Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001674', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '386', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p03470' => 'bna', 'A05p21130' => 'bna', 'A08p04890' => 'bna', 'Aa31LG10G5460' => 'aar', 'Aa31LG3G18650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3709' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3354' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3356' => 'aag', 'Actinidia04849' => 'ach', 'Actinidia09199' => 'ach', 'Actinidia09202' => 'ach', 'Actinidia09203' => 'ach', 'Actinidia09209' => 'ach', 'Actinidia09210' => 'ach', 'Actinidia09211' => 'ach', 'Actinidia09242' => 'ach', 'Actinidia09243' => 'ach', 'Actinidia09244' => 'ach', 'Actinidia18515' => 'ach', 'Actinidia24557' => 'ach', 'Ah.02g113880' => 'amhyb', 'Ah.02g113890' => 'amhyb', 'Ah.07g203550' => 'amhyb', 'Ah.11g048050' => 'amhyb', 'AL1G54910' => 'aly', 'AL6G18150' => 'aly', 'Aqoxy2G02487' => 'aox', 'Aqoxy3G00452' => 'aox', 'Aqoxy3G00457' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H98Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1X400K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PX28T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46C2EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JZ0DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZM33J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE44IX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C00RGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6KQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3EHI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYPB85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJK2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJDX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3RYPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3732C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3GI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L93FEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSIV7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5C3PT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMN4BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QKVB7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8ERLJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RDG2VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UP3S85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6XLN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMQ9AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VY9WGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WH471K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJG2SM' => 'arhy', 'AT1G48310' => 'ath', 'AT5G07810' => 'ath', 'ATR0030G060' => 'atr', 'ATR0064G032' => 'atr', 'ATR0064G082' => 'atr', 'ATR0796G053' => 'atr', 'Atru.chr4.3178' => 'acertr', 'Atru.chr4.3179' => 'acertr', 'Atru.chr9.280' => 'acertr', 'Atru.chr9.282' => 'acertr', 'AUR62002539' => 'cqu', 'AUR62008488' => 'cqu', 'AUR62008489' => 'cqu', 'AUR62021607' => 'cqu', 'AUR62021608' => 'cqu', 'AUR62023654' => 'cqu', 'BcaB02g11412' => 'bca', 'BcaC05g27587' => 'bca', 'BolC3t12927H' => 'bol', 'BolC5t32283H' => 'bol', 'BraA03t09697Z' => 'bra', 'BraA05t21018Z' => 'bra', 'BraA08t32515Z' => 'bra', 'C03p03890' => 'bna', 'C05p35670' => 'bna', 'CAN.G479.33' => 'can', 'CAN.G479.34' => 'can', 'CAN.G484.96' => 'can', 'CANSAT78G0587' => 'cansat', 'CANSAT80G0757' => 'cansat', 'CANSAT80G0851' => 'cansat', 'CARHR037930' => 'chi', 'CARHR205370' => 'chi', 'Carub.0001s3744' => 'cru', 'Carub.0006s0673' => 'cru', 'Ca_13626_v3' => 'car', 'Ca_13629_v3' => 'car', 'Ca_13630_v3' => 'car', 'Ca_21367_v3' => 'car', 'Ca_21793_v3' => 'car', 'CBR_g23187' => 'cbr', 'CBR_g29672' => 'cbr', 'CBR_g49701' => 'cbr', 'CBR_g49703' => 'cbr', 'CBR_g49704' => 'cbr', 'Cc00_g02240' => 'ccan', 'Cc00_g02250' => 'ccan', 'Cc00_g14900' => 'ccan', 'Cc00_g14910' => 'ccan', 'Cc03_g00030' => 'ccan', 'CDE04G0389' => 'cde', 'CDE07G0117' => 'cde', 'CDE07G0655' => 'cde', 'CDE07G0766' => 'cde', 'CDE11G0774' => 'cde', 'Cfa015741' => 'cfa', 'Cfa019293' => 'cfa', 'Ciclev10004488m.g' => 'ccl', 'Ciclev10018469m.g' => 'ccl', 'Ciclev10018579m.g' => 'ccl', 'CiPaw.01G127900' => 'cil', 'CiPaw.11G049400' => 'cil', 'CiPaw.11G049500' => 'cil', 'CiPaw.11G049600' => 'cil', 'ClCG05G006880' => 'cla', 'ClCG06G015860' => 'cla', 'ClCG06G015870' => 'cla', 'COL.COLO4_28308' => 'col', 'COL.COLO4_36610' => 'col', 'COL.COLO4_36884' => 'col', 'COL.COLO4_36885' => 'col', 'Cpa.g.sc146.11' => 'cpa', 'Cpa.g.sc146.12' => 'cpa', 'Cpa.g.sc2632.1' => 'cpa', 'Cpa.g.sc94.1' => 'cpa', 'Cpa.g.sc94.3' => 'cpa', 'Cpa.g.sc94.4' => 'cpa', 'Cre05.g236950' => 'cre', 'Cre12.g494200' => 'cre', 'Cre16.g679400' => 'cre', 'CsaV3_1G002690' => 'csa', 'CsaV3_1G002700' => 'csa', 'CsaV3_3G015550' => 'csa', 'CSS0007026' => 'camsi', 'CSS0042912' => 'camsi', 'CSS0045245' => 'camsi', 'DCAR_026018' => 'dca', 'DCAR_026929' => 'dca', 'DCAR_026933' => 'dca', 'DCAR_026940' => 'dca', 'DCAR_031671' => 'dca', 'Dinv10682' => 'din', 'Dinv10683' => 'din', 'Dinv24721' => 'din', 'Dinv38776' => 'din', 'Dinv38777' => 'din', 'Dinv38778' => 'din', 'Duzib068G0733' => 'dzi', 'Duzib235G1161' => 'dzi', 'ECA246G1105' => 'eca', 'ECA247G0462' => 'eca', 'EL10Ac3g06234' => 'bvu', 'EL10Ac5g11090' => 'bvu', 'Eucgr.B00565' => 'egr', 'Eucgr.B00566' => 'egr', 'Eucgr.H04132' => 'egr', 'FAN08G0876' => 'fan', 'FAN12G1186' => 'fan', 'FAN13G3105' => 'fan', 'FAN17G2195' => 'fan', 'FAN18G2329' => 'fan', 'FvH4_4g21690' => 'fve', 'FvH4_5g14340' => 'fve', 'FvH4_5g14341' => 'fve', 'Glyma.05G023300' => 'gma', 'Glyma.06G199800' => 'gma', 'Glyma.13G118200' => 'gma', 'Glyma.17G041700' => 'gma', 'Glyma.17G076400' => 'gma', 'Gohir.A03G068966' => 'ghi', 'Gohir.A03G069032' => 'ghi', 'Gohir.A06G112800' => 'ghi', 'Gohir.A11G032900' => 'ghi', 'Gohir.D03G095500' => 'ghi', 'Gohir.D06G117500' => 'ghi', 'Gohir.D11G036200' => 'ghi', 'Gorai.003G100200' => 'gra', 'Gorai.007G039000' => 'gra', 'Gorai.010G135100' => 'gra', 'GSVIVG01007916001' => 'vvi', 'GSVIVG01007917001' => 'vvi', 'GSVIVG01017700001' => 'vvi', 'HanXRQChr04g0107361' => 'han', 'HanXRQChr04g0126851' => 'han', 'HanXRQChr05g0148951' => 'han', 'HanXRQChr14g0426861' => 'han', 'Haze_00754' => 'cav', 'Haze_00755' => 'cav', 'Haze_00775' => 'cav', 'Haze_07675' => 'cav', 'Haze_07676' => 'cav', 'Haze_08734' => 'cav', 'Hma1.2p1_0060F.1_g033350' => 'hma', 'Hma1.2p1_0322F.1_g124930' => 'hma', 'Hma1.2p1_1067F.1_g253855' => 'hma', 'Hma1.2p1_1449F.1_g284110' => 'hma', 'HPP92_013436' => 'vpl', 'HPP92_013437' => 'vpl', 'HPP92_020541' => 'vpl', 'Hund02613' => 'sun', 'Hund09848' => 'sun', 'Hund22642' => 'sun', 'Lalb_Chr13g0299021' => 'lal', 'Lalb_Chr13g0302981' => 'lal', 'Lalb_Chr22g0355251' => 'lal', 'Lj1g0003467' => 'lja', 'Lj3C842G5' => 