Gene: Os01g0909500
General Information
Structural Information
- Species Oryza sativa ssp. japonica
- Gene Identifier Os01g0909500
- Transcript Identifier Os01t0909500-02
- Gene Type Coding gene
- Location chr01 : 39620582-39623274 : negative
Gene Family Information
- ID HOM05D001688
- #Genes/#Species 383/97
- Phylogenetic origin
- ID ORTHO05D001571
- #Genes/#Species 387/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Os01t0909500-02
- MSU-ID LOC_Os01g68160.1
- MSU-ID LOC_Os01g68160.2
- MSU-ID LOC_Os01g68160.3
- MSU-ID LOC_Os01g68160.4
- MSU-ID LOC_Os01g68160.5
- uniprot Q0JGR3
Descriptions
- Description Similar to cDNA clone:J013116D08, full insert sequence.
- Description Hypothetical conserved gene.
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009294 | ISO | PLAZA Integrative Orthology | DNA mediated transformation | AT5G22650 |
| GO:0010162 | ISO | PLAZA Integrative Orthology | seed dormancy process | AT5G22650 |
| GO:0009944 | ISO | PLAZA Integrative Orthology | polarity specification of adaxial/abaxial axis | AT5G22650 |
| GO:0048364 | ISO | PLAZA Integrative Orthology | root development | AT5G22650 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT5G22650 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT2G27840 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G22650 |
| GO:0004407 | ISO | PLAZA Integrative Orthology | histone deacetylase activity | AT5G22650 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT5G22650 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT5G22650 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G22650 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT5G22650 |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT5G22650 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G22650 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR041232 | Nucleoplasmin-like domain |
| Mapman id | Description |
|---|---|
| 12.3.2.2 | Chromatin organisation.post-translational histone modification.histone deacetylation.HD2 histone deacetylase |