Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p15830 Brassica napus
A06p27460 Brassica napus
Aa31LG4G16790 Aethionema arabicum
Aa31LG7G14750 Aethionema arabicum
Aa31LG7G15750 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_340.33 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_340.34 Anthoceros agrestis
Actinidia18030 Actinidia chinensis
Actinidia19322 Actinidia chinensis
Ah.01g023340 Amaranthus hybridus
Ah.11g051590 Amaranthus hybridus
AL2G10240 Arabidopsis lyrata
AL5G27530 Arabidopsis lyrata
AL7G48900 Arabidopsis lyrata
Aqoxy3G02937 Aquilegia oxysepala
Aqoxy5G01087 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0L1HI6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1I6Y5K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BK2P93 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EMU6Q2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M4HWYD Arachis hypogaea
AT3G48190 Arabidopsis thaliana
AT5G40820 Arabidopsis thaliana
ATR0661G239 Amborella trichopoda
ATR0661G423 Amborella trichopoda
ATR0730G017 Amborella trichopoda
ATR0730G152 Amborella trichopoda
ATR0730G231 Amborella trichopoda
Atru.chr1.2616 Acer truncatum
Atru.chr2.2183 Acer truncatum
Atru.chr5.3458 Acer truncatum
Atru.chr9.2479 Acer truncatum
AUR62008208 Chenopodium quinoa
AUR62010002 Chenopodium quinoa
AUR62012990 Chenopodium quinoa
AUR62030960 Chenopodium quinoa
BcaB06g27763 Brassica carinata
BcaC01g02315 Brassica carinata
BcaNung06699 Brassica carinata
BcaNung07276 Brassica carinata
BolC3t18937H Brassica oleracea
BolC3t18938H Brassica oleracea
BolC4t26623H Brassica oleracea
BraA06t25686Z Brassica rapa
BraA06t25687Z Brassica rapa
BraA06t25688Z Brassica rapa
C03p66690 Brassica napus
C03p66700 Brassica napus
C04p50230 Brassica napus
CAN.G1305.19 Capsicum annuum
CAN.G1305.20 Capsicum annuum
CAN.G588.109 Capsicum annuum
CAN.G853.42 Capsicum annuum
CANSAT25G2086 Cannabis sativa
CANSAT80G1574 Cannabis sativa
CARHR115960 Cardamine hirsuta
CARHR156920 Cardamine hirsuta
CARHR156930 Cardamine hirsuta
CARHR162380 Cardamine hirsuta
Carub.0005s1431 Capsella rubella
Carub.0008s0072 Capsella rubella
Ca_03288_v3 Cicer arietinum L.
Ca_05696_v3 Cicer arietinum L.
Ca_16175_v3 Cicer arietinum L.
Ca_16176_v3 Cicer arietinum L.
CBR_g290 Chara braunii
CBR_g292 Chara braunii
CBR_g297 Chara braunii
CBR_g6357 Chara braunii
Cc04_g14130 Coffea canephora
Cc04_g14140 Coffea canephora
Cc09_g10400 Coffea canephora
CDE07G0247 Ceratophyllum demersum
CDE07G1059 Ceratophyllum demersum
CDE09G0008 Ceratophyllum demersum
Cfa005298 Carpinus fangiana
Cfa005306 Carpinus fangiana
Cfa019134 Carpinus fangiana
Ciclev10018427m.g Citrus clementina
Ciclev10027660m.g Citrus clementina
CiPaw.06G119600 Carya illinoinensis
CiPaw.11G026100 Carya illinoinensis
ClCG02G003850 Citrullus lanatus
ClCG06G017040 Citrullus lanatus
COL.COLO4_18014 Corchorus olitorius
COL.COLO4_30039 Corchorus olitorius
COL.COLO4_30228 Corchorus olitorius
COL.COLO4_30229 Corchorus olitorius
COL.COLO4_36420 Corchorus olitorius
Cpa.g.sc1166.1 Carica papaya
Cpa.g.sc20.125 Carica papaya
Cpa.g.sc76.48 Carica papaya
Cpa.g.sc76.49 Carica papaya
Cpa.g.sc76.53 Carica papaya
Cpa.g.sc76.54 Carica papaya
Cre10.g467200 Chlamydomonas reinhardtii
Cre13.g564350 Chlamydomonas reinhardtii
CsaV3_1G001470 Cucumis sativus L.
CsaV3_7G001280 Cucumis sativus L.
