Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p10810 Brassica napus
A04p21170 Brassica napus
A10p18270 Brassica napus
A10p32360 Brassica napus
Aa31LG1G12970 Aethionema arabicum
Aa31LG1G21510 Aethionema arabicum
Aa31LG4G14300 Aethionema arabicum
Aa31LG5G8180 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3222 Anthoceros agrestis
Actinidia03679 Actinidia chinensis
Actinidia07209 Actinidia chinensis
Actinidia24182 Actinidia chinensis
Ah.01g016800 Amaranthus hybridus
AL4G22390 Arabidopsis lyrata
AL5G10320 Arabidopsis lyrata
AL5G22980 Arabidopsis lyrata
AL6G13270 Arabidopsis lyrata
AL6G14790 Arabidopsis lyrata
AL6G33680 Arabidopsis lyrata
Aqoxy1G00951 Aquilegia oxysepala
Aqoxy2G01426 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5M8Q56 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.63G8L5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DY7VNH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FWC0NE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LFCJ36 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NDTT14 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TTDV1E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UEL5VR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VS5FH3 Arachis hypogaea
AT2G27840 Arabidopsis thaliana
AT3G44750 Arabidopsis thaliana
AT5G03740 Arabidopsis thaliana
AT5G22650 Arabidopsis thaliana
ATR0804G015 Amborella trichopoda
Atru.chr3.3388 Acer truncatum
Atru.chr8.1641 Acer truncatum
AUR62023943 Chenopodium quinoa
AUR62033584 Chenopodium quinoa
AUR62038296 Chenopodium quinoa
AUR62038297 Chenopodium quinoa
AUR62041415 Chenopodium quinoa
BcaB01g01141 Brassica carinata
BcaB01g04702 Brassica carinata
BcaB01g04703 Brassica carinata
BcaB01g04704 Brassica carinata
BcaB05g22708 Brassica carinata
BcaB05g22711 Brassica carinata
BcaB05g22713 Brassica carinata
BcaB05g22867 Brassica carinata
BcaB06g28173 Brassica carinata
BcaB08g36411 Brassica carinata
BcaC01g06576 Brassica carinata
BcaC02g08226 Brassica carinata
BcaC03g13902 Brassica carinata
BcaC03g13906 Brassica carinata
BcaC06g32081 Brassica carinata
BcaC09g49651 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p00470 Brassica napus
BNapus_Darmor_BZH_scaffold_38p00500 Brassica napus
BNapus_Darmor_BZH_scaffold_38p00520 Brassica napus
BolC2t07179H Brassica oleracea
BolC2t07186H Brassica oleracea
BolC3t13714H Brassica oleracea
BolC4t27235H Brassica oleracea
BolC9t58264H Brassica oleracea
BolC9t60053H Brassica oleracea
BraA02t05671Z Brassica rapa
BraA02t05679Z Brassica rapa
BraA03t10390Z Brassica rapa
BraA04t17686Z Brassica rapa
BraA10t43903Z Brassica rapa
BraA10t45276Z Brassica rapa
C01p13840 Brassica napus
C02p11070 Brassica napus
C02p11090 Brassica napus
C02p11140 Brassica napus
C03p12430 Brassica napus
C03p12440 Brassica napus
C04p57000 Brassica napus
C09p53920 Brassica napus
C09p73180 Brassica napus
CAN.G1099.3 Capsicum annuum
CAN.G644.35 Capsicum annuum
CAN.G824.24 Capsicum annuum
CAN.G98.7 Capsicum annuum
CANSAT54G1531 Cannabis sativa
CANSAT80G0408 Cannabis sativa
CARHR120540 Cardamine hirsuta
CARHR151390 Cardamine hirsuta
CARHR190930 Cardamine hirsuta
CARHR208840 Cardamine hirsuta
CARHR209560 Cardamine hirsuta
Carub.0004s0860 Capsella rubella
Carub.0005s1044 Capsella rubella
Carub.0006s0266 Capsella rubella
Carub.0006s2037 Capsella rubella
Carub.0015s0001 Capsella rubella
Ca_01682_v3 Cicer arietinum L.
Ca_08965_v3 Cicer arietinum L.
Ca_19368_v3 Cicer arietinum L.