'lonja', 'Lj4g0011824' => 'lja', 'Lj4g0019577' => 'lja', 'Lj5A106T69' => 'lonja', 'Lj5A106T70' => 'lonja', 'Lj9A469T58' => 'lonja', 'Lj9A469T59' => 'lonja', 'Lj9C469T4' => 'lonja', 'Lsat_1_v5_gn_1_13760' => 'lsa', 'Lsat_1_v5_gn_5_21720' => 'lsa', 'Lsat_1_v5_gn_6_118341' => 'lsa', 'Lsat_1_v5_gn_7_27961' => 'lsa', 'Manes.03G212800' => 'mes', 'Manes.06G087600' => 'mes', 'Manes.06G087800' => 'mes', 'Mapoly0058s0117' => 'mpo', 'MBI19_g30290_MAGBIO' => 'mbi', 'MCO15G104' => 'mco', 'MCO15G340' => 'mco', 'MD13G1156900' => 'mdo', 'MD14G1208200' => 'mdo', 'MD14G1208300' => 'mdo', 'MD14G1208500' => 'mdo', 'MD16G1134000' => 'mdo', 'Medtr4g109230' => 'mtr', 'Medtr4g124090' => 'mtr', 'MELO3C006754.2' => 'cme', 'MELO3C017204.2' => 'cme', 'MELO3C017205.2' => 'cme', 'Migut.C00071' => 'egut', 'Migut.D01671' => 'egut', 'Migut.D01672' => 'egut', 'Migut.N03098' => 'egut', 'MSTRG.22009' => 'ama', 'MSTRG.9601' => 'ama', 'MSTRG.9602' => 'ama', 'Nitab4.5_0000978g0050' => 'nta', 'Nitab4.5_0002881g0060' => 'nta', 'Nitab4.5_0002881g0120' => 'nta', 'Nitab4.5_0004511g0020' => 'nta', 'Nitab4.5_0004511g0090' => 'nta', 'Nitab4.5_0012375g0010' => 'nta', 'Nitab4.5_0020510g0010' => 'nta', 'Nn1g01396' => 'nnu', 'Nn1g01397' => 'nnu', 'Nn4g23350' => 'nnu', 'Nn4g23353' => 'nnu', 'Oeu002203.3' => 'oeu', 'Oeu002204.1' => 'oeu', 'Oeu002205.2' => 'oeu', 'Oeu032213.1' => 'oeu', 'Oeu032214.1' => 'oeu', 'Oeu032215.1' => 'oeu', 'Os06g0235300' => 'osa', 'Os07g0598300' => 'osa', 'Os07g0636200' => 'osa', 'Peaxi162Scf00201g00021' => 'pax', 'Peaxi162Scf00201g00024' => 'pax', 'Peaxi162Scf00323g00935' => 'pax', 'PGR004G0096' => 'pgr', 'PGR083G0537' => 'pgr', 'PGR083G1883' => 'pgr', 'PGSC0003DMG400006818' => 'stu', 'PGSC0003DMG400024553' => 'stu', 'PGSC0003DMG400024655' => 'stu', 'Phvul.003G123100' => 'pvu', 'Phvul.003G186700' => 'pvu', 'Phvul.009G190731' => 'pvu', 'Potri.010G003300' => 'ptr', 'Potri.012G066900' => 'ptr', 'Potri.012G067000' => 'ptr', 'Pp3c11_9170' => 'ppa', 'Pp3c16_16990' => 'ppa', 'Pp3c1_13300' => 'ppa', 'Pp3c1_13308' => 'ppa', 'Pp3c1_9760' => 'ppa', 'PRCOL_00000483' => 'pco', 'PRCOL_00003710' => 'pco', 'PRCOL_00003770' => 'pco', 'Prupe.1G103200' => 'ppe', 'Prupe.5G200300' => 'ppe', 'Prupe.5G200400' => 'ppe', 'Psat0s1206g0200' => 'psa', 'Psat2g071520' => 'psa', 'Psat2g071560' => 'psa', 'Psat4g048680' => 'psa', 'Psat4g170680' => 'psa', 'Psat5g198440' => 'psa', 'PSO017G4168' => 'pso', 'PSO017G4474' => 'pso', 'PSO170G0915' => 'pso', 'PSO445G0012' => 'pso', 'PSO478G4640' => 'pso', 'QL06p014511' => 'qlo', 'QL10p018629' => 'qlo', 'RcHm_v2.0_Chr4g0427901' => 'rch', 'RcHm_v2.0_Chr7g0182391' => 'rch', 'RcHm_v2.0_Chr7g0182421' => 'rch', 'Rhsim04G0249200' => 'rsi', 'Rhsim08G0149500' => 'rsi', 'Rhsim08G0149700' => 'rsi', 'Sabra10G0002600' => 'sbr', 'Sabra12G0048100' => 'sbr', 'Sabra12G0048200' => 'sbr', 'SalBow6G2708' => 'sbo', 'SalBow7G3498' => 'sbo', 'SalBow7G3861' => 'sbo', 'Sc12g0006560' => 'sci', 'Sc12g0006570' => 'sci', 'Sc25g0001840' => 'sci', 'Sed0002195' => 'sed', 'Sed0007966' => 'sed', 'Sed0027646' => 'sed', 'SEGI_05145' => 'sgi', 'SEGI_10628' => 'sgi', 'SEGI_25363' => 'sgi', 'SEGI_26199' => 'sgi', 'SEGI_29143' => 'sgi', 'SEGI_38041' => 'sgi', 'SGA_v2.0_scaffold322G48597' => 'sas', 'SGA_v2.0_scaffold3G01735' => 'sas', 'SGA_v2.0_scaffold65G22108' => 'sas', 'SHI26980' => 'shi', 'SHI26981' => 'shi', 'SMO117G0045' => 'smo', 'SMO358G0589' => 'smo', 'SMO364G0824' => 'smo', 'Solyc03g115510.3' => 'sly', 'Solyc03g115530.4' => 'sly', 'Solyc12g098860.2' => 'sly', 'Sopen03g034510' => 'spe', 'Sopen03g034520' => 'spe', 'Sopen12g033610' => 'spe', 'Sp1g35260' => 'spa', 'Sp6g35120' => 'spa', 'TAR362G1045' => 'tar', 'TAR371G0783' => 'tar', 'TAR371G1295' => 'tar', 'TAR376G0971' => 'tar', 'TAR629G0913' => 'tar', 'TAR629G3362' => 'tar', 'THA.LOC104802617' => 'tha', 'THA.LOC104818327' => 'tha', 'Thecc.03G096600' => 'tca', 'Thecc.03G096700' => 'tca', 'Thecc.05G189900' => 'tca', 'Thhalv10011287m.g' => 'esa', 'Thhalv10012481m.g' => 'esa', 'TPR.G12256' => 'tpr', 'TPR.G12547' => 'tpr', 'TPR.G2046' => 'tpr', 'TWI15G0866' => 'twi', 'TWI15G1152' => 'twi', 'TWI77G0300' => 'twi', 'unitig_0.g11' => 'ugi', 'unitig_0.g12' => 'ugi', 'unitig_37.g12720' => 'ugi', 'unitig_37.g12721' => 'ugi', 'unitig_37.g12722' => 'ugi', 'unitig_8.g3632' => 'ugi', 'vmacro08016' => 'vma', 'vmacro17583' => 'vma', 'vmacro17585' => 'vma', 'vmacro17586' => 'vma', 'VMungo1215G3312' => 'vmu', 'VMungo1215G3338' => 'vmu', 'VMungo1309G2646' => 'vmu', 'VMungo1309G2923' => 'vmu', 'Zm00001eb108430' => 'zma', 'Zm00001eb326710' => 'zma', 'Zm00001eb328680' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001674', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001674' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001674', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '386', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001674' ) ), 'genes' => array( 'A03p03470' => 'bna', 'A05p21130' => 'bna', 'A08p04890' => 'bna', 'Aa31LG10G5460' => 'aar', 'Aa31LG3G18650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3709' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3354' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3356' => 'aag', 'Actinidia04849' => 'ach', 'Actinidia09199' => 'ach', 'Actinidia09202' => 'ach', 'Actinidia09203' => 'ach', 'Actinidia09209' => 'ach', 'Actinidia09210' => 'ach', 'Actinidia09211' => 'ach', 'Actinidia09242' => 'ach', 'Actinidia09243' => 'ach', 'Actinidia09244' => 'ach', 'Actinidia18515' => 'ach', 'Actinidia24557' => 'ach', 'Ah.02g113880' => 'amhyb', 'Ah.02g113890' => 'amhyb', 'Ah.07g203550' => 'amhyb', 'Ah.11g048050' => 'amhyb', 'AL1G54910' => 'aly', 'AL6G18150' => 'aly', 'Aqoxy2G02487' => 'aox', 'Aqoxy3G00452' => 'aox', 'Aqoxy3G00457' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H98Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1X400K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PX28T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46C2EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JZ0DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZM33J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE44IX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C00RGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6KQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3EHI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYPB85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJK2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJDX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3RYPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3732C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3GI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L93FEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSIV7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5C3PT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMN4BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QKVB7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8ERLJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RDG2VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UP3S85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6XLN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMQ9AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VY9WGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WH471K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJG2SM' => 