CSS0000775 Camellia sinensis var. sinensis
CSS0001027 Camellia sinensis var. sinensis
CSS0005128 Camellia sinensis var. sinensis
CSS0012833 Camellia sinensis var. sinensis
CSS0020547 Camellia sinensis var. sinensis
CSS0037969 Camellia sinensis var. sinensis
CSS0038273 Camellia sinensis var. sinensis
CSS0041674 Camellia sinensis var. sinensis
CSS0043056 Camellia sinensis var. sinensis
DCAR_022420 Daucus carota
DCAR_022421 Daucus carota
DCAR_026136 Daucus carota
Dinv14134 Davidia involucrata
Dinv20652 Davidia involucrata
Duzib052G0295 Durio zibethinus
Duzib084G0583 Durio zibethinus
ECA234G4688 Erigeron canadensis
ECA247G1446 Erigeron canadensis
EL10Ac5g10743 Beta vulgaris
EL10Ac9g21328 Beta vulgaris
Eucgr.I01462 Eucalyptus grandis
Eucgr.K02842 Eucalyptus grandis
FAN05G0227 Fragaria x ananassa
FAN05G4580 Fragaria x ananassa
FAN15G0209 Fragaria x ananassa
FAN15G3013 Fragaria x ananassa
FAN15G3378 Fragaria x ananassa
FAN20G0548 Fragaria x ananassa
FAN20G1174 Fragaria x ananassa
FAN20G1266 Fragaria x ananassa
FAN24G0945 Fragaria x ananassa
FAN24G1896 Fragaria x ananassa
FAN27G0836 Fragaria x ananassa
FvH4_2g11670 Fragaria vesca
FvH4_2g15770 Fragaria vesca
Glyma.04G182900 Glycine max
Glyma.10G284200 Glycine max
Gohir.A09G171650 Gossypium hirsutum
Gohir.A09G171700 Gossypium hirsutum
Gohir.A12G035900 Gossypium hirsutum
Gohir.D09G167401 Gossypium hirsutum
Gohir.D12G036650 Gossypium hirsutum
Gohir.D12G036700 Gossypium hirsutum
Gorai.006G189100 Gossypium raimondii
Gorai.008G037900 Gossypium raimondii
GSVIVG01007755001 Vitis vinifera
GSVIVG01023964001 Vitis vinifera
HanXRQChr02g0035091 Helianthus annuus
HanXRQChr02g0036361 Helianthus annuus
HanXRQChr05g0141851 Helianthus annuus
Haze_02089 Corylus avellana
Haze_07473 Corylus avellana
Hma1.2p1_0032F.1_g019090 Hydrangea macrophylla
Hma1.2p1_0660F.1_g197810 Hydrangea macrophylla
Hma1.2p1_0701F.1_g205860 Hydrangea macrophylla
Hma1.2p1_3947F.1_g338046 Hydrangea macrophylla
HPP92_004868 Vanilla planifolia
HPP92_022387 Vanilla planifolia
HPP92_022388 Vanilla planifolia
Hund00010 Selenicereus undatus
Hund02744 Selenicereus undatus
Hund02745 Selenicereus undatus
Lalb_Chr06g0163781 Lupinus albus
Lalb_Chr08g0236501 Lupinus albus
Lalb_Chr08g0236511 Lupinus albus
Lalb_Chr08g0236521 Lupinus albus
Lj1g0011912 Lotus japonicus
Lj5A175T98 Lonicera japonica
Lj5g0001935 Lotus japonicus
Lj9A448G32 Lonicera japonica
Lj9A448G34 Lonicera japonica
Lj9A448G35 Lonicera japonica
Lj9A448T39 Lonicera japonica
Lsat_1_v5_gn_1_27061 Lactuca sativa
Lsat_1_v5_gn_3_6601 Lactuca sativa
Lsat_1_v5_gn_6_39261 Lactuca sativa
Lsat_1_v5_gn_9_85140 Lactuca sativa
Manes.04G069900 Manihot esculenta
Manes.06G105000 Manihot esculenta
Mapoly0026s0077 Marchantia polymorpha
Mapoly0081s0051 Marchantia polymorpha
MBI08_g20886_MAGBIO Magnolia biondii
MBI10_g06737_MAGBIO Magnolia biondii
MBI10_g06738_MAGBIO Magnolia biondii
MBI10_g06739_MAGBIO Magnolia biondii
MBI11_g23001_MAGBIO Magnolia biondii
MBI18_g09841_MAGBIO Magnolia biondii
MCO16G510 Micromonas commoda
MD05G1126600 Malus domestica