CBR_g29834 Chara braunii
Cc01_g09850 Coffea canephora
Cc06_g05190 Coffea canephora
Cc06_g05200 Coffea canephora
CDE02G4550 Ceratophyllum demersum
CDE06G2425 Ceratophyllum demersum
CDE11G0679 Ceratophyllum demersum
Cfa016530 Carpinus fangiana
Ciclev10012182m.g Citrus clementina
Ciclev10028932m.g Citrus clementina
CiPaw.09G008200 Carya illinoinensis
CiPaw.13G141200 Carya illinoinensis
CiPaw.14G103900 Carya illinoinensis
ClCG02G021880 Citrullus lanatus
ClCG10G019420 Citrullus lanatus
COL.COLO4_19288 Corchorus olitorius
COL.COLO4_29822 Corchorus olitorius
Cpa.g.sc47.60 Carica papaya
Cpa.g.sc5.85 Carica papaya
Cpa.g.sc599.1 Carica papaya
CsaV3_3G036760 Cucumis sativus L.
CsaV3_6G014670 Cucumis sativus L.
CsaV3_6G014680 Cucumis sativus L.
CsaV3_6G014690 Cucumis sativus L.
CSS0011669 Camellia sinensis var. sinensis
CSS0026506 Camellia sinensis var. sinensis
CSS0033564 Camellia sinensis var. sinensis
CSS0048567 Camellia sinensis var. sinensis
CSS0049493 Camellia sinensis var. sinensis
CSS0050437 Camellia sinensis var. sinensis
DCAR_012775 Daucus carota
DCAR_015480 Daucus carota
DCAR_018742 Daucus carota
DCAR_020779 Daucus carota
Dinv19823 Davidia involucrata
Dinv21263 Davidia involucrata
Dinv29421 Davidia involucrata
Duzib093G2204 Durio zibethinus
Duzib150G0178 Durio zibethinus
Duzib168G1452 Durio zibethinus
Duzib170G0280 Durio zibethinus
ECA233G1515 Erigeron canadensis
ECA248G1510 Erigeron canadensis
EL10Ac7g16997 Beta vulgaris
EL10Ac9g21071 Beta vulgaris
EL10Ac9g21072 Beta vulgaris
Eucgr.J00421 Eucalyptus grandis
FAN02G0070 Fragaria x ananassa
FAN05G4964 Fragaria x ananassa
FAN05G5765 Fragaria x ananassa
FAN09G2940 Fragaria x ananassa
FAN11G2589 Fragaria x ananassa
FAN14G1368 Fragaria x ananassa
FAN16G0056 Fragaria x ananassa
FAN16G0851 Fragaria x ananassa
FAN21G2741 Fragaria x ananassa
FAN25G0254 Fragaria x ananassa
FvH4_3g29940 Fragaria vesca
FvH4_6g17790 Fragaria vesca
Glyma.03G190700 Glycine max
Glyma.11G189500 Glycine max
Glyma.12G084700 Glycine max
Glyma.12G181400 Glycine max
Glyma.13G319500 Glycine max
Glyma.19G191000 Glycine max
Gohir.A01G209500 Gossypium hirsutum
Gohir.A05G084101 Gossypium hirsutum
Gohir.A07G188301 Gossypium hirsutum
Gohir.A09G092600 Gossypium hirsutum
Gohir.A11G322200 Gossypium hirsutum
Gohir.D01G198600 Gossypium hirsutum
Gohir.D05G086900 Gossypium hirsutum
Gohir.D09G092700 Gossypium hirsutum
Gohir.D11G341300 Gossypium hirsutum
Gohir.D13G057400 Gossypium hirsutum
Gorai.002G242800 Gossypium raimondii
Gorai.002G243000 Gossypium raimondii
Gorai.006G109300 Gossypium raimondii
Gorai.007G371300 Gossypium raimondii
Gorai.009G088600 Gossypium raimondii
GSVIVG01000318001 Vitis vinifera
GSVIVG01031404001 Vitis vinifera
GSVIVG01033774001 Vitis vinifera
GSVIVG01033775001 Vitis vinifera
GSVIVG01037303001 Vitis vinifera
HanXRQChr01g0028841 Helianthus annuus
HanXRQChr02g0054801 Helianthus annuus
HanXRQChr02g0054811 Helianthus annuus
HanXRQChr02g0055001 Helianthus annuus
HanXRQChr02g0055011 Helianthus annuus
HanXRQChr11g0351121 Helianthus annuus
HanXRQChr11g0351131 Helianthus annuus
Haze_19531 Corylus avellana
Haze_23455 Corylus avellana
Hma1.2p1_0421F.1_g149850 Hydrangea macrophylla
HPP92_011561 Vanilla planifolia