'arhy', 'AT1G48310' => 'ath', 'AT5G07810' => 'ath', 'ATR0030G060' => 'atr', 'ATR0064G032' => 'atr', 'ATR0064G082' => 'atr', 'ATR0796G053' => 'atr', 'Atru.chr4.3178' => 'acertr', 'Atru.chr4.3179' => 'acertr', 'Atru.chr9.280' => 'acertr', 'Atru.chr9.282' => 'acertr', 'AUR62002539' => 'cqu', 'AUR62008488' => 'cqu', 'AUR62008489' => 'cqu', 'AUR62021607' => 'cqu', 'AUR62021608' => 'cqu', 'AUR62023654' => 'cqu', 'BcaB02g11412' => 'bca', 'BcaC05g27587' => 'bca', 'BolC3t12927H' => 'bol', 'BolC5t32283H' => 'bol', 'BraA03t09697Z' => 'bra', 'BraA05t21018Z' => 'bra', 'BraA08t32515Z' => 'bra', 'C03p03890' => 'bna', 'C05p35670' => 'bna', 'CAN.G479.33' => 'can', 'CAN.G479.34' => 'can', 'CAN.G484.96' => 'can', 'CANSAT78G0587' => 'cansat', 'CANSAT80G0757' => 'cansat', 'CANSAT80G0851' => 'cansat', 'CARHR037930' => 'chi', 'CARHR205370' => 'chi', 'Carub.0001s3744' => 'cru', 'Carub.0006s0673' => 'cru', 'Ca_13626_v3' => 'car', 'Ca_13629_v3' => 'car', 'Ca_13630_v3' => 'car', 'Ca_21367_v3' => 'car', 'Ca_21793_v3' => 'car', 'CBR_g23187' => 'cbr', 'CBR_g29672' => 'cbr', 'CBR_g49701' => 'cbr', 'CBR_g49703' => 'cbr', 'CBR_g49704' => 'cbr', 'Cc00_g02240' => 'ccan', 'Cc00_g02250' => 'ccan', 'Cc00_g14900' => 'ccan', 'Cc00_g14910' => 'ccan', 'Cc03_g00030' => 'ccan', 'CDE04G0389' => 'cde', 'CDE07G0117' => 'cde', 'CDE07G0655' => 'cde', 'CDE07G0766' => 'cde', 'CDE11G0774' => 'cde', 'Cfa015741' => 'cfa', 'Cfa019293' => 'cfa', 'Ciclev10004488m.g' => 'ccl', 'Ciclev10018469m.g' => 'ccl', 'Ciclev10018579m.g' => 'ccl', 'CiPaw.01G127900' => 'cil', 'CiPaw.11G049400' => 'cil', 'CiPaw.11G049500' => 'cil', 'CiPaw.11G049600' => 'cil', 'ClCG05G006880' => 'cla', 'ClCG06G015860' => 'cla', 'ClCG06G015870' => 'cla', 'COL.COLO4_28308' => 'col', 'COL.COLO4_36610' => 'col', 'COL.COLO4_36884' => 'col', 'COL.COLO4_36885' => 'col', 'Cpa.g.sc146.11' => 'cpa', 'Cpa.g.sc146.12' => 'cpa', 'Cpa.g.sc2632.1' => 'cpa', 'Cpa.g.sc94.1' => 'cpa', 'Cpa.g.sc94.3' => 'cpa', 'Cpa.g.sc94.4' => 'cpa', 'Cre05.g236950' => 'cre', 'Cre12.g494200' => 'cre', 'Cre16.g679400' => 'cre', 'CsaV3_1G002690' => 'csa', 'CsaV3_1G002700' => 'csa', 'CsaV3_3G015550' => 'csa', 'CSS0007026' => 'camsi', 'CSS0042912' => 'camsi', 'CSS0045245' => 'camsi', 'DCAR_026018' => 'dca', 'DCAR_026929' => 'dca', 'DCAR_026933' => 'dca', 'DCAR_026940' => 'dca', 'DCAR_031671' => 'dca', 'Dinv10682' => 'din', 'Dinv10683' => 'din', 'Dinv24721' => 'din', 'Dinv38776' => 'din', 'Dinv38777' => 'din', 'Dinv38778' => 'din', 'Duzib068G0733' => 'dzi', 'Duzib235G1161' => 'dzi', 'ECA246G1105' => 'eca', 'ECA247G0462' => 'eca', 'EL10Ac3g06234' => 'bvu', 'EL10Ac5g11090' => 'bvu', 'Eucgr.B00565' => 'egr', 'Eucgr.B00566' => 'egr', 'Eucgr.H04132' => 'egr', 'FAN08G0876' => 'fan', 'FAN12G1186' => 'fan', 'FAN13G3105' => 'fan', 'FAN17G2195' => 'fan', 'FAN18G2329' => 'fan', 'FvH4_4g21690' => 'fve', 'FvH4_5g14340' => 'fve', 'FvH4_5g14341' => 'fve', 'Glyma.05G023300' => 'gma', 'Glyma.06G199800' => 'gma', 'Glyma.13G118200' => 'gma', 'Glyma.17G041700' => 'gma', 'Glyma.17G076400' => 'gma', 'Gohir.A03G068966' => 'ghi', 'Gohir.A03G069032' => 'ghi', 'Gohir.A06G112800' => 'ghi', 'Gohir.A11G032900' => 'ghi', 'Gohir.D03G095500' => 'ghi', 'Gohir.D06G117500' => 'ghi', 'Gohir.D11G036200' => 'ghi', 'Gorai.003G100200' => 'gra', 'Gorai.007G039000' => 'gra', 'Gorai.010G135100' => 'gra', 'GSVIVG01007916001' => 'vvi', 'GSVIVG01007917001' => 'vvi', 'GSVIVG01017700001' => 'vvi', 'HanXRQChr04g0107361' => 'han', 'HanXRQChr04g0126851' => 'han', 'HanXRQChr05g0148951' => 'han', 'HanXRQChr14g0426861' => 'han', 'Haze_00754' => 'cav', 'Haze_00755' => 'cav', 'Haze_00775' => 'cav', 'Haze_07675' => 'cav', 'Haze_07676' => 'cav', 'Haze_08734' => 'cav', 'Hma1.2p1_0060F.1_g033350' => 'hma', 'Hma1.2p1_0322F.1_g124930' => 'hma', 'Hma1.2p1_1067F.1_g253855' => 'hma', 'Hma1.2p1_1449F.1_g284110' => 'hma', 'HPP92_013436' => 'vpl', 'HPP92_013437' => 'vpl', 'HPP92_020541' => 'vpl', 'Hund02613' => 'sun', 'Hund09848' => 'sun', 'Hund22642' => 'sun', 'Lalb_Chr13g0299021' => 'lal', 'Lalb_Chr13g0302981' => 'lal', 'Lalb_Chr22g0355251' => 'lal', 'Lj1g0003467' => 'lja', 'Lj3C842G5' => 'lonja', 'Lj4g0011824' => 'lja', 'Lj4g0019577' => 'lja', 'Lj5A106T69' => 'lonja', 'Lj5A106T70' => 'lonja', 'Lj9A469T58' => 'lonja', 'Lj9A469T59' => 'lonja', 'Lj9C469T4' => 'lonja', 'Lsat_1_v5_gn_1_13760' => 'lsa', 'Lsat_1_v5_gn_5_21720' => 'lsa', 'Lsat_1_v5_gn_6_118341' => 'lsa', 'Lsat_1_v5_gn_7_27961' => 'lsa', 'Manes.03G212800' => 'mes', 'Manes.06G087600' => 'mes', 'Manes.06G087800' => 'mes', 'Mapoly0058s0117' => 'mpo', 'MBI19_g30290_MAGBIO' => 'mbi', 'MCO15G104' => 'mco', 'MCO15G340' => 'mco', 'MD13G1156900' => 'mdo', 'MD14G1208200' => 'mdo', 'MD14G1208300' => 'mdo', 'MD14G1208500' => 'mdo', 'MD16G1134000' => 'mdo', 'Medtr4g109230' => 'mtr', 'Medtr4g124090' => 'mtr', 'MELO3C006754.2' => 'cme', 'MELO3C017204.2' => 'cme', 'MELO3C017205.2' => 'cme', 'Migut.C00071' => 'egut', 'Migut.D01671' => 'egut', 'Migut.D01672' => 'egut', 'Migut.N03098' => 'egut', 'MSTRG.22009' => 'ama', 'MSTRG.9601' => 'ama', 'MSTRG.9602' => 'ama', 'Nitab4.5_0000978g0050' => 'nta', 'Nitab4.5_0002881g0060' => 'nta', 'Nitab4.5_0002881g0120' => 'nta', 'Nitab4.5_0004511g0020' => 'nta', 'Nitab4.5_0004511g0090' => 'nta', 'Nitab4.5_0012375g0010' => 'nta', 'Nitab4.5_0020510g0010' => 'nta', 'Nn1g01396' => 'nnu', 'Nn1g01397' => 'nnu', 'Nn4g23350' => 'nnu', 'Nn4g23353' => 'nnu', 'Oeu002203.3' => 'oeu', 'Oeu002204.1' => 'oeu', 'Oeu002205.2' => 'oeu', 'Oeu032213.1' => 'oeu', 'Oeu032214.1' => 'oeu', 'Oeu032215.1' => 'oeu', 'Os06g0235300' => 'osa', 'Os07g0598300' => 'osa', 'Os07g0636200' => 'osa', 'Peaxi162Scf00201g00021' => 'pax', 'Peaxi162Scf00201g00024' => 'pax', 'Peaxi162Scf00323g00935' => 'pax', 'PGR004G0096' => 'pgr', 'PGR083G0537' => 'pgr', 'PGR083G1883' => 'pgr', 'PGSC0003DMG400006818' => 'stu', 'PGSC0003DMG400024553' => 'stu', 'PGSC0003DMG400024655' => 'stu', 'Phvul.003G123100' => 'pvu', 'Phvul.003G186700' => 'pvu', 'Phvul.009G190731' => 'pvu', 'Potri.010G003300' => 'ptr', 'Potri.012G066900' => 'ptr', 'Potri.012G067000' => 'ptr', 'Pp3c11_9170' => 'ppa', 'Pp3c16_16990' => 'ppa', 'Pp3c1_13300' => 'ppa', 'Pp3c1_13308' => 'ppa', 'Pp3c1_9760' => 