Gene: PGSC0003DMG400011282

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400011282
  • Transcript Identifier PGSC0003DMT400029363
  • Gene Type Coding gene
  • Location ST4.03ch10 : 370044-372413 : positive

Gene Family Information

  • ID HOM05D001748
  • #Genes/#Species 370/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37476531
  • id PGSC0003DMG400011282.v4.03
  • uniprot M1ASN8

Descriptions

  • Description Tryptophan synthase beta chain
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009684
ISO
PLAZA Integrative Orthologyindoleacetic acid biosynthetic process AT5G54810
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT5G54810
GO:0000162
IBA
IEA
GOA Databasetryptophan biosynthetic process
GO:0000162
IEA
InterProtryptophan biosynthetic process
GO:0006568
IEA
GOA Databasetryptophan metabolic process
GO:0006568
IEA
InterProtryptophan metabolic process
GO:0009073
IEA
GOA Databasearomatic amino acid family biosynthetic process
GO:0008652
IEA
GOA Databasecellular amino acid biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G27070
GO:0019904
ISO
PLAZA Integrative Orthologyprotein domain specific binding AT5G54810
GO:0004834
IEA
GOA Databasetryptophan synthase activity
GO:0004834
IEA
InterProtryptophan synthase activity
GO:0016829
IEA
GOA Databaselyase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G54810
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT4G27070
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT4G27070
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT4G27070

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006654 Tryptophan synthase, beta chain
IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme
IPR001926 Pyridoxal-phosphate dependent enzyme
IPR023026 Tryptophan synthase beta chain/beta chain-like
Mapman id Description
50.4.2 Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen lyase