HPP92_023108 Vanilla planifolia
Hund00791 Selenicereus undatus
Hund07702 Selenicereus undatus
Hund07707 Selenicereus undatus
Hund19274 Selenicereus undatus
Lalb_Chr03g0027901 Lupinus albus
Lalb_Chr14g0374221 Lupinus albus
Lalb_Chr14g0374231 Lupinus albus
Lalb_Chr20g0112191 Lupinus albus
Lalb_Chr20g0112201 Lupinus albus
Lalb_Chr22g0350611 Lupinus albus
Lalb_Chr22g0350621 Lupinus albus
Lalb_Chr24g0395111 Lupinus albus
Lj1g0014712 Lotus japonicus
Lj2A995T21 Lonicera japonica
Lj2C128T7 Lonicera japonica
Lj3g0001709 Lotus japonicus
Lj3g0016790 Lotus japonicus
Lj3g0018637 Lotus japonicus
Lsat_1_v5_gn_1_50361 Lactuca sativa
Lsat_1_v5_gn_6_42560 Lactuca sativa
Lsat_1_v5_gn_9_14921 Lactuca sativa
Manes.04G009200 Manihot esculenta
Manes.09G060536 Manihot esculenta
Manes.11G156700 Manihot esculenta
Mapoly0048s0048 Marchantia polymorpha
MBI01_g22509_MAGBIO Magnolia biondii
MBI05_g37577_MAGBIO Magnolia biondii
MBI07_g25281_MAGBIO Magnolia biondii
MBI15_g35009_MAGBIO Magnolia biondii
MBI16_g01007_MAGBIO Magnolia biondii
MBI16_g38690_MAGBIO Magnolia biondii
MBI17_g11106_MAGBIO Magnolia biondii
MBI18_g33390_MAGBIO Magnolia biondii
MD03G1134300 Malus domestica
MD03G1134400 Malus domestica
MD11G1156500 Malus domestica
MD11G1156600 Malus domestica
MD12G1016900 Malus domestica
MD12G1017000 Malus domestica
MD14G1014900 Malus domestica
Medtr2g084815 Medicago truncatula
Medtr4g055440 Medicago truncatula
Medtr4g055450 Medicago truncatula
Medtr4g074010 Medicago truncatula
MELO3C009430.2 Cucumis melo
MELO3C021456.2 Cucumis melo
MELO3C021457.2 Cucumis melo
Migut.D02332 Erythranthe guttata
Migut.J00993 Erythranthe guttata
Migut.L01752 Erythranthe guttata
MSTRG.10350 Avicennia marina
MSTRG.18730 Avicennia marina
MSTRG.19226 Avicennia marina
MSTRG.21067 Avicennia marina
MSTRG.26653 Avicennia marina
Nitab4.5_0000381g0300 Nicotiana tabacum
Nitab4.5_0001453g0070 Nicotiana tabacum
Nitab4.5_0001922g0030 Nicotiana tabacum
Nitab4.5_0005447g0010 Nicotiana tabacum
Nitab4.5_0007303g0060 Nicotiana tabacum
Nitab4.5_0010922g0040 Nicotiana tabacum
Nn2g13988 Nelumbo nucifera
Oeu008380.1 Olea europaea
Oeu062566.2 Olea europaea
Os01g0909100 Oryza sativa ssp. japonica
Os01g0909150 Oryza sativa ssp. japonica
Os01g0909500 Oryza sativa ssp. japonica
Os05g0597100 Oryza sativa ssp. japonica
Peaxi162Scf00146g00614 Petunia axillaris
Peaxi162Scf00433g00087 Petunia axillaris
Peaxi162Scf00789g00531 Petunia axillaris
PGR102G0030 Punica granatum
PGR119G1578 Punica granatum
PGSC0003DMG400002221 Solanum tuberosum
PGSC0003DMG400002684 Solanum tuberosum
PGSC0003DMG400008398 Solanum tuberosum
PGSC0003DMG400026532 Solanum tuberosum
Phvul.001G186300 Phaseolus vulgaris
Phvul.005G127600 Phaseolus vulgaris
Phvul.008G179800 Phaseolus vulgaris
Phvul.011G090000 Phaseolus vulgaris
Potri.004G188800 Populus trichocarpa
Potri.006G116500 Populus trichocarpa
Potri.009G149400 Populus trichocarpa
Pp3c1_23930 Physcomitrium patens
Pp3c2_11820 Physcomitrium patens
Pp3c2_6080 Physcomitrium patens
PRCOL_00006920 Prasinoderma coloniale
Prupe.1G446100 Prunus persica
Prupe.6G118700 Prunus persica
Prupe.7G118500 Prunus persica
Psat3g036720 Pisum sativum
Psat5g254240 Pisum sativum
Psat6g059360 Pisum sativum