'ppa', 'PRCOL_00000483' => 'pco', 'PRCOL_00003710' => 'pco', 'PRCOL_00003770' => 'pco', 'Prupe.1G103200' => 'ppe', 'Prupe.5G200300' => 'ppe', 'Prupe.5G200400' => 'ppe', 'Psat0s1206g0200' => 'psa', 'Psat2g071520' => 'psa', 'Psat2g071560' => 'psa', 'Psat4g048680' => 'psa', 'Psat4g170680' => 'psa', 'Psat5g198440' => 'psa', 'PSO017G4168' => 'pso', 'PSO017G4474' => 'pso', 'PSO170G0915' => 'pso', 'PSO445G0012' => 'pso', 'PSO478G4640' => 'pso', 'QL06p014511' => 'qlo', 'QL10p018629' => 'qlo', 'RcHm_v2.0_Chr4g0427901' => 'rch', 'RcHm_v2.0_Chr7g0182391' => 'rch', 'RcHm_v2.0_Chr7g0182421' => 'rch', 'Rhsim04G0249200' => 'rsi', 'Rhsim08G0149500' => 'rsi', 'Rhsim08G0149700' => 'rsi', 'Sabra10G0002600' => 'sbr', 'Sabra12G0048100' => 'sbr', 'Sabra12G0048200' => 'sbr', 'SalBow6G2708' => 'sbo', 'SalBow7G3498' => 'sbo', 'SalBow7G3861' => 'sbo', 'Sc12g0006560' => 'sci', 'Sc12g0006570' => 'sci', 'Sc25g0001840' => 'sci', 'Sed0002195' => 'sed', 'Sed0007966' => 'sed', 'Sed0027646' => 'sed', 'SEGI_05145' => 'sgi', 'SEGI_10628' => 'sgi', 'SEGI_25363' => 'sgi', 'SEGI_26199' => 'sgi', 'SEGI_29143' => 'sgi', 'SEGI_38041' => 'sgi', 'SGA_v2.0_scaffold322G48597' => 'sas', 'SGA_v2.0_scaffold3G01735' => 'sas', 'SGA_v2.0_scaffold65G22108' => 'sas', 'SHI26980' => 'shi', 'SHI26981' => 'shi', 'SMO117G0045' => 'smo', 'SMO358G0589' => 'smo', 'SMO364G0824' => 'smo', 'Solyc03g115510.3' => 'sly', 'Solyc03g115530.4' => 'sly', 'Solyc12g098860.2' => 'sly', 'Sopen03g034510' => 'spe', 'Sopen03g034520' => 'spe', 'Sopen12g033610' => 'spe', 'Sp1g35260' => 'spa', 'Sp6g35120' => 'spa', 'TAR362G1045' => 'tar', 'TAR371G0783' => 'tar', 'TAR371G1295' => 'tar', 'TAR376G0971' => 'tar', 'TAR629G0913' => 'tar', 'TAR629G3362' => 'tar', 'THA.LOC104802617' => 'tha', 'THA.LOC104818327' => 'tha', 'Thecc.03G096600' => 'tca', 'Thecc.03G096700' => 'tca', 'Thecc.05G189900' => 'tca', 'Thhalv10011287m.g' => 'esa', 'Thhalv10012481m.g' => 'esa', 'TPR.G12256' => 'tpr', 'TPR.G12547' => 'tpr', 'TPR.G2046' => 'tpr', 'TWI15G0866' => 'twi', 'TWI15G1152' => 'twi', 'TWI77G0300' => 'twi', 'unitig_0.g11' => 'ugi', 'unitig_0.g12' => 'ugi', 'unitig_37.g12720' => 'ugi', 'unitig_37.g12721' => 'ugi', 'unitig_37.g12722' => 'ugi', 'unitig_8.g3632' => 'ugi', 'vmacro08016' => 'vma', 'vmacro17583' => 'vma', 'vmacro17585' => 'vma', 'vmacro17586' => 'vma', 'VMungo1215G3312' => 'vmu', 'VMungo1215G3338' => 'vmu', 'VMungo1309G2646' => 'vmu', 'VMungo1309G2923' => 'vmu', 'Zm00001eb108430' => 'zma', 'Zm00001eb326710' => 'zma', 'Zm00001eb328680' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001674' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001674' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001674' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001674' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001674', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '386', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p03470' => 'bna', 'A05p21130' => 'bna', 'A08p04890' => 'bna', 'Aa31LG10G5460' => 'aar', 'Aa31LG3G18650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3709' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3354' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3356' => 'aag', 'Actinidia04849' => 'ach', 'Actinidia09199' => 'ach', 'Actinidia09202' => 'ach', 'Actinidia09203' => 'ach', 'Actinidia09209' => 'ach', 'Actinidia09210' => 'ach', 'Actinidia09211' => 'ach', 'Actinidia09242' => 'ach', 'Actinidia09243' => 'ach', 'Actinidia09244' => 'ach', 'Actinidia18515' => 'ach', 'Actinidia24557' => 'ach', 'Ah.02g113880' => 'amhyb', 'Ah.02g113890' => 'amhyb', 'Ah.07g203550' => 'amhyb', 'Ah.11g048050' => 'amhyb', 'AL1G54910' => 'aly', 'AL6G18150' => 'aly', 'Aqoxy2G02487' => 'aox', 'Aqoxy3G00452' => 'aox', 'Aqoxy3G00457' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H98Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1X400K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PX28T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46C2EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JZ0DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZM33J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE44IX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C00RGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6KQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3EHI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYPB85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJK2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJDX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3RYPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3732C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3GI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L93FEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSIV7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5C3PT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMN4BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QKVB7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8ERLJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RDG2VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UP3S85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6XLN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMQ9AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VY9WGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WH471K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJG2SM' => 'arhy', 'AT1G48310' => 'ath', 'AT5G07810' => 'ath', 'ATR0030G060' => 'atr', 'ATR0064G032' => 'atr', 'ATR0064G082' => 'atr', 'ATR0796G053' => 'atr', 'Atru.chr4.3178' => 'acertr', 'Atru.chr4.3179' => 'acertr', 'Atru.chr9.280' => 'acertr', 'Atru.chr9.282' => 'acertr', 'AUR62002539' => 'cqu', 'AUR62008488' => 'cqu', 'AUR62008489' => 'cqu', 'AUR62021607' => 'cqu', 'AUR62021608' => 'cqu', 'AUR62023654' => 'cqu', 'BcaB02g11412' => 'bca', 'BcaC05g27587' => 'bca', 'BolC3t12927H' => 'bol', 'BolC5t32283H' => 'bol', 'BraA03t09697Z' => 'bra', 'BraA05t21018Z' => 'bra', 'BraA08t32515Z' => 'bra', 'C03p03890' => 'bna', 'C05p35670' => 'bna', 'CAN.G479.33' => 'can', 'CAN.G479.34' => 'can', 'CAN.G484.96' => 'can', 'CANSAT78G0587' => 'cansat', 'CANSAT80G0757' => 'cansat', 'CANSAT80G0851' => 'cansat', 'CARHR037930' => 'chi', 'CARHR205370' => 'chi', 'Carub.0001s3744' => 'cru', 'Carub.0006s0673' => 'cru', 'Ca_13626_v3' => 'car', 'Ca_13629_v3' => 'car', 'Ca_13630_v3' => 'car', 'Ca_21367_v3' => 'car', 'Ca_21793_v3' => 'car', 'CBR_g23187' => 'cbr', 'CBR_g29672' => 'cbr', 'CBR_g49701' => 'cbr', 'CBR_g49703' => 'cbr', 'CBR_g49704' => 'cbr', 'Cc00_g02240' => 'ccan', 'Cc00_g02250' => 'ccan', 'Cc00_g14900' => 'ccan', 'Cc00_g14910' => 'ccan', 'Cc03_g00030' => 'ccan', 'CDE04G0389' => 'cde', 'CDE07G0117' => 'cde', 'CDE07G0655' => 'cde', 'CDE07G0766' => 