Gene: AT5G28237

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G28237
  • Transcript Identifier AT5G28237.1
  • Gene Type Coding gene
  • Location Chr5 : 10207477-10213542 : negative

Gene Family Information

  • ID HOM05D001748
  • #Genes/#Species 370/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G28237.1
  • uniprot F4K727

Descriptions

  • Description Pyridoxal-5'-phosphate-dependent enzyme family protein
  • Computational description Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity; INVOLVED IN: tryptophan biosynthetic process, metabolic process, tryptophan metabolic process; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, beta chain (InterPro:IPR006654), Tryptophan synthase, beta chain, conserved site (InterPro:IPR006653), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: tryptophan synthase beta-subunit 2 (TAIR:AT4G27070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000162
IBA
IEA
Gene Ontologytryptophan biosynthetic process1
GO:0000162
IEA
InterProtryptophan biosynthetic process
GO:0008652
IEA
GOA Databasecellular amino acid biosynthetic process
GO:0009073
IEA
GOA Databasearomatic amino acid family biosynthetic process
GO:0006568
IEA
GOA Databasetryptophan metabolic process
GO:0006568
IEA
InterProtryptophan metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004834
IEA
Gene Ontologytryptophan synthase activity
GO:0004834
IEA
InterProtryptophan synthase activity
GO:0016829
IEA
GOA Databaselyase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005737
IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023026 Tryptophan synthase beta chain/beta chain-like
IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme
IPR006654 Tryptophan synthase, beta chain
IPR001926 Pyridoxal-phosphate dependent enzyme
Mapman id Description
50.4.2 Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen lyase