Psat7g190640 Pisum sativum
PSO063G4060 Papaver somniferum
PSO063G7538 Papaver somniferum
PSO339G0838 Papaver somniferum
PSO339G5760 Papaver somniferum
PSO384G0165 Papaver somniferum
PSO384G0416 Papaver somniferum
PSO675G1306 Papaver somniferum
PSO832G2513 Papaver somniferum
QL07p040656 Quercus lobata
QL10p041431 Quercus lobata
QL10p041434 Quercus lobata
QL11p004832 Quercus lobata
RcHm_v2.0_Chr3g0472041 Rosa chinensis
RcHm_v2.0_Chr5g0055321 Rosa chinensis
RcHm_v2.0_Chr5g0055331 Rosa chinensis
Rhsim01G0208600 Rhododendron simsii
Rhsim03G0081700 Rhododendron simsii
Rhsim04G0136200 Rhododendron simsii
Rhsim13G0105400 Rhododendron simsii
Sabra04G0129300 Salix brachista
Sabra06G0090900 Salix brachista
Sabra09G0118000 Salix brachista
Sabra18G0094500 Salix brachista
SalBow3G0353 Salvia bowleyana
SalBow6G3636 Salvia bowleyana
Sc06g0008890 Simmondsia chinensis
Sc20g0006000 Simmondsia chinensis
Sc21g0004690 Simmondsia chinensis
Sed0003899 Sechium edule
Sed0011854 Sechium edule
Sed0023502 Sechium edule
Sed0027387 Sechium edule
SEGI_21426 Sequoiadendron giganteum
SGA_v2.0_scaffold184G39914 Striga asiatica
SGA_v2.0_scaffold276G46606 Striga asiatica
SGA_v2.0_scaffold27G11605 Striga asiatica
SGA_v2.0_scaffold40G15411 Striga asiatica
SGA_v2.0_scaffold53G19352 Striga asiatica
SGA_v2.0_scaffold75G24799 Striga asiatica
SGA_v2.0_scaffold89G27402 Striga asiatica
SMO348G0062 Selaginella moellendorffii
Solyc09g009030.4 Solanum lycopersicum
Solyc10g085560.3 Solanum lycopersicum
Solyc11g066840.3 Solanum lycopersicum
Sopen10g034970 Solanum pennellii
Sopen11g026550 Solanum pennellii
Sp4g10680 Schrenkiella parvula
Sp5g16430 Schrenkiella parvula
Sp6g22690 Schrenkiella parvula
Sp6g38980 Schrenkiella parvula
TAR369G0885 Trochodendron aralioides
TAR633G0649 Trochodendron aralioides
TAR636G1096 Trochodendron aralioides
TAR636G3115 Trochodendron aralioides
THA.LOC104799534 Tarenaya hassleriana
THA.LOC104800559 Tarenaya hassleriana
THA.LOC104810899 Tarenaya hassleriana
THA.LOC104814806 Tarenaya hassleriana
THA.LOC104816375 Tarenaya hassleriana
Thecc.01G304900 Theobroma cacao
Thecc.05G080400 Theobroma cacao
Thecc.09G292300 Theobroma cacao
Thhalv10002782m.g Eutrema salsugineum
Thhalv10014245m.g Eutrema salsugineum
Thhalv10014266m.g Eutrema salsugineum
Thhalv10017218m.g Eutrema salsugineum
TPR.G10243 Trifolium pratense
TPR.G2639 Trifolium pratense
TPR.G32379 Trifolium pratense
TWI31G0812 Tripterygium wilfordii
TWI74G1258 Tripterygium wilfordii
TWI75G0541 Tripterygium wilfordii
TWI79G0547 Tripterygium wilfordii
unitig_22.g5116 Utricularia gibba
unitig_578.g16376 Utricularia gibba
unitig_747.g21965 Utricularia gibba
unitig_8.g4722 Utricularia gibba
unitig_8.g4723 Utricularia gibba
vmacro03280 Vaccinium macrocarpon
vmacro07367 Vaccinium macrocarpon
vmacro14374 Vaccinium macrocarpon
VMungo1080G0825 Vigna mungo
VMungo1080G0957 Vigna mungo
VMungo1080G1713 Vigna mungo
VMungo1127G1742 Vigna mungo
VMungo1383G2827 Vigna mungo
Zm00001eb041580 Zea mays
Zm00001eb069250 Zea mays
Zm00001eb143960 Zea mays
Zm00001eb294030 Zea mays
Zm00001eb333840 Zea mays
Zm00001eb356490 Zea mays
Zm00001eb365080 Zea mays
Zm00001eb365100 Zea mays

User provided reference genes

Program Settings