Gene: Carub.0005s1431
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0005s1431
- Transcript Identifier Carub.0005s1431.1
- Gene Type Coding gene
- Location scaffold_5 : 7855728-7881892 : positive
Gene Family Information
- ID HOM05D001734
- #Genes/#Species 373/100
- Phylogenetic origin
- ID ORTHO05D003483
- #Genes/#Species 221/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0005s1431.v1.1
- pacid 39224558
- synonym Carubv10016554m.g
Descriptions
- Description K04728 - ataxia telangiectasia mutated family protein (ATM, TEL1)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045003 | ISO | PLAZA Integrative Orthology | double-strand break repair via synthesis-dependent strand annealing | AT3G48190 |
| GO:0032204 | ISO | PLAZA Integrative Orthology | regulation of telomere maintenance | AT3G48190 |
| GO:0010212 | ISO | PLAZA Integrative Orthology | response to ionizing radiation | AT3G48190 |
| GO:0010332 | ISO | PLAZA Integrative Orthology | response to gamma radiation | AT3G48190 |
| GO:0032504 | ISO | PLAZA Integrative Orthology | multicellular organism reproduction | AT3G48190 |
| GO:0051321 | ISO | PLAZA Integrative Orthology | meiotic cell cycle | AT3G48190 |
| GO:0007129 | ISO | PLAZA Integrative Orthology | homologous chromosome pairing at meiosis | AT3G48190 |
| GO:0043247 | ISO | PLAZA Integrative Orthology | telomere maintenance in response to DNA damage | AT3G48190 |
| GO:0006303 | ISO | PLAZA Integrative Orthology | double-strand break repair via nonhomologous end joining | AT3G48190 |
| GO:0033044 | ISO | PLAZA Integrative Orthology | regulation of chromosome organization | AT3G48190 |
| GO:0007131 | ISO | PLAZA Integrative Orthology | reciprocal meiotic recombination | AT3G48190 |
| GO:0008380 | ISO | PLAZA Integrative Orthology | RNA splicing | AT3G48190 |
| GO:2001020 | ISO | PLAZA Integrative Orthology | regulation of response to DNA damage stimulus | AT3G48190 |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006974 | IEA | InterPro | cellular response to DNA damage stimulus |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000285 | ISO | PLAZA Integrative Orthology | 1-phosphatidylinositol-3-phosphate 5-kinase activity | AT3G48190 |
| GO:0004674 | IEA | InterPro | protein serine/threonine kinase activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0016301 | IEA | InterPro | kinase activity |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011009 | Protein kinase-like domain superfamily |
| IPR000403 | Phosphatidylinositol 3-/4-kinase, catalytic domain |
| IPR038980 | Serine/threonine-protein kinase ATM, plant |
| IPR036940 | Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily |
| IPR044107 | ATM, catalytic domain |
| IPR003151 | PIK-related kinase, FAT |
| IPR003152 | FATC domain |
| Mapman id | Description |
|---|---|
| 14.1.1 | DNA damage response.DNA damage sensing and signalling.DNA double-strand break response kinase (ATM) |