MD06G1173700 Malus domestica
MD10G1129500 Malus domestica
MD10G1129600 Malus domestica
MD10G1129700 Malus domestica
MD10G1129800 Malus domestica
MD14G1180200 Malus domestica
Medtr1g113830 Medicago truncatula
Medtr3g077860 Medicago truncatula
Medtr3g110870 Medicago truncatula
Medtr4g071250 Medicago truncatula
Medtr7g026890 Medicago truncatula
MELO3C013324.2 Cucumis melo
MELO3C017087.2 Cucumis melo
Migut.B00045 Erythranthe guttata
Migut.C00312 Erythranthe guttata
Migut.I00009 Erythranthe guttata
MSTRG.11455 Avicennia marina
Nitab4.5_0000785g0010 Nicotiana tabacum
Nitab4.5_0000984g0080 Nicotiana tabacum
Nitab4.5_0000984g0090 Nicotiana tabacum
Nitab4.5_0004557g0050 Nicotiana tabacum
Nitab4.5_0004867g0090 Nicotiana tabacum
Nn4g22757 Nelumbo nucifera
Nn6g31886 Nelumbo nucifera
Oeu016387.4 Olea europaea
Oeu028956.2 Olea europaea
Os01g0106700 Oryza sativa ssp. japonica
Os06g0724700 Oryza sativa ssp. japonica
Peaxi162Scf00009g00112 Petunia axillaris
Peaxi162Scf00009g00114 Petunia axillaris
Peaxi162Scf00362g00442 Petunia axillaris
PGR044G0033 Punica granatum
PGR142G2610 Punica granatum
PGSC0003DMG401018643 Solanum tuberosum
PGSC0003DMG402018643 Solanum tuberosum
Phvul.007G016800 Phaseolus vulgaris
Phvul.007G016900 Phaseolus vulgaris
Phvul.007G017000 Phaseolus vulgaris
Phvul.009G178400 Phaseolus vulgaris
Potri.004G179000 Populus trichocarpa
Potri.015G076650 Populus trichocarpa
Pp3c2_23700 Physcomitrium patens
Pp3c6_3460 Physcomitrium patens
PRCOL_00001368 Prasinoderma coloniale
PRCOL_00001369 Prasinoderma coloniale
Prupe.5G173600 Prunus persica
Prupe.8G170300 Prunus persica
Psat0s2951g0040 Pisum sativum
Psat2g049960 Pisum sativum
Psat5g114800 Pisum sativum
Psat6g232760 Pisum sativum
PSO017G2470 Papaver somniferum
PSO063G0326 Papaver somniferum
PSO063G7150 Papaver somniferum
PSO170G1896 Papaver somniferum
PSO170G5954 Papaver somniferum
PSO210G4774 Papaver somniferum
PSO421G0126 Papaver somniferum
PSO421G0641 Papaver somniferum
PSO675G3963 Papaver somniferum
PSO732G0258 Papaver somniferum
QL01p024072 Quercus lobata
QL01p024955 Quercus lobata
QL05p026262 Quercus lobata
QL07p004594 Quercus lobata
QL07p004610 Quercus lobata
QL07p004626 Quercus lobata
QL10p011601 Quercus lobata
QL11p050057 Quercus lobata
QL11p050211 Quercus lobata
QL11p052526 Quercus lobata
QL11p052553 Quercus lobata
RcHm_v2.0_Chr6g0271131 Rosa chinensis
RcHm_v2.0_Chr6g0279121 Rosa chinensis
Rhsim02G0102400 Rhododendron simsii
Rhsim02G0102500 Rhododendron simsii
Rhsim02G0102600 Rhododendron simsii
Rhsim02G0151200 Rhododendron simsii
Rhsim06G0124500 Rhododendron simsii
Rhsim06G0125100 Rhododendron simsii
Rhsim06G0125200 Rhododendron simsii
Rhsim08G0157900 Rhododendron simsii
Rhsim08G0172200 Rhododendron simsii
Rhsim11G0078400 Rhododendron simsii
Rhsim11G0194400 Rhododendron simsii
Sabra04G0120500 Salix brachista
Sabra15G0101700 Salix brachista
SalBow5G1563 Salvia bowleyana
Sc04g0001800 Simmondsia chinensis
Sc18g0006200 Simmondsia chinensis
Sed0017558 Sechium edule
Sed0023277 Sechium edule
