Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p03470 Brassica napus
A05p21130 Brassica napus
A08p04890 Brassica napus
Aa31LG10G5460 Aethionema arabicum
Aa31LG3G18650 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3709 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3356 Anthoceros agrestis
Actinidia04849 Actinidia chinensis
Actinidia09199 Actinidia chinensis
Actinidia09202 Actinidia chinensis
Actinidia09203 Actinidia chinensis
Actinidia09209 Actinidia chinensis
Actinidia09210 Actinidia chinensis
Actinidia09211 Actinidia chinensis
Actinidia09242 Actinidia chinensis
Actinidia09243 Actinidia chinensis
Actinidia09244 Actinidia chinensis
Actinidia18515 Actinidia chinensis
Actinidia24557 Actinidia chinensis
Ah.02g113880 Amaranthus hybridus
Ah.02g113890 Amaranthus hybridus
Ah.07g203550 Amaranthus hybridus
Ah.11g048050 Amaranthus hybridus
AL1G54910 Arabidopsis lyrata
AL6G18150 Arabidopsis lyrata
Aqoxy2G02487 Aquilegia oxysepala
Aqoxy3G00452 Aquilegia oxysepala
Aqoxy3G00457 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0H98Z4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1X400K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3PX28T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.46C2EF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5JZ0DR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5ZM33J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AE44IX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C00RGM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C6KQRR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D3EHI2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DYPB85 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GZJK2B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IJDX12 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J3RYPU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L3732C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L3GI5E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L93FEN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LSIV7S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M5C3PT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P6110R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QKVB7G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R8ERLJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RDG2VZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UP3S85 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V6XLN1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VMQ9AF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VY9WGI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WH471K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XJG2SM Arachis hypogaea
AT1G48310 Arabidopsis thaliana
AT5G07810 Arabidopsis thaliana
ATR0030G060 Amborella trichopoda
ATR0064G032 Amborella trichopoda
ATR0064G082 Amborella trichopoda
ATR0796G053 Amborella trichopoda
Atru.chr4.3178 Acer truncatum
Atru.chr4.3179 Acer truncatum
Atru.chr9.280 Acer truncatum
Atru.chr9.282 Acer truncatum
AUR62002539 Chenopodium quinoa
AUR62008488 Chenopodium quinoa
AUR62008489 Chenopodium quinoa
AUR62021607 Chenopodium quinoa
AUR62021608 Chenopodium quinoa
AUR62023654 Chenopodium quinoa
BcaB02g11412 Brassica carinata
BcaC05g27587 Brassica carinata
BolC3t12927H Brassica oleracea
BolC5t32283H Brassica oleracea
BraA03t09697Z Brassica rapa
BraA05t21018Z Brassica rapa
BraA08t32515Z Brassica rapa
C03p03890 Brassica napus
C05p35670 Brassica napus
CAN.G479.33 Capsicum annuum
CAN.G479.34 Capsicum annuum
CAN.G484.96 Capsicum annuum
CANSAT78G0587 Cannabis sativa
CANSAT80G0757 Cannabis sativa
CANSAT80G0851 Cannabis sativa
CARHR037930 Cardamine hirsuta
CARHR205370 Cardamine hirsuta
Carub.0001s3744 Capsella rubella
Carub.0006s0673 Capsella rubella
Ca_13626_v3 Cicer arietinum L.
Ca_13629_v3 Cicer arietinum L.
Ca_13630_v3 Cicer arietinum L.
Ca_21367_v3 Cicer arietinum L.
Ca_21793_v3 Cicer arietinum L.
