Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p18220 Brassica napus
A03p57040 Brassica napus
A03p57060 Brassica napus
A08p33380 Brassica napus
A08p33400 Brassica napus
A09p11760 Brassica napus
A10p12100 Brassica napus
Aa31LG1G3160 Aethionema arabicum
Aa31LG5G10330 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1759 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1005 Anthoceros agrestis
Actinidia05112 Actinidia chinensis
Actinidia05529 Actinidia chinensis
Actinidia09917 Actinidia chinensis
Actinidia26941 Actinidia chinensis
Actinidia35327 Actinidia chinensis
Ah.04g165650 Amaranthus hybridus
Ah.09g235200 Amaranthus hybridus
AL1G22710 Arabidopsis lyrata
AL2G21980 Arabidopsis lyrata
AL7G25730 Arabidopsis lyrata
AL8G30240 Arabidopsis lyrata
Aqoxy144s009 Aquilegia oxysepala
Aqoxy1G03310 Aquilegia oxysepala
Aqoxy444s001 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.04U8N5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.0H79QG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.71PTP8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A8YTMR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EE2GV2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P54N2F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PA1DXY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T78YQH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TYGW7M Arachis hypogaea
AT4G27070 Arabidopsis thaliana
AT5G28237 Arabidopsis thaliana
AT5G54810 Arabidopsis thaliana
ATR0752G016 Amborella trichopoda
Atru.chr10.2160 Acer truncatum
Atru.chr10.2162 Acer truncatum
Atru.chr2.3258 Acer truncatum
Atru.chr2.3262 Acer truncatum
Atru.chr2.3267 Acer truncatum
AUR62012662 Chenopodium quinoa
AUR62015700 Chenopodium quinoa
AUR62020505 Chenopodium quinoa
AUR62021992 Chenopodium quinoa
BcaB03g13248 Brassica carinata
BcaB03g13250 Brassica carinata
BcaB05g22161 Brassica carinata
BcaB05g24053 Brassica carinata
BcaB08g35847 Brassica carinata
BcaC04g20299 Brassica carinata
BcaC04g22922 Brassica carinata
BcaC05g25029 Brassica carinata
BcaC06g32713 Brassica carinata
BcaC06g36512 Brassica carinata
BcaC07g38671 Brassica carinata
BcaC07g38673 Brassica carinata
BcaNung00352 Brassica carinata
BcaNung04802 Brassica carinata
BolC2t07769H Brassica oleracea
BolC4t21878H Brassica oleracea
BolC5t29715H Brassica oleracea
BolC7t40746H Brassica oleracea
BolC7t44815H Brassica oleracea
BolC7t44816H Brassica oleracea
BolC7t46009H Brassica oleracea
BolC7t46011H Brassica oleracea
BolC8t49104H Brassica oleracea
BolC8t49108H Brassica oleracea
BolC9t54277H Brassica oleracea
BolC9t57401H Brassica oleracea
BraA01t01777Z Brassica rapa
BraA03t14773Z Brassica rapa
BraA03t14776Z Brassica rapa
BraA08t35256Z Brassica rapa
BraA08t35257Z Brassica rapa
BraA09t36824Z Brassica rapa
BraA10t43309Z Brassica rapa
C02p16630 Brassica napus
C03p30050 Brassica napus
C04p02320 Brassica napus
C05p09740 Brassica napus
C05p26920 Brassica napus
C07p03510 Brassica napus
C07p42880 Brassica napus
C07p55010 Brassica napus
C07p55030 Brassica napus
C08p14560 Brassica napus
C08p14590 Brassica napus
C08p14640 Brassica napus
C08p14710 Brassica napus
C09p13860 Brassica napus
C09p45310 Brassica napus
CAN.G105.10 Capsicum annuum
CAN.G1781.11 Capsicum annuum
CAN.G337.102 Capsicum annuum
CANSAT56G1152 Cannabis sativa
CANSAT56G3201 Cannabis sativa
CARHR011890 Cardamine hirsuta
CARHR234720 Cardamine hirsuta
CARHR268150 Cardamine hirsuta
Carub.0001s1122 Capsella rubella
Carub.0007s1378 Capsella rubella
Carub.0008s1508 Capsella rubella
Ca_14708_v3 Cicer arietinum L.
Ca_14718_v3 Cicer arietinum L.
