Gene: AT5G03740

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G03740
  • Transcript Identifier AT5G03740.1
  • Gene Type Coding gene
  • Location Chr5 : 981994-983961 : positive

Gene Family Information

  • ID HOM05D001688
  • #Genes/#Species 383/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G03740.1
  • symbol HD2C
  • Alias HDT3,HISTONE DEACETYLASE 3
  • uniprot Q9LZR5

Descriptions

  • Description histone deacetylase 2C
  • Computational description histone deacetylase 2C (HD2C); FUNCTIONS IN: histone deacetylase activity, transcription repressor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to water deprivation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: nucleolus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.2); Has 47549 Blast hits to 20091 proteins in 1212 species: Archae - 111; Bacteria - 17827; Metazoa - 12467; Fungi - 4889; Plants - 1882; Viruses - 518; Other Eukaryotes - 9855 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006325
IEA
GOA Databasechromatin organization
GO:0045892
IDA
IBA
Gene Ontologynegative regulation of transcription, DNA-templated1 2
GO:0010162
IBA
Gene Ontologyseed dormancy process2
GO:0009409
IEP
Gene Ontologyresponse to cold3
GO:0009737
IEP
Gene Ontologyresponse to abscisic acid4
GO:0009651
IMP
Gene Ontologyresponse to salt stress4
GO:0009414
IMP
Gene Ontologyresponse to water deprivation4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding5
GO:0005515
IPI
Gene Ontologyprotein binding6
GO:0004407
ISS
Gene Ontologyhistone deacetylase activity7

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
HDA
Gene Ontologyplasma membrane8
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA, HDA
IBA
Gene Ontologynucleolus2 4 9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR041232 Nucleoplasmin-like domain
Mapman id Description
12.3.2.2 Chromatin organisation.post-translational histone modification.histone deacetylation.HD2 histone deacetylase