CBR_g23187 Chara braunii
CBR_g29672 Chara braunii
CBR_g49701 Chara braunii
CBR_g49703 Chara braunii
CBR_g49704 Chara braunii
Cc00_g02240 Coffea canephora
Cc00_g02250 Coffea canephora
Cc00_g14900 Coffea canephora
Cc00_g14910 Coffea canephora
Cc03_g00030 Coffea canephora
CDE04G0389 Ceratophyllum demersum
CDE07G0117 Ceratophyllum demersum
CDE07G0655 Ceratophyllum demersum
CDE07G0766 Ceratophyllum demersum
CDE11G0774 Ceratophyllum demersum
Cfa015741 Carpinus fangiana
Cfa019293 Carpinus fangiana
Ciclev10004488m.g Citrus clementina
Ciclev10018469m.g Citrus clementina
Ciclev10018579m.g Citrus clementina
CiPaw.01G127900 Carya illinoinensis
CiPaw.11G049400 Carya illinoinensis
CiPaw.11G049500 Carya illinoinensis
CiPaw.11G049600 Carya illinoinensis
ClCG05G006880 Citrullus lanatus
ClCG06G015860 Citrullus lanatus
ClCG06G015870 Citrullus lanatus
COL.COLO4_28308 Corchorus olitorius
COL.COLO4_36610 Corchorus olitorius
COL.COLO4_36884 Corchorus olitorius
COL.COLO4_36885 Corchorus olitorius
Cpa.g.sc146.11 Carica papaya
Cpa.g.sc146.12 Carica papaya
Cpa.g.sc2632.1 Carica papaya
Cpa.g.sc94.1 Carica papaya
Cpa.g.sc94.3 Carica papaya
Cpa.g.sc94.4 Carica papaya
Cre05.g236950 Chlamydomonas reinhardtii
Cre12.g494200 Chlamydomonas reinhardtii
Cre16.g679400 Chlamydomonas reinhardtii
CsaV3_1G002690 Cucumis sativus L.
CsaV3_1G002700 Cucumis sativus L.
CsaV3_3G015550 Cucumis sativus L.
CSS0007026 Camellia sinensis var. sinensis
CSS0042912 Camellia sinensis var. sinensis
CSS0045245 Camellia sinensis var. sinensis
DCAR_026018 Daucus carota
DCAR_026929 Daucus carota
DCAR_026933 Daucus carota
DCAR_026940 Daucus carota
DCAR_031671 Daucus carota
Dinv10682 Davidia involucrata
Dinv10683 Davidia involucrata
Dinv24721 Davidia involucrata
Dinv38776 Davidia involucrata
Dinv38777 Davidia involucrata
Dinv38778 Davidia involucrata
Duzib068G0733 Durio zibethinus
Duzib235G1161 Durio zibethinus
ECA246G1105 Erigeron canadensis
ECA247G0462 Erigeron canadensis
EL10Ac3g06234 Beta vulgaris
EL10Ac5g11090 Beta vulgaris
Eucgr.B00565 Eucalyptus grandis
Eucgr.B00566 Eucalyptus grandis
Eucgr.H04132 Eucalyptus grandis
FAN08G0876 Fragaria x ananassa
FAN12G1186 Fragaria x ananassa
FAN13G3105 Fragaria x ananassa
FAN17G2195 Fragaria x ananassa
FAN18G2329 Fragaria x ananassa
FvH4_4g21690 Fragaria vesca
FvH4_5g14340 Fragaria vesca
FvH4_5g14341 Fragaria vesca
Glyma.05G023300 Glycine max
Glyma.06G199800 Glycine max
Glyma.13G118200 Glycine max
Glyma.17G041700 Glycine max
Glyma.17G076400 Glycine max
Gohir.A03G068966 Gossypium hirsutum
Gohir.A03G069032 Gossypium hirsutum
Gohir.A06G112800 Gossypium hirsutum
Gohir.A11G032900 Gossypium hirsutum
Gohir.D03G095500 Gossypium hirsutum
Gohir.D06G117500 Gossypium hirsutum
Gohir.D11G036200 Gossypium hirsutum
Gorai.003G100200 Gossypium raimondii
Gorai.007G039000 Gossypium raimondii
Gorai.010G135100 Gossypium raimondii
GSVIVG01007916001 Vitis vinifera
GSVIVG01007917001 Vitis vinifera
GSVIVG01017700001 Vitis vinifera
HanXRQChr04g0107361 Helianthus annuus
HanXRQChr04g0126851 Helianthus annuus
HanXRQChr05g0148951 Helianthus annuus
HanXRQChr14g0426861 Helianthus annuus
Haze_00754 Corylus avellana
Haze_00755 Corylus avellana
Haze_00775 Corylus avellana