SEGI_06250 Sequoiadendron giganteum
SEGI_10258 Sequoiadendron giganteum
SEGI_11837 Sequoiadendron giganteum
SEGI_17988 Sequoiadendron giganteum
SEGI_19461 Sequoiadendron giganteum
SEGI_22749 Sequoiadendron giganteum
SEGI_23063 Sequoiadendron giganteum
SEGI_26648 Sequoiadendron giganteum
SEGI_27751 Sequoiadendron giganteum
SEGI_28316 Sequoiadendron giganteum
SEGI_29837 Sequoiadendron giganteum
SEGI_30734 Sequoiadendron giganteum
SEGI_35062 Sequoiadendron giganteum
SEGI_36815 Sequoiadendron giganteum
SGA_v2.0_scaffold137G35103 Striga asiatica
SGA_v2.0_scaffold32G13315 Striga asiatica
SGA_v2.0_scaffold6G03244 Striga asiatica
SGA_v2.0_scaffold90G27914 Striga asiatica
SGA_v2.0_scaffold90G27920 Striga asiatica
SGA_v2.0_scaffold990G53774 Striga asiatica
SHI16983 Sapria himalayana
SHI16986 Sapria himalayana
SHI16987 Sapria himalayana
SHI16990 Sapria himalayana
SHI16992 Sapria himalayana
SHI16993 Sapria himalayana
SHI16994 Sapria himalayana
SHI16997 Sapria himalayana
SHI16999 Sapria himalayana
SHI17000 Sapria himalayana
SHI17001 Sapria himalayana
SHI17002 Sapria himalayana
SHI17003 Sapria himalayana
SHI17004 Sapria himalayana
SHI17005 Sapria himalayana
SHI17006 Sapria himalayana
SHI17017 Sapria himalayana
SMO203G0188 Selaginella moellendorffii
SMO298G0008 Selaginella moellendorffii
SMO298G0036 Selaginella moellendorffii
Solyc01g111870.3 Solanum lycopersicum
Solyc03g112950.4 Solanum lycopersicum
Solyc07g150133.1 Solanum lycopersicum
Sopen01g053910 Solanum pennellii
Sopen03g032020 Solanum pennellii
Sopen06g013000 Solanum pennellii
Sp4g00080 Schrenkiella parvula
Sp5g13840 Schrenkiella parvula
TAR628G1453 Trochodendron aralioides
TAR629G1256 Trochodendron aralioides
TAR629G2960 Trochodendron aralioides
THA.LOC104818218 Tarenaya hassleriana
Thecc.02G053500 Theobroma cacao
Thecc.03G012800 Theobroma cacao
Thhalv10010050m.g Eutrema salsugineum
Thhalv10027615m.g Eutrema salsugineum
TPR.G13225 Trifolium pratense
TPR.G18423 Trifolium pratense
TPR.G18427 Trifolium pratense
TPR.G21158 Trifolium pratense
TPR.G2452 Trifolium pratense
TPR.G2476 Trifolium pratense
TPR.G2477 Trifolium pratense
TPR.G2496 Trifolium pratense
TPR.G29226 Trifolium pratense
TPR.G29227 Trifolium pratense
TPR.G494 Trifolium pratense
TPR.G5903 Trifolium pratense
TPR.G5917 Trifolium pratense
TPR.G6034 Trifolium pratense
TPR.G6035 Trifolium pratense
TPR.G6095 Trifolium pratense
TWI14G0283 Tripterygium wilfordii
TWI79G0733 Tripterygium wilfordii
unitig_0.g1441 Utricularia gibba
unitig_0.g1442 Utricularia gibba
unitig_0.g1443 Utricularia gibba
unitig_21.g20845 Utricularia gibba
vmacro02070 Vaccinium macrocarpon
vmacro02297 Vaccinium macrocarpon
vmacro19388 Vaccinium macrocarpon
vmacro19389 Vaccinium macrocarpon
VMungo0464G0876 Vigna mungo
VMungo0720G2261 Vigna mungo
VMungo1309G0494 Vigna mungo
VMungo1309G0781 Vigna mungo
VMungo1309G1088 Vigna mungo
VMungo1309G1151 Vigna mungo
VMungo1309G2093 Vigna mungo
Zm00001eb126710 Zea mays
Zm00001eb228310 Zea mays

User provided reference genes

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