Gene: AT5G54810

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G54810
  • Transcript Identifier AT5G54810.1
  • Gene Type Coding gene
  • Location Chr5 : 22264805-22266738 : negative

Gene Family Information

  • ID HOM05D001748
  • #Genes/#Species 370/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G54810.1
  • symbol TSB1
  • Alias ATTSB1,TRP2,TRYPTOPHAN BIOSYNTHESIS 2,TRPB,TRYPTOPHAN BIOSYNTHESIS B
  • uniprot P14671

Descriptions

  • Description tryptophan synthase beta-subunit 1
  • Computational description tryptophan synthase beta-subunit 1 (TSB1); FUNCTIONS IN: tryptophan synthase activity; INVOLVED IN: response to oxidative stress, tryptophan biosynthetic process, response to salt stress, indoleacetic acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: guard cell, root; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, beta chain (InterPro:IPR006654), Tryptophan synthase, beta chain, conserved site (InterPro:IPR006653), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: tryptophan synthase beta-subunit 2 (TAIR:AT4G27070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000162
IBA
TAS, IEA
Gene Ontologytryptophan biosynthetic process1 2
GO:0000162
IEA
InterProtryptophan biosynthetic process
GO:0006568
IEA
GOA Databasetryptophan metabolic process
GO:0006568
IEA
InterProtryptophan metabolic process
GO:0009073
IEA
GOA Databasearomatic amino acid family biosynthetic process
GO:0008652
IEA
GOA Databasecellular amino acid biosynthetic process
GO:0006979
IEP
Gene Ontologyresponse to oxidative stress3
GO:0009684
TAS
Gene Ontologyindoleacetic acid biosynthetic process4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019904
IPI
GOA Databaseprotein domain specific binding
GO:0004834
IEA
GOA Databasetryptophan synthase activity
GO:0004834
IDA, IMP
Gene Ontologytryptophan synthase activity5
GO:0004834
IEA
InterProtryptophan synthase activity
GO:0016829
IEA
GOA Databaselyase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISS, ISM
Gene Ontologychloroplast5 6
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane7
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
IBA
Gene Ontologychloroplast stroma2 8
GO:0005737
IBA
Gene Ontologycytoplasm2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006654 Tryptophan synthase, beta chain
IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme
IPR023026 Tryptophan synthase beta chain/beta chain-like
IPR001926 Pyridoxal-phosphate dependent enzyme
Mapman id Description
4.1.5.3.5.2 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.tryptophan synthase heterodimer.subunit beta