'cde', 'CDE11G0774' => 'cde', 'Cfa015741' => 'cfa', 'Cfa019293' => 'cfa', 'Ciclev10004488m.g' => 'ccl', 'Ciclev10018469m.g' => 'ccl', 'Ciclev10018579m.g' => 'ccl', 'CiPaw.01G127900' => 'cil', 'CiPaw.11G049400' => 'cil', 'CiPaw.11G049500' => 'cil', 'CiPaw.11G049600' => 'cil', 'ClCG05G006880' => 'cla', 'ClCG06G015860' => 'cla', 'ClCG06G015870' => 'cla', 'COL.COLO4_28308' => 'col', 'COL.COLO4_36610' => 'col', 'COL.COLO4_36884' => 'col', 'COL.COLO4_36885' => 'col', 'Cpa.g.sc146.11' => 'cpa', 'Cpa.g.sc146.12' => 'cpa', 'Cpa.g.sc2632.1' => 'cpa', 'Cpa.g.sc94.1' => 'cpa', 'Cpa.g.sc94.3' => 'cpa', 'Cpa.g.sc94.4' => 'cpa', 'Cre05.g236950' => 'cre', 'Cre12.g494200' => 'cre', 'Cre16.g679400' => 'cre', 'CsaV3_1G002690' => 'csa', 'CsaV3_1G002700' => 'csa', 'CsaV3_3G015550' => 'csa', 'CSS0007026' => 'camsi', 'CSS0042912' => 'camsi', 'CSS0045245' => 'camsi', 'DCAR_026018' => 'dca', 'DCAR_026929' => 'dca', 'DCAR_026933' => 'dca', 'DCAR_026940' => 'dca', 'DCAR_031671' => 'dca', 'Dinv10682' => 'din', 'Dinv10683' => 'din', 'Dinv24721' => 'din', 'Dinv38776' => 'din', 'Dinv38777' => 'din', 'Dinv38778' => 'din', 'Duzib068G0733' => 'dzi', 'Duzib235G1161' => 'dzi', 'ECA246G1105' => 'eca', 'ECA247G0462' => 'eca', 'EL10Ac3g06234' => 'bvu', 'EL10Ac5g11090' => 'bvu', 'Eucgr.B00565' => 'egr', 'Eucgr.B00566' => 'egr', 'Eucgr.H04132' => 'egr', 'FAN08G0876' => 'fan', 'FAN12G1186' => 'fan', 'FAN13G3105' => 'fan', 'FAN17G2195' => 'fan', 'FAN18G2329' => 'fan', 'FvH4_4g21690' => 'fve', 'FvH4_5g14340' => 'fve', 'FvH4_5g14341' => 'fve', 'Glyma.05G023300' => 'gma', 'Glyma.06G199800' => 'gma', 'Glyma.13G118200' => 'gma', 'Glyma.17G041700' => 'gma', 'Glyma.17G076400' => 'gma', 'Gohir.A03G068966' => 'ghi', 'Gohir.A03G069032' => 'ghi', 'Gohir.A06G112800' => 'ghi', 'Gohir.A11G032900' => 'ghi', 'Gohir.D03G095500' => 'ghi', 'Gohir.D06G117500' => 'ghi', 'Gohir.D11G036200' => 'ghi', 'Gorai.003G100200' => 'gra', 'Gorai.007G039000' => 'gra', 'Gorai.010G135100' => 'gra', 'GSVIVG01007916001' => 'vvi', 'GSVIVG01007917001' => 'vvi', 'GSVIVG01017700001' => 'vvi', 'HanXRQChr04g0107361' => 'han', 'HanXRQChr04g0126851' => 'han', 'HanXRQChr05g0148951' => 'han', 'HanXRQChr14g0426861' => 'han', 'Haze_00754' => 'cav', 'Haze_00755' => 'cav', 'Haze_00775' => 'cav', 'Haze_07675' => 'cav', 'Haze_07676' => 'cav', 'Haze_08734' => 'cav', 'Hma1.2p1_0060F.1_g033350' => 'hma', 'Hma1.2p1_0322F.1_g124930' => 'hma', 'Hma1.2p1_1067F.1_g253855' => 'hma', 'Hma1.2p1_1449F.1_g284110' => 'hma', 'HPP92_013436' => 'vpl', 'HPP92_013437' => 'vpl', 'HPP92_020541' => 'vpl', 'Hund02613' => 'sun', 'Hund09848' => 'sun', 'Hund22642' => 'sun', 'Lalb_Chr13g0299021' => 'lal', 'Lalb_Chr13g0302981' => 'lal', 'Lalb_Chr22g0355251' => 'lal', 'Lj1g0003467' => 'lja', 'Lj3C842G5' => 'lonja', 'Lj4g0011824' => 'lja', 'Lj4g0019577' => 'lja', 'Lj5A106T69' => 'lonja', 'Lj5A106T70' => 'lonja', 'Lj9A469T58' => 'lonja', 'Lj9A469T59' => 'lonja', 'Lj9C469T4' => 'lonja', 'Lsat_1_v5_gn_1_13760' => 'lsa', 'Lsat_1_v5_gn_5_21720' => 'lsa', 'Lsat_1_v5_gn_6_118341' => 'lsa', 'Lsat_1_v5_gn_7_27961' => 'lsa', 'Manes.03G212800' => 'mes', 'Manes.06G087600' => 'mes', 'Manes.06G087800' => 'mes', 'Mapoly0058s0117' => 'mpo', 'MBI19_g30290_MAGBIO' => 'mbi', 'MCO15G104' => 'mco', 'MCO15G340' => 'mco', 'MD13G1156900' => 'mdo', 'MD14G1208200' => 'mdo', 'MD14G1208300' => 'mdo', 'MD14G1208500' => 'mdo', 'MD16G1134000' => 'mdo', 'Medtr4g109230' => 'mtr', 'Medtr4g124090' => 'mtr', 'MELO3C006754.2' => 'cme', 'MELO3C017204.2' => 'cme', 'MELO3C017205.2' => 'cme', 'Migut.C00071' => 'egut', 'Migut.D01671' => 'egut', 'Migut.D01672' => 'egut', 'Migut.N03098' => 'egut', 'MSTRG.22009' => 'ama', 'MSTRG.9601' => 'ama', 'MSTRG.9602' => 'ama', 'Nitab4.5_0000978g0050' => 'nta', 'Nitab4.5_0002881g0060' => 'nta', 'Nitab4.5_0002881g0120' => 'nta', 'Nitab4.5_0004511g0020' => 'nta', 'Nitab4.5_0004511g0090' => 'nta', 'Nitab4.5_0012375g0010' => 'nta', 'Nitab4.5_0020510g0010' => 'nta', 'Nn1g01396' => 'nnu', 'Nn1g01397' => 'nnu', 'Nn4g23350' => 'nnu', 'Nn4g23353' => 'nnu', 'Oeu002203.3' => 'oeu', 'Oeu002204.1' => 'oeu', 'Oeu002205.2' => 'oeu', 'Oeu032213.1' => 'oeu', 'Oeu032214.1' => 'oeu', 'Oeu032215.1' => 'oeu', 'Os06g0235300' => 'osa', 'Os07g0598300' => 'osa', 'Os07g0636200' => 'osa', 'Peaxi162Scf00201g00021' => 'pax', 'Peaxi162Scf00201g00024' => 'pax', 'Peaxi162Scf00323g00935' => 'pax', 'PGR004G0096' => 'pgr', 'PGR083G0537' => 'pgr', 'PGR083G1883' => 'pgr', 'PGSC0003DMG400006818' => 'stu', 'PGSC0003DMG400024553' => 'stu', 'PGSC0003DMG400024655' => 'stu', 'Phvul.003G123100' => 'pvu', 'Phvul.003G186700' => 'pvu', 'Phvul.009G190731' => 'pvu', 'Potri.010G003300' => 'ptr', 'Potri.012G066900' => 'ptr', 'Potri.012G067000' => 'ptr', 'Pp3c11_9170' => 'ppa', 'Pp3c16_16990' => 'ppa', 'Pp3c1_13300' => 'ppa', 'Pp3c1_13308' => 'ppa', 'Pp3c1_9760' => 'ppa', 'PRCOL_00000483' => 'pco', 'PRCOL_00003710' => 'pco', 'PRCOL_00003770' => 'pco', 'Prupe.1G103200' => 'ppe', 'Prupe.5G200300' => 'ppe', 'Prupe.5G200400' => 'ppe', 'Psat0s1206g0200' => 'psa', 'Psat2g071520' => 'psa', 'Psat2g071560' => 'psa', 'Psat4g048680' => 'psa', 'Psat4g170680' => 'psa', 'Psat5g198440' => 'psa', 'PSO017G4168' => 'pso', 'PSO017G4474' => 'pso', 'PSO170G0915' => 'pso', 'PSO445G0012' => 'pso', 'PSO478G4640' => 'pso', 'QL06p014511' => 'qlo', 'QL10p018629' => 'qlo', 'RcHm_v2.0_Chr4g0427901' => 'rch', 'RcHm_v2.0_Chr7g0182391' => 'rch', 'RcHm_v2.0_Chr7g0182421' => 'rch', 'Rhsim04G0249200' => 'rsi', 'Rhsim08G0149500' => 'rsi', 'Rhsim08G0149700' => 'rsi', 'Sabra10G0002600' => 'sbr', 'Sabra12G0048100' => 'sbr', 'Sabra12G0048200' => 'sbr', 'SalBow6G2708' => 'sbo', 'SalBow7G3498' => 'sbo', 'SalBow7G3861' => 'sbo', 'Sc12g0006560' => 'sci', 'Sc12g0006570' => 'sci', 'Sc25g0001840' => 'sci', 'Sed0002195' => 'sed', 'Sed0007966' => 'sed', 'Sed0027646' => 'sed', 'SEGI_05145' => 'sgi', 'SEGI_10628' => 'sgi', 'SEGI_25363' => 'sgi', 'SEGI_26199' => 'sgi', 'SEGI_29143' => 'sgi', 'SEGI_38041' => 'sgi', 'SGA_v2.0_scaffold322G48597' => 'sas', 'SGA_v2.0_scaffold3G01735' => 'sas', 'SGA_v2.0_scaffold65G22108' => 'sas', 'SHI26980' => 'shi', 'SHI26981' => 'shi', 'SMO117G0045' => 'smo', 'SMO358G0589' => 'smo', 'SMO364G0824' => 'smo', 'Solyc03g115510.3' => 'sly', 'Solyc03g115530.4' => 'sly', 'Solyc12g098860.2' => 'sly', 'Sopen03g034510' => 'spe', 'Sopen03g034520' => 'spe', 'Sopen12g033610' => 'spe', 'Sp1g35260' => 'spa', 'Sp6g35120' => 'spa', 'TAR362G1045' => 'tar', 'TAR371G0783' => 'tar', 'TAR371G1295' => 'tar', 'TAR376G0971' => 'tar', 'TAR629G0913' => 'tar', 'TAR629G3362' => 'tar', 'THA.LOC104802617' => 'tha', 'THA.LOC104818327' => 'tha', 'Thecc.03G096600' => 'tca', 'Thecc.03G096700' => 'tca', 'Thecc.05G189900' => 'tca', 'Thhalv10011287m.g' => 'esa', 'Thhalv10012481m.g' => 'esa', 'TPR.G12256' => 'tpr', 'TPR.G12547' => 'tpr', 'TPR.G2046' => 