Ca_24373_v3 Cicer arietinum L.
Ca_24379_v3 Cicer arietinum L.
CBR_g4375 Chara braunii
Cc02_g11550 Coffea canephora
Cc05_g13460 Coffea canephora
CDE05G0666 Ceratophyllum demersum
CDE05G1999 Ceratophyllum demersum
CDE05G2307 Ceratophyllum demersum
Cfa014418 Carpinus fangiana
Cfa020393 Carpinus fangiana
Cfa025405 Carpinus fangiana
Ciclev10008204m.g Citrus clementina
Ciclev10015207m.g Citrus clementina
CiPaw.09G088500 Carya illinoinensis
CiPaw.10G068900 Carya illinoinensis
CiPaw.11G186400 Carya illinoinensis
CiPaw.12G127800 Carya illinoinensis
ClCG03G004920 Citrullus lanatus
ClCG05G014530 Citrullus lanatus
Cpa.g.sc198.18 Carica papaya
Cpa.g.sc97.46 Carica papaya
Cre03.g161400 Chlamydomonas reinhardtii
CsaV3_1G010970 Cucumis sativus L.
CsaV3_1G010980 Cucumis sativus L.
CsaV3_1G044710 Cucumis sativus L.
CSS0016157 Camellia sinensis var. sinensis
CSS0017492 Camellia sinensis var. sinensis
CSS0018757 Camellia sinensis var. sinensis
CSS0034182 Camellia sinensis var. sinensis
CSS0034968 Camellia sinensis var. sinensis
CSS0040224 Camellia sinensis var. sinensis
CSS0040891 Camellia sinensis var. sinensis
CSS0043039 Camellia sinensis var. sinensis
DCAR_010034 Daucus carota
Dinv20027 Davidia involucrata
Dinv20028 Davidia involucrata
Dinv22288 Davidia involucrata
Duzib170G0422 Durio zibethinus
Duzib192G0600 Durio zibethinus
Duzib213G0207 Durio zibethinus
Duzib268G0665 Durio zibethinus
ECA236G1111 Erigeron canadensis
ECA236G3222 Erigeron canadensis
ECA238G1306 Erigeron canadensis
ECA240G2334 Erigeron canadensis
EL10Ac4g07905 Beta vulgaris
EL10Ac8g20005 Beta vulgaris
Eucgr.D01297 Eucalyptus grandis
Eucgr.D01298 Eucalyptus grandis
Eucgr.D01299 Eucalyptus grandis
Eucgr.D01300 Eucalyptus grandis
Eucgr.F03443 Eucalyptus grandis
FAN11G2880 Fragaria x ananassa
FAN15G2214 Fragaria x ananassa
FAN16G3085 Fragaria x ananassa
FAN20G1376 Fragaria x ananassa
FAN20G1464 Fragaria x ananassa
FAN21G2723 Fragaria x ananassa
FAN24G0148 Fragaria x ananassa
FAN24G2675 Fragaria x ananassa
FAN25G3785 Fragaria x ananassa
FvH4_2g15220 Fragaria vesca
FvH4_2g15230 Fragaria vesca
FvH4_3g22100 Fragaria vesca
Glyma.08G312300 Glycine max
Glyma.09G101000 Glycine max
Glyma.11G003500 Glycine max
Glyma.18G102800 Glycine max
Gohir.A04G020100 Gossypium hirsutum
Gohir.A06G146500 Gossypium hirsutum
Gohir.A13G139400 Gossypium hirsutum
Gohir.D05G366350 Gossypium hirsutum
Gohir.D06G152450 Gossypium hirsutum
Gohir.D13G144200 Gossypium hirsutum
Gohir.D13G144300 Gossypium hirsutum
Gorai.009G425500 Gossypium raimondii
Gorai.010G178000 Gossypium raimondii
Gorai.010G178100 Gossypium raimondii
Gorai.013G161300 Gossypium raimondii
Gorai.013G161400 Gossypium raimondii
GSVIVG01001997001 Vitis vinifera
GSVIVG01012644001 Vitis vinifera
HanXRQChr03g0077501 Helianthus annuus
HanXRQChr05g0129891 Helianthus annuus
Haze_06035 Corylus avellana
Haze_06756 Corylus avellana
Haze_06764 Corylus avellana
Haze_09641 Corylus avellana