Haze_07675 Corylus avellana
Haze_07676 Corylus avellana
Haze_08734 Corylus avellana
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla
Hma1.2p1_0322F.1_g124930 Hydrangea macrophylla
Hma1.2p1_1067F.1_g253855 Hydrangea macrophylla
Hma1.2p1_1449F.1_g284110 Hydrangea macrophylla
HPP92_013436 Vanilla planifolia
HPP92_013437 Vanilla planifolia
HPP92_020541 Vanilla planifolia
Hund02613 Selenicereus undatus
Hund09848 Selenicereus undatus
Hund22642 Selenicereus undatus
Lalb_Chr13g0299021 Lupinus albus
Lalb_Chr13g0302981 Lupinus albus
Lalb_Chr22g0355251 Lupinus albus
Lj1g0003467 Lotus japonicus
Lj3C842G5 Lonicera japonica
Lj4g0011824 Lotus japonicus
Lj4g0019577 Lotus japonicus
Lj5A106T69 Lonicera japonica
Lj5A106T70 Lonicera japonica
Lj9A469T58 Lonicera japonica
Lj9A469T59 Lonicera japonica
Lj9C469T4 Lonicera japonica
Lsat_1_v5_gn_1_13760 Lactuca sativa
Lsat_1_v5_gn_5_21720 Lactuca sativa
Lsat_1_v5_gn_6_118341 Lactuca sativa
Lsat_1_v5_gn_7_27961 Lactuca sativa
Manes.03G212800 Manihot esculenta
Manes.06G087600 Manihot esculenta
Manes.06G087800 Manihot esculenta
Mapoly0058s0117 Marchantia polymorpha
MBI19_g30290_MAGBIO Magnolia biondii
MCO15G104 Micromonas commoda
MCO15G340 Micromonas commoda
MD13G1156900 Malus domestica
MD14G1208200 Malus domestica
MD14G1208300 Malus domestica
MD14G1208500 Malus domestica
MD16G1134000 Malus domestica
Medtr4g109230 Medicago truncatula
Medtr4g124090 Medicago truncatula
MELO3C006754.2 Cucumis melo
MELO3C017204.2 Cucumis melo
MELO3C017205.2 Cucumis melo
Migut.C00071 Erythranthe guttata
Migut.D01671 Erythranthe guttata
Migut.D01672 Erythranthe guttata
Migut.N03098 Erythranthe guttata
MSTRG.22009 Avicennia marina
MSTRG.9601 Avicennia marina
MSTRG.9602 Avicennia marina
Nitab4.5_0000978g0050 Nicotiana tabacum
Nitab4.5_0002881g0060 Nicotiana tabacum
Nitab4.5_0002881g0120 Nicotiana tabacum
Nitab4.5_0004511g0020 Nicotiana tabacum
Nitab4.5_0004511g0090 Nicotiana tabacum
Nitab4.5_0012375g0010 Nicotiana tabacum
Nitab4.5_0020510g0010 Nicotiana tabacum
Nn1g01396 Nelumbo nucifera
Nn1g01397 Nelumbo nucifera
Nn4g23350 Nelumbo nucifera
Nn4g23353 Nelumbo nucifera
Oeu002203.3 Olea europaea
Oeu002204.1 Olea europaea
Oeu002205.2 Olea europaea
Oeu032213.1 Olea europaea
Oeu032214.1 Olea europaea
Oeu032215.1 Olea europaea
Os06g0235300 Oryza sativa ssp. japonica
Os07g0598300 Oryza sativa ssp. japonica
Os07g0636200 Oryza sativa ssp. japonica
Peaxi162Scf00201g00021 Petunia axillaris
Peaxi162Scf00201g00024 Petunia axillaris
Peaxi162Scf00323g00935 Petunia axillaris
PGR004G0096 Punica granatum
PGR083G0537 Punica granatum
PGR083G1883 Punica granatum
PGSC0003DMG400006818 Solanum tuberosum
PGSC0003DMG400024553 Solanum tuberosum
PGSC0003DMG400024655 Solanum tuberosum
Phvul.003G123100 Phaseolus vulgaris
Phvul.003G186700 Phaseolus vulgaris
Phvul.009G190731 Phaseolus vulgaris
Potri.010G003300 Populus trichocarpa
Potri.012G066900 Populus trichocarpa
Potri.012G067000 Populus trichocarpa
Pp3c11_9170 Physcomitrium patens
Pp3c16_16990 Physcomitrium patens
Pp3c1_13300 Physcomitrium patens
Pp3c1_13308 Physcomitrium patens
Pp3c1_9760 Physcomitrium patens
PRCOL_00000483 Prasinoderma coloniale
PRCOL_00003710 Prasinoderma coloniale