'tpr', 'TWI15G0866' => 'twi', 'TWI15G1152' => 'twi', 'TWI77G0300' => 'twi', 'unitig_0.g11' => 'ugi', 'unitig_0.g12' => 'ugi', 'unitig_37.g12720' => 'ugi', 'unitig_37.g12721' => 'ugi', 'unitig_37.g12722' => 'ugi', 'unitig_8.g3632' => 'ugi', 'vmacro08016' => 'vma', 'vmacro17583' => 'vma', 'vmacro17585' => 'vma', 'vmacro17586' => 'vma', 'VMungo1215G3312' => 'vmu', 'VMungo1215G3338' => 'vmu', 'VMungo1309G2646' => 'vmu', 'VMungo1309G2923' => 'vmu', 'Zm00001eb108430' => 'zma', 'Zm00001eb326710' => 'zma', 'Zm00001eb328680' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001674', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001674' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001674', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '386', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001674' ) ), 'genes' => array( 'A03p03470' => 'bna', 'A05p21130' => 'bna', 'A08p04890' => 'bna', 'Aa31LG10G5460' => 'aar', 'Aa31LG3G18650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3709' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3354' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3356' => 'aag', 'Actinidia04849' => 'ach', 'Actinidia09199' => 'ach', 'Actinidia09202' => 'ach', 'Actinidia09203' => 'ach', 'Actinidia09209' => 'ach', 'Actinidia09210' => 'ach', 'Actinidia09211' => 'ach', 'Actinidia09242' => 'ach', 'Actinidia09243' => 'ach', 'Actinidia09244' => 'ach', 'Actinidia18515' => 'ach', 'Actinidia24557' => 'ach', 'Ah.02g113880' => 'amhyb', 'Ah.02g113890' => 'amhyb', 'Ah.07g203550' => 'amhyb', 'Ah.11g048050' => 'amhyb', 'AL1G54910' => 'aly', 'AL6G18150' => 'aly', 'Aqoxy2G02487' => 'aox', 'Aqoxy3G00452' => 'aox', 'Aqoxy3G00457' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H98Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1X400K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PX28T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46C2EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JZ0DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZM33J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE44IX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C00RGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6KQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3EHI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYPB85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJK2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJDX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3RYPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3732C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3GI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L93FEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSIV7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5C3PT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMN4BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QKVB7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8ERLJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RDG2VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UP3S85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6XLN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMQ9AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VY9WGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WH471K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJG2SM' => 'arhy', 'AT1G48310' => 'ath', 'AT5G07810' => 'ath', 'ATR0030G060' => 'atr', 'ATR0064G032' => 'atr', 'ATR0064G082' => 'atr', 'ATR0796G053' => 'atr', 'Atru.chr4.3178' => 'acertr', 'Atru.chr4.3179' => 'acertr', 'Atru.chr9.280' => 'acertr', 'Atru.chr9.282' => 'acertr', 'AUR62002539' => 'cqu', 'AUR62008488' => 'cqu', 'AUR62008489' => 'cqu', 'AUR62021607' => 'cqu', 'AUR62021608' => 'cqu', 'AUR62023654' => 'cqu', 'BcaB02g11412' => 'bca', 'BcaC05g27587' => 'bca', 'BolC3t12927H' => 'bol', 'BolC5t32283H' => 'bol', 'BraA03t09697Z' => 'bra', 'BraA05t21018Z' => 'bra', 'BraA08t32515Z' => 'bra', 'C03p03890' => 'bna', 'C05p35670' => 'bna', 'CAN.G479.33' => 'can', 'CAN.G479.34' => 'can', 'CAN.G484.96' => 'can', 'CANSAT78G0587' => 'cansat', 'CANSAT80G0757' => 'cansat', 'CANSAT80G0851' => 'cansat', 'CARHR037930' => 'chi', 'CARHR205370' => 'chi', 'Carub.0001s3744' => 'cru', 'Carub.0006s0673' => 'cru', 'Ca_13626_v3' => 'car', 'Ca_13629_v3' => 'car', 'Ca_13630_v3' => 'car', 'Ca_21367_v3' => 'car', 'Ca_21793_v3' => 'car', 'CBR_g23187' => 'cbr', 'CBR_g29672' => 'cbr', 'CBR_g49701' => 'cbr', 'CBR_g49703' => 'cbr', 'CBR_g49704' => 'cbr', 'Cc00_g02240' => 'ccan', 'Cc00_g02250' => 'ccan', 'Cc00_g14900' => 'ccan', 'Cc00_g14910' => 'ccan', 'Cc03_g00030' => 'ccan', 'CDE04G0389' => 'cde', 'CDE07G0117' => 'cde', 'CDE07G0655' => 'cde', 'CDE07G0766' => 'cde', 'CDE11G0774' => 'cde', 'Cfa015741' => 'cfa', 'Cfa019293' => 'cfa', 'Ciclev10004488m.g' => 'ccl', 'Ciclev10018469m.g' => 'ccl', 'Ciclev10018579m.g' => 'ccl', 'CiPaw.01G127900' => 'cil', 'CiPaw.11G049400' => 'cil', 'CiPaw.11G049500' => 'cil', 'CiPaw.11G049600' => 'cil', 'ClCG05G006880' => 'cla', 'ClCG06G015860' => 'cla', 'ClCG06G015870' => 'cla', 'COL.COLO4_28308' => 'col', 'COL.COLO4_36610' => 'col', 'COL.COLO4_36884' => 'col', 'COL.COLO4_36885' => 'col', 'Cpa.g.sc146.11' => 'cpa', 'Cpa.g.sc146.12' => 'cpa', 'Cpa.g.sc2632.1' => 'cpa', 'Cpa.g.sc94.1' => 'cpa', 'Cpa.g.sc94.3' => 'cpa', 'Cpa.g.sc94.4' => 'cpa', 'Cre05.g236950' => 'cre', 'Cre12.g494200' => 'cre', 'Cre16.g679400' => 'cre', 'CsaV3_1G002690' => 'csa', 'CsaV3_1G002700' => 'csa', 'CsaV3_3G015550' => 'csa', 'CSS0007026' => 'camsi', 'CSS0042912' => 'camsi', 'CSS0045245' => 'camsi', 'DCAR_026018' => 'dca', 'DCAR_026929' => 'dca', 'DCAR_026933' => 'dca', 'DCAR_026940' => 'dca', 'DCAR_031671' => 'dca', 'Dinv10682' => 'din', 'Dinv10683' => 'din', 'Dinv24721' => 'din', 'Dinv38776' => 'din', 'Dinv38777' => 'din', 'Dinv38778' => 'din', 'Duzib068G0733' => 'dzi', 'Duzib235G1161' => 'dzi', 'ECA246G1105' => 'eca', 'ECA247G0462' => 'eca', 'EL10Ac3g06234' => 'bvu', 'EL10Ac5g11090' => 'bvu', 'Eucgr.B00565' => 'egr', 'Eucgr.B00566' => 'egr', 'Eucgr.H04132' => 'egr', 'FAN08G0876' => 'fan', 'FAN12G1186' => 'fan', 'FAN13G3105' => 'fan', 'FAN17G2195' => 'fan', 'FAN18G2329' => 'fan', 'FvH4_4g21690' => 'fve', 'FvH4_5g14340' => 'fve', 'FvH4_5g14341' => 'fve', 'Glyma.05G023300' => 'gma', 'Glyma.06G199800' => 'gma', 'Glyma.13G118200' => 'gma', 'Glyma.17G041700' => 'gma', 'Glyma.17G076400' => 'gma', 'Gohir.A03G068966' => 'ghi', 'Gohir.A03G069032' => 'ghi', 'Gohir.A06G112800' => 'ghi', 'Gohir.A11G032900' => 'ghi', 'Gohir.D03G095500' => 'ghi', 'Gohir.D06G117500' => 'ghi', 'Gohir.D11G036200' => 'ghi', 'Gorai.003G100200' => 'gra', 'Gorai.007G039000' => 'gra', 'Gorai.010G135100' => 'gra', 'GSVIVG01007916001' => 'vvi', 'GSVIVG01007917001' => 'vvi', 'GSVIVG01017700001' => 'vvi', 