Haze_12878 Corylus avellana
Haze_27507 Corylus avellana
Hma1.2p1_0034F.1_g021270 Hydrangea macrophylla
Hma1.2p1_0938F.1_g239170 Hydrangea macrophylla
HPP92_016538 Vanilla planifolia
Hund02105 Selenicereus undatus
Hund23282 Selenicereus undatus
Hund23496 Selenicereus undatus
Hund23497 Selenicereus undatus
Lalb_Chr05g0210881 Lupinus albus
Lalb_Chr12g0208791 Lupinus albus
Lalb_Chr20g0114181 Lupinus albus
Lj1C1227T3 Lonicera japonica
Lj1g0020790 Lotus japonicus
Lj6g0005690 Lotus japonicus
Lj6g0013122 Lotus japonicus
Lj6P182T4 Lonicera japonica
Lj8C167T13 Lonicera japonica
Lsat_1_v5_gn_7_109200 Lactuca sativa
Lsat_1_v5_gn_7_109300 Lactuca sativa
Lsat_1_v5_gn_7_109340 Lactuca sativa
Lsat_1_v5_gn_7_17281 Lactuca sativa
Manes.03G127600 Manihot esculenta
Manes.15G074600 Manihot esculenta
Manes.16G010900 Manihot esculenta
Manes.16G011000 Manihot esculenta
Manes.17G036500 Manihot esculenta
Mapoly0002s0153 Marchantia polymorpha
Mapoly0011s0212 Marchantia polymorpha
MBI02_g15266_MAGBIO Magnolia biondii
MBI02_g15274_MAGBIO Magnolia biondii
MBI02_g15275_MAGBIO Magnolia biondii
MBI02_g42755_MAGBIO Magnolia biondii
MBI02_g42756_MAGBIO Magnolia biondii
MCO11G189 Micromonas commoda
MCO14G394 Micromonas commoda
MD03G1208800 Malus domestica
MD11G1223500 Malus domestica
Medtr3g049410 Medicago truncatula
Medtr3g051120 Medicago truncatula
Medtr5g005670 Medicago truncatula
MELO3C002475.2 Cucumis melo
MELO3C002476.2 Cucumis melo
MELO3C018082.2 Cucumis melo
Migut.H01846 Erythranthe guttata
Migut.M01294 Erythranthe guttata
Migut.M01790 Erythranthe guttata
MSTRG.14427 Avicennia marina
MSTRG.15972 Avicennia marina
MSTRG.6904 Avicennia marina
Nitab4.5_0000397g0290 Nicotiana tabacum
Nitab4.5_0000397g0300 Nicotiana tabacum
Nitab4.5_0002155g0050 Nicotiana tabacum
Nitab4.5_0002229g0210 Nicotiana tabacum
Nitab4.5_0002342g0010 Nicotiana tabacum
Nitab4.5_0009124g0010 Nicotiana tabacum
Nitab4.5_0009124g0020 Nicotiana tabacum
Nitab4.5_0011608g0010 Nicotiana tabacum
Nn1g03597 Nelumbo nucifera
Nn1g03600 Nelumbo nucifera
Nn3g19768 Nelumbo nucifera
Oeu005456.1 Olea europaea
Oeu021400.1 Olea europaea
Oeu021401.1 Olea europaea
Oeu021403.1 Olea europaea
Oeu021404.1 Olea europaea
Os08g0135900 Oryza sativa ssp. japonica
Peaxi162Scf00387g00068 Petunia axillaris
Peaxi162Scf00450g00863 Petunia axillaris
Peaxi162Scf00950g00077 Petunia axillaris
Peaxi162Scf00950g00611 Petunia axillaris
PGR004G1102 Punica granatum
PGR031G0667 Punica granatum
PGR083G0335 Punica granatum
PGSC0003DMG400001048 Solanum tuberosum
PGSC0003DMG400011282 Solanum tuberosum
PGSC0003DMG400029136 Solanum tuberosum
PGSC0003DMG401014396 Solanum tuberosum
Phvul.002G048100 Phaseolus vulgaris
Phvul.006G037600 Phaseolus vulgaris
Phvul.006G040500 Phaseolus vulgaris
Potri.001G420300 Populus trichocarpa
Potri.011G024900 Populus trichocarpa
Potri.011G136000 Populus trichocarpa
Pp3c18_13130 Physcomitrium patens
Pp3c21_5470 Physcomitrium patens
Pp3c21_5560 Physcomitrium patens
