Gene: Sopen06g013000

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g013000
  • Transcript Identifier Sopen06g013000.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 33935768-33936990 : positive

Gene Family Information

  • ID HOM05D001734
  • #Genes/#Species 373/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g013000.1

Descriptions

  • Description encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Characterization of mutants suggest a role in repairing DNA in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres. | ataxia-telangiectasia mutated (ATM) | FUNCTIONS IN: 1-phosphatidylinositol-3-phosphate 5-kinase activity | INVOLVED IN: in 8 processes | LOCATED IN: chloroplast | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic , PIK-related kinase, FAT , Ataxia-Telangiectasia Mutated , PIK-related kinase , PWWP , PIK-related kinase, FATC , Phosphatidylinositol 3/4-kinase, conserved site , Protein kinase-like domain | BEST Arabidopsis thaliana protein match is: Ataxia telangiectasia-mutated and RAD3-related
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006974
IEA
InterProcellular response to DNA damage stimulus

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004674
IEA
InterProprotein serine/threonine kinase activity
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D001734
GO:0016301
ISO
PLAZA Homology (enrichment)kinase activity HOM05D001734

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038980 Serine/threonine-protein kinase ATM, plant
IPR011009 Protein kinase-like domain superfamily
Mapman id Description
35.1 not assigned.annotated