Gene: Sopen03g032020

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g032020
  • Transcript Identifier Sopen03g032020.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 67541167-67594240 : positive

Gene Family Information

  • ID HOM05D001734
  • #Genes/#Species 373/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g032020.1

Descriptions

  • Description encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Characterization of mutants suggest a role in repairing DNA in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres. | ataxia-telangiectasia mutated (ATM) | FUNCTIONS IN: 1-phosphatidylinositol-3-phosphate 5-kinase activity | INVOLVED IN: in 8 processes | LOCATED IN: chloroplast | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic , PIK-related kinase, FAT , Ataxia-Telangiectasia Mutated , PIK-related kinase , PWWP , PIK-related kinase, FATC , Phosphatidylinositol 3/4-kinase, conserved site , Protein kinase-like domain | BEST Arabidopsis thaliana protein match is: Ataxia telangiectasia-mutated and RAD3-related
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045003
ISO
PLAZA Integrative Orthologydouble-strand break repair via synthesis-dependent strand annealing AT3G48190
GO:0032204
ISO
PLAZA Integrative Orthologyregulation of telomere maintenance AT3G48190
GO:0010212
ISO
PLAZA Integrative Orthologyresponse to ionizing radiation AT3G48190
GO:0010332
ISO
PLAZA Integrative Orthologyresponse to gamma radiation AT3G48190
GO:0032504
ISO
PLAZA Integrative Orthologymulticellular organism reproduction AT3G48190
GO:0051321
ISO
PLAZA Integrative Orthologymeiotic cell cycle AT3G48190
GO:0007129
ISO
PLAZA Integrative Orthologyhomologous chromosome pairing at meiosis AT3G48190
GO:0043247
ISO
PLAZA Integrative Orthologytelomere maintenance in response to DNA damage AT3G48190
GO:0006303
ISO
PLAZA Integrative Orthologydouble-strand break repair via nonhomologous end joining AT3G48190
GO:0033044
ISO
PLAZA Integrative Orthologyregulation of chromosome organization AT3G48190
GO:0007131
ISO
PLAZA Integrative Orthologyreciprocal meiotic recombination AT3G48190
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT3G48190
GO:2001020
ISO
PLAZA Integrative Orthologyregulation of response to DNA damage stimulus AT3G48190
GO:0006281
IEA
InterProDNA repair
GO:0006974
IEA
InterProcellular response to DNA damage stimulus

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000285
ISO
PLAZA Integrative Orthology1-phosphatidylinositol-3-phosphate 5-kinase activity AT3G48190
GO:0005515
IEA
InterProprotein binding
GO:0016301
IEA
InterProkinase activity
GO:0004674
IEA
InterProprotein serine/threonine kinase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011009 Protein kinase-like domain superfamily
IPR003152 FATC domain
IPR021668 Telomere-length maintenance and DNA damage repair
IPR000403 Phosphatidylinositol 3-/4-kinase, catalytic domain
IPR038980 Serine/threonine-protein kinase ATM, plant
IPR016024 Armadillo-type fold
IPR044107 ATM, catalytic domain
IPR036940 Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily
Mapman id Description
14.1.1 DNA damage response.DNA damage sensing and signalling.DNA double-strand break response kinase (ATM)