Pp3c22_8510 Physcomitrium patens
PRCOL_00004763 Prasinoderma coloniale
Prupe.4G207900 Prunus persica
Psat4g210960 Pisum sativum
Psat5g192440 Pisum sativum
Psat5g194440 Pisum sativum
PSO210G3162 Papaver somniferum
PSO832G0857 Papaver somniferum
QL05p074622 Quercus lobata
QL06p002280 Quercus lobata
QL08p012211 Quercus lobata
QL08p033332 Quercus lobata
QL93p0196_0012 Quercus lobata
RcHm_v2.0_Chr5g0037911 Rosa chinensis
RcHm_v2.0_Chr6g0277971 Rosa chinensis
Rhsim04G0000400 Rhododendron simsii
Rhsim04G0001400 Rhododendron simsii
Rhsim04G0001500 Rhododendron simsii
Rhsim06G0214300 Rhododendron simsii
Sabra11G0015600 Salix brachista
Sabra11G0122200 Salix brachista
Sabra16G0285300 Salix brachista
SalBow7G0214 Salvia bowleyana
SalBow8G3259 Salvia bowleyana
Sc05g0008940 Simmondsia chinensis
Sc16g0006180 Simmondsia chinensis
Sed0004646 Sechium edule
Sed0016464 Sechium edule
Sed0019473 Sechium edule
Sed0022292 Sechium edule
SEGI_03100 Sequoiadendron giganteum
SEGI_37132 Sequoiadendron giganteum
SGA_v2.0_scaffold7G03873 Striga asiatica
SGA_v2.0_scaffold9G05053 Striga asiatica
SHI21915 Sapria himalayana
SHI31838 Sapria himalayana
SMO347G0026 Selaginella moellendorffii
Solyc05g046350.1 Solanum lycopersicum
Solyc07g064280.3 Solanum lycopersicum
Solyc10g005320.3 Solanum lycopersicum
Solyc10g006400.3 Solanum lycopersicum
Solyc10g018380.3 Solanum lycopersicum
Solyc10g018390.3 Solanum lycopersicum
Sopen07g032430 Solanum pennellii
Sopen10g001310 Solanum pennellii
Sopen10g002350 Solanum pennellii
Sopen10g007820 Solanum pennellii
Sopen10g007890 Solanum pennellii
Sp1g10210 Schrenkiella parvula
Sp6g16750 Schrenkiella parvula
Sp7g25040 Schrenkiella parvula
TAR624G0042 Trochodendron aralioides
TAR627G1020 Trochodendron aralioides
TAR627G1198 Trochodendron aralioides
TAR629G3294 Trochodendron aralioides
TAR683G0001 Trochodendron aralioides
TAR683G0002 Trochodendron aralioides
TAR683G0003 Trochodendron aralioides
THA.LOC104813419 Tarenaya hassleriana
THA.LOC104817648 Tarenaya hassleriana
THA.LOC104818871 Tarenaya hassleriana
Thecc.06G216000 Theobroma cacao
Thecc.07G044700 Theobroma cacao
Thhalv10009923m.g Eutrema salsugineum
Thhalv10013439m.g Eutrema salsugineum
Thhalv10014630m.g Eutrema salsugineum
Thhalv10025097m.g Eutrema salsugineum
TPR.G13557 Trifolium pratense
TPR.G13563 Trifolium pratense
TPR.G16568 Trifolium pratense
TPR.G20859 Trifolium pratense
TPR.G267 Trifolium pratense
TPR.G35141 Trifolium pratense
TPR.G37989 Trifolium pratense
TPR.G861 Trifolium pratense
TWI38G0248 Tripterygium wilfordii
TWI38G0455 Tripterygium wilfordii
unitig_0.g752 Utricularia gibba
vmacro03699 Vaccinium macrocarpon
vmacro09738 Vaccinium macrocarpon
vmacro11744 Vaccinium macrocarpon
VMungo0540G2055 Vigna mungo
VMungo0540G2114 Vigna mungo
VMungo1215G0075 Vigna mungo
VMungo1309G3136 Vigna mungo
Zm00001eb173100 Zea mays
Zm00001eb416990 Zea mays

User provided reference genes

Program Settings