PRCOL_00003770 Prasinoderma coloniale
Prupe.1G103200 Prunus persica
Prupe.5G200300 Prunus persica
Prupe.5G200400 Prunus persica
Psat0s1206g0200 Pisum sativum
Psat2g071520 Pisum sativum
Psat2g071560 Pisum sativum
Psat4g048680 Pisum sativum
Psat4g170680 Pisum sativum
Psat5g198440 Pisum sativum
PSO017G4168 Papaver somniferum
PSO017G4474 Papaver somniferum
PSO170G0915 Papaver somniferum
PSO445G0012 Papaver somniferum
PSO478G4640 Papaver somniferum
QL06p014511 Quercus lobata
QL10p018629 Quercus lobata
RcHm_v2.0_Chr4g0427901 Rosa chinensis
RcHm_v2.0_Chr7g0182391 Rosa chinensis
RcHm_v2.0_Chr7g0182421 Rosa chinensis
Rhsim04G0249200 Rhododendron simsii
Rhsim08G0149500 Rhododendron simsii
Rhsim08G0149700 Rhododendron simsii
Sabra10G0002600 Salix brachista
Sabra12G0048100 Salix brachista
Sabra12G0048200 Salix brachista
SalBow6G2708 Salvia bowleyana
SalBow7G3498 Salvia bowleyana
SalBow7G3861 Salvia bowleyana
Sc12g0006560 Simmondsia chinensis
Sc12g0006570 Simmondsia chinensis
Sc25g0001840 Simmondsia chinensis
Sed0002195 Sechium edule
Sed0007966 Sechium edule
Sed0027646 Sechium edule
SEGI_05145 Sequoiadendron giganteum
SEGI_10628 Sequoiadendron giganteum
SEGI_25363 Sequoiadendron giganteum
SEGI_26199 Sequoiadendron giganteum
SEGI_29143 Sequoiadendron giganteum
SEGI_38041 Sequoiadendron giganteum
SGA_v2.0_scaffold322G48597 Striga asiatica
SGA_v2.0_scaffold3G01735 Striga asiatica
SGA_v2.0_scaffold65G22108 Striga asiatica
SHI26980 Sapria himalayana
SHI26981 Sapria himalayana
SMO117G0045 Selaginella moellendorffii
SMO358G0589 Selaginella moellendorffii
SMO364G0824 Selaginella moellendorffii
Solyc03g115510.3 Solanum lycopersicum
Solyc03g115530.4 Solanum lycopersicum
Solyc12g098860.2 Solanum lycopersicum
Sopen03g034510 Solanum pennellii
Sopen03g034520 Solanum pennellii
Sopen12g033610 Solanum pennellii
Sp1g35260 Schrenkiella parvula
Sp6g35120 Schrenkiella parvula
TAR362G1045 Trochodendron aralioides
TAR371G0783 Trochodendron aralioides
TAR371G1295 Trochodendron aralioides
TAR376G0971 Trochodendron aralioides
TAR629G0913 Trochodendron aralioides
TAR629G3362 Trochodendron aralioides
THA.LOC104802617 Tarenaya hassleriana
THA.LOC104818327 Tarenaya hassleriana
Thecc.03G096600 Theobroma cacao
Thecc.03G096700 Theobroma cacao
Thecc.05G189900 Theobroma cacao
Thhalv10011287m.g Eutrema salsugineum
Thhalv10012481m.g Eutrema salsugineum
TPR.G12256 Trifolium pratense
TPR.G12547 Trifolium pratense
TPR.G2046 Trifolium pratense
TWI15G0866 Tripterygium wilfordii
TWI15G1152 Tripterygium wilfordii
TWI77G0300 Tripterygium wilfordii
unitig_0.g11 Utricularia gibba
unitig_0.g12 Utricularia gibba
unitig_37.g12720 Utricularia gibba
unitig_37.g12721 Utricularia gibba
unitig_37.g12722 Utricularia gibba
unitig_8.g3632 Utricularia gibba
vmacro08016 Vaccinium macrocarpon
vmacro17583 Vaccinium macrocarpon
vmacro17585 Vaccinium macrocarpon
vmacro17586 Vaccinium macrocarpon
VMungo1215G3312 Vigna mungo
VMungo1215G3338 Vigna mungo
VMungo1309G2646 Vigna mungo
VMungo1309G2923 Vigna mungo
Zm00001eb108430 Zea mays
Zm00001eb326710 Zea mays
Zm00001eb328680 Zea mays

User provided reference genes

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