'HanXRQChr04g0107361' => 'han', 'HanXRQChr04g0126851' => 'han', 'HanXRQChr05g0148951' => 'han', 'HanXRQChr14g0426861' => 'han', 'Haze_00754' => 'cav', 'Haze_00755' => 'cav', 'Haze_00775' => 'cav', 'Haze_07675' => 'cav', 'Haze_07676' => 'cav', 'Haze_08734' => 'cav', 'Hma1.2p1_0060F.1_g033350' => 'hma', 'Hma1.2p1_0322F.1_g124930' => 'hma', 'Hma1.2p1_1067F.1_g253855' => 'hma', 'Hma1.2p1_1449F.1_g284110' => 'hma', 'HPP92_013436' => 'vpl', 'HPP92_013437' => 'vpl', 'HPP92_020541' => 'vpl', 'Hund02613' => 'sun', 'Hund09848' => 'sun', 'Hund22642' => 'sun', 'Lalb_Chr13g0299021' => 'lal', 'Lalb_Chr13g0302981' => 'lal', 'Lalb_Chr22g0355251' => 'lal', 'Lj1g0003467' => 'lja', 'Lj3C842G5' => 'lonja', 'Lj4g0011824' => 'lja', 'Lj4g0019577' => 'lja', 'Lj5A106T69' => 'lonja', 'Lj5A106T70' => 'lonja', 'Lj9A469T58' => 'lonja', 'Lj9A469T59' => 'lonja', 'Lj9C469T4' => 'lonja', 'Lsat_1_v5_gn_1_13760' => 'lsa', 'Lsat_1_v5_gn_5_21720' => 'lsa', 'Lsat_1_v5_gn_6_118341' => 'lsa', 'Lsat_1_v5_gn_7_27961' => 'lsa', 'Manes.03G212800' => 'mes', 'Manes.06G087600' => 'mes', 'Manes.06G087800' => 'mes', 'Mapoly0058s0117' => 'mpo', 'MBI19_g30290_MAGBIO' => 'mbi', 'MCO15G104' => 'mco', 'MCO15G340' => 'mco', 'MD13G1156900' => 'mdo', 'MD14G1208200' => 'mdo', 'MD14G1208300' => 'mdo', 'MD14G1208500' => 'mdo', 'MD16G1134000' => 'mdo', 'Medtr4g109230' => 'mtr', 'Medtr4g124090' => 'mtr', 'MELO3C006754.2' => 'cme', 'MELO3C017204.2' => 'cme', 'MELO3C017205.2' => 'cme', 'Migut.C00071' => 'egut', 'Migut.D01671' => 'egut', 'Migut.D01672' => 'egut', 'Migut.N03098' => 'egut', 'MSTRG.22009' => 'ama', 'MSTRG.9601' => 'ama', 'MSTRG.9602' => 'ama', 'Nitab4.5_0000978g0050' => 'nta', 'Nitab4.5_0002881g0060' => 'nta', 'Nitab4.5_0002881g0120' => 'nta', 'Nitab4.5_0004511g0020' => 'nta', 'Nitab4.5_0004511g0090' => 'nta', 'Nitab4.5_0012375g0010' => 'nta', 'Nitab4.5_0020510g0010' => 'nta', 'Nn1g01396' => 'nnu', 'Nn1g01397' => 'nnu', 'Nn4g23350' => 'nnu', 'Nn4g23353' => 'nnu', 'Oeu002203.3' => 'oeu', 'Oeu002204.1' => 'oeu', 'Oeu002205.2' => 'oeu', 'Oeu032213.1' => 'oeu', 'Oeu032214.1' => 'oeu', 'Oeu032215.1' => 'oeu', 'Os06g0235300' => 'osa', 'Os07g0598300' => 'osa', 'Os07g0636200' => 'osa', 'Peaxi162Scf00201g00021' => 'pax', 'Peaxi162Scf00201g00024' => 'pax', 'Peaxi162Scf00323g00935' => 'pax', 'PGR004G0096' => 'pgr', 'PGR083G0537' => 'pgr', 'PGR083G1883' => 'pgr', 'PGSC0003DMG400006818' => 'stu', 'PGSC0003DMG400024553' => 'stu', 'PGSC0003DMG400024655' => 'stu', 'Phvul.003G123100' => 'pvu', 'Phvul.003G186700' => 'pvu', 'Phvul.009G190731' => 'pvu', 'Potri.010G003300' => 'ptr', 'Potri.012G066900' => 'ptr', 'Potri.012G067000' => 'ptr', 'Pp3c11_9170' => 'ppa', 'Pp3c16_16990' => 'ppa', 'Pp3c1_13300' => 'ppa', 'Pp3c1_13308' => 'ppa', 'Pp3c1_9760' => 'ppa', 'PRCOL_00000483' => 'pco', 'PRCOL_00003710' => 'pco', 'PRCOL_00003770' => 'pco', 'Prupe.1G103200' => 'ppe', 'Prupe.5G200300' => 'ppe', 'Prupe.5G200400' => 'ppe', 'Psat0s1206g0200' => 'psa', 'Psat2g071520' => 'psa', 'Psat2g071560' => 'psa', 'Psat4g048680' => 'psa', 'Psat4g170680' => 'psa', 'Psat5g198440' => 'psa', 'PSO017G4168' => 'pso', 'PSO017G4474' => 'pso', 'PSO170G0915' => 'pso', 'PSO445G0012' => 'pso', 'PSO478G4640' => 'pso', 'QL06p014511' => 'qlo', 'QL10p018629' => 'qlo', 'RcHm_v2.0_Chr4g0427901' => 'rch', 'RcHm_v2.0_Chr7g0182391' => 'rch', 'RcHm_v2.0_Chr7g0182421' => 'rch', 'Rhsim04G0249200' => 'rsi', 'Rhsim08G0149500' => 'rsi', 'Rhsim08G0149700' => 'rsi', 'Sabra10G0002600' => 'sbr', 'Sabra12G0048100' => 'sbr', 'Sabra12G0048200' => 'sbr', 'SalBow6G2708' => 'sbo', 'SalBow7G3498' => 'sbo', 'SalBow7G3861' => 'sbo', 'Sc12g0006560' => 'sci', 'Sc12g0006570' => 'sci', 'Sc25g0001840' => 'sci', 'Sed0002195' => 'sed', 'Sed0007966' => 'sed', 'Sed0027646' => 'sed', 'SEGI_05145' => 'sgi', 'SEGI_10628' => 'sgi', 'SEGI_25363' => 'sgi', 'SEGI_26199' => 'sgi', 'SEGI_29143' => 'sgi', 'SEGI_38041' => 'sgi', 'SGA_v2.0_scaffold322G48597' => 'sas', 'SGA_v2.0_scaffold3G01735' => 'sas', 'SGA_v2.0_scaffold65G22108' => 'sas', 'SHI26980' => 'shi', 'SHI26981' => 'shi', 'SMO117G0045' => 'smo', 'SMO358G0589' => 'smo', 'SMO364G0824' => 'smo', 'Solyc03g115510.3' => 'sly', 'Solyc03g115530.4' => 'sly', 'Solyc12g098860.2' => 'sly', 'Sopen03g034510' => 'spe', 'Sopen03g034520' => 'spe', 'Sopen12g033610' => 'spe', 'Sp1g35260' => 'spa', 'Sp6g35120' => 'spa', 'TAR362G1045' => 'tar', 'TAR371G0783' => 'tar', 'TAR371G1295' => 'tar', 'TAR376G0971' => 'tar', 'TAR629G0913' => 'tar', 'TAR629G3362' => 'tar', 'THA.LOC104802617' => 'tha', 'THA.LOC104818327' => 'tha', 'Thecc.03G096600' => 'tca', 'Thecc.03G096700' => 'tca', 'Thecc.05G189900' => 'tca', 'Thhalv10011287m.g' => 'esa', 'Thhalv10012481m.g' => 'esa', 'TPR.G12256' => 'tpr', 'TPR.G12547' => 'tpr', 'TPR.G2046' => 'tpr', 'TWI15G0866' => 'twi', 'TWI15G1152' => 'twi', 'TWI77G0300' => 'twi', 'unitig_0.g11' => 'ugi', 'unitig_0.g12' => 'ugi', 'unitig_37.g12720' => 'ugi', 'unitig_37.g12721' => 'ugi', 'unitig_37.g12722' => 'ugi', 'unitig_8.g3632' => 'ugi', 'vmacro08016' => 'vma', 'vmacro17583' => 'vma', 'vmacro17585' => 'vma', 'vmacro17586' => 'vma', 'VMungo1215G3312' => 'vmu', 'VMungo1215G3338' => 'vmu', 'VMungo1309G2646' => 'vmu', 'VMungo1309G2923' => 'vmu', 'Zm00001eb108430' => 'zma', 'Zm00001eb326710' => 'zma', 'Zm00001eb328680' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001674' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001674' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001674' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001674' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001674', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '386', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p03470' => 'bna', 'A05p21130' => 'bna', 'A08p04890' => 'bna', 'Aa31LG10G5460' => 'aar', 'Aa31LG3G18650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3709' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3354' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3356' => 'aag', 'Actinidia04849' => 'ach', 'Actinidia09199' => 'ach', 'Actinidia09202' => 'ach', 'Actinidia09203' => 'ach', 'Actinidia09209' => 'ach', 'Actinidia09210' => 'ach', 'Actinidia09211' => 'ach', 'Actinidia09242' => 'ach', 'Actinidia09243' => 'ach', 'Actinidia09244' => 'ach', 'Actinidia18515' => 'ach', 'Actinidia24557' => 'ach', 'Ah.02g113880' => 'amhyb', 'Ah.02g113890' => 'amhyb', 'Ah.07g203550' => 'amhyb', 'Ah.11g048050' => 'amhyb', 'AL1G54910' => 'aly', 'AL6G18150' => 'aly', 'Aqoxy2G02487' => 'aox', 'Aqoxy3G00452' => 'aox', 