.5_0000377 2 CH_nta_96 2 2 0.000109727
Olea europaea chr22 2 CH_oeu_227 2 2 0.000160137
Salvia bowleyana GWHASIU00000007 2 CH_sbo_332 2 2 0.000136494
Sequoiadendron giganteum chr2 2 CH_sgi_501 3 4 0.0000000569549
Sapria himalayana scaffold7_18583372 2 CH_shi_39 3 4 0.0000000784688
Solanum lycopersicum SL4.0ch09 2 CH_sly_464 2 2 0.000352164
Solanum lycopersicum SL4.0ch04 2 CH_sly_465 2 2 0.000352164
Vitis vinifera chr18 2 CH_vvi_330 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001