'Aqoxy3G00457' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H98Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1X400K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PX28T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46C2EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JZ0DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZM33J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE44IX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C00RGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6KQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3EHI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYPB85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJK2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJDX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3RYPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3732C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3GI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L93FEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSIV7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5C3PT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMN4BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QKVB7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8ERLJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RDG2VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UP3S85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6XLN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMQ9AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VY9WGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WH471K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJG2SM' => 'arhy', 'AT1G48310' => 'ath', 'AT5G07810' => 'ath', 'ATR0030G060' => 'atr', 'ATR0064G032' => 'atr', 'ATR0064G082' => 'atr', 'ATR0796G053' => 'atr', 'Atru.chr4.3178' => 'acertr', 'Atru.chr4.3179' => 'acertr', 'Atru.chr9.280' => 'acertr', 'Atru.chr9.282' => 'acertr', 'AUR62002539' => 'cqu', 'AUR62008488' => 'cqu', 'AUR62008489' => 'cqu', 'AUR62021607' => 'cqu', 'AUR62021608' => 'cqu', 'AUR62023654' => 'cqu', 'BcaB02g11412' => 'bca', 'BcaC05g27587' => 'bca', 'BolC3t12927H' => 'bol', 'BolC5t32283H' => 'bol', 'BraA03t09697Z' => 'bra', 'BraA05t21018Z' => 'bra', 'BraA08t32515Z' => 'bra', 'C03p03890' => 'bna', 'C05p35670' => 'bna', 'CAN.G479.33' => 'can', 'CAN.G479.34' => 'can', 'CAN.G484.96' => 'can', 'CANSAT78G0587' => 'cansat', 'CANSAT80G0757' => 'cansat', 'CANSAT80G0851' => 'cansat', 'CARHR037930' => 'chi', 'CARHR205370' => 'chi', 'Carub.0001s3744' => 'cru', 'Carub.0006s0673' => 'cru', 'Ca_13626_v3' => 'car', 'Ca_13629_v3' => 'car', 'Ca_13630_v3' => 'car', 'Ca_21367_v3' => 'car', 'Ca_21793_v3' => 'car', 'CBR_g23187' => 'cbr', 'CBR_g29672' => 'cbr', 'CBR_g49701' => 'cbr', 'CBR_g49703' => 'cbr', 'CBR_g49704' => 'cbr', 'Cc00_g02240' => 'ccan', 'Cc00_g02250' => 'ccan', 'Cc00_g14900' => 'ccan', 'Cc00_g14910' => 'ccan', 'Cc03_g00030' => 'ccan', 'CDE04G0389' => 'cde', 'CDE07G0117' => 'cde', 'CDE07G0655' => 'cde', 'CDE07G0766' => 'cde', 'CDE11G0774' => 'cde', 'Cfa015741' => 'cfa', 'Cfa019293' => 'cfa', 'Ciclev10004488m.g' => 'ccl', 'Ciclev10018469m.g' => 'ccl', 'Ciclev10018579m.g' => 'ccl', 'CiPaw.01G127900' => 'cil', 'CiPaw.11G049400' => 'cil', 'CiPaw.11G049500' => 'cil', 'CiPaw.11G049600' => 'cil', 'ClCG05G006880' => 'cla', 'ClCG06G015860' => 'cla', 'ClCG06G015870' => 'cla', 'COL.COLO4_28308' => 'col', 'COL.COLO4_36610' => 'col', 'COL.COLO4_36884' => 'col', 'COL.COLO4_36885' => 'col', 'Cpa.g.sc146.11' => 'cpa', 'Cpa.g.sc146.12' => 'cpa', 'Cpa.g.sc2632.1' => 'cpa', 'Cpa.g.sc94.1' => 'cpa', 'Cpa.g.sc94.3' => 'cpa', 'Cpa.g.sc94.4' => 'cpa', 'Cre05.g236950' => 'cre', 'Cre12.g494200' => 'cre', 'Cre16.g679400' => 'cre', 'CsaV3_1G002690' => 'csa', 'CsaV3_1G002700' => 'csa', 'CsaV3_3G015550' => 'csa', 'CSS0007026' => 'camsi', 'CSS0042912' => 'camsi', 'CSS0045245' => 'camsi', 'DCAR_026018' => 'dca', 'DCAR_026929' => 'dca', 'DCAR_026933' => 'dca', 'DCAR_026940' => 'dca', 'DCAR_031671' => 'dca', 'Dinv10682' => 'din', 'Dinv10683' => 'din', 'Dinv24721' => 'din', 'Dinv38776' => 'din', 'Dinv38777' => 'din', 'Dinv38778' => 'din', 'Duzib068G0733' => 'dzi', 'Duzib235G1161' => 'dzi', 'ECA246G1105' => 'eca', 'ECA247G0462' => 'eca', 'EL10Ac3g06234' => 'bvu', 'EL10Ac5g11090' => 'bvu', 'Eucgr.B00565' => 'egr', 'Eucgr.B00566' => 'egr', 'Eucgr.H04132' => 'egr', 'FAN08G0876' => 'fan', 'FAN12G1186' => 'fan', 'FAN13G3105' => 'fan', 'FAN17G2195' => 'fan', 'FAN18G2329' => 'fan', 'FvH4_4g21690' => 'fve', 'FvH4_5g14340' => 'fve', 'FvH4_5g14341' => 'fve', 'Glyma.05G023300' => 'gma', 'Glyma.06G199800' => 'gma', 'Glyma.13G118200' => 'gma', 'Glyma.17G041700' => 'gma', 'Glyma.17G076400' => 'gma', 'Gohir.A03G068966' => 'ghi', 'Gohir.A03G069032' => 'ghi', 'Gohir.A06G112800' => 'ghi', 'Gohir.A11G032900' => 'ghi', 'Gohir.D03G095500' => 'ghi', 'Gohir.D06G117500' => 'ghi', 'Gohir.D11G036200' => 'ghi', 'Gorai.003G100200' => 'gra', 'Gorai.007G039000' => 'gra', 'Gorai.010G135100' => 'gra', 'GSVIVG01007916001' => 'vvi', 'GSVIVG01007917001' => 'vvi', 'GSVIVG01017700001' => 'vvi', 'HanXRQChr04g0107361' => 'han', 'HanXRQChr04g0126851' => 'han', 'HanXRQChr05g0148951' => 'han', 'HanXRQChr14g0426861' => 'han', 'Haze_00754' => 'cav', 'Haze_00755' => 'cav', 'Haze_00775' => 'cav', 'Haze_07675' => 'cav', 'Haze_07676' => 'cav', 'Haze_08734' => 'cav', 'Hma1.2p1_0060F.1_g033350' => 'hma', 'Hma1.2p1_0322F.1_g124930' => 'hma', 'Hma1.2p1_1067F.1_g253855' => 'hma', 'Hma1.2p1_1449F.1_g284110' => 'hma', 'HPP92_013436' => 'vpl', 'HPP92_013437' => 'vpl', 'HPP92_020541' => 'vpl', 'Hund02613' => 'sun', 'Hund09848' => 'sun', 'Hund22642' => 'sun', 'Lalb_Chr13g0299021' => 'lal', 'Lalb_Chr13g0302981' => 'lal', 'Lalb_Chr22g0355251' => 'lal', 'Lj1g0003467' => 'lja', 'Lj3C842G5' => 'lonja', 'Lj4g0011824' => 'lja', 'Lj4g0019577' => 'lja', 'Lj5A106T69' => 'lonja', 'Lj5A106T70' => 'lonja', 'Lj9A469T58' => 'lonja', 'Lj9A469T59' => 'lonja', 'Lj9C469T4' => 'lonja', 'Lsat_1_v5_gn_1_13760' => 'lsa', 'Lsat_1_v5_gn_5_21720' => 'lsa', 'Lsat_1_v5_gn_6_118341' => 'lsa', 'Lsat_1_v5_gn_7_27961' => 'lsa', 'Manes.03G212800' => 'mes', 'Manes.06G087600' => 'mes', 'Manes.06G087800' => 'mes', 'Mapoly0058s0117' => 'mpo', 'MBI19_g30290_MAGBIO' => 'mbi', 'MCO15G104' => 'mco', 'MCO15G340' => 'mco', 'MD13G1156900' => 'mdo', 'MD14G1208200' => 'mdo', 'MD14G1208300' => 'mdo', 'MD14G1208500' => 'mdo', 'MD16G1134000' => 'mdo', 'Medtr4g109230' => 'mtr', 'Medtr4g124090' => 'mtr', 'MELO3C006754.2' => 'cme', 'MELO3C017204.2' => 'cme', 'MELO3C017205.2' => 'cme', 'Migut.C00071' => 'egut', 'Migut.D01671' => 'egut', 'Migut.D01672' => 'egut', 'Migut.N03098' => 'egut', 'MSTRG.22009' => 'ama', 'MSTRG.9601' => 'ama', 'MSTRG.9602' => 'ama', 'Nitab4.5_0000978g0050' => 'nta', 'Nitab4.5_0002881g0060' => 'nta', 'Nitab4.5_0002881g0120' => 'nta', 'Nitab4.5_0004511g0020' => 'nta', 'Nitab4.5_0004511g0090' => 'nta', 'Nitab4.5_0012375g0010' => 'nta', 'Nitab4.5_0020510g0010' => 'nta', 'Nn1g01396' => 'nnu', 'Nn1g01397' => 'nnu', 'Nn4g23350' => 'nnu', 'Nn4g23353' => 'nnu', 'Oeu002203.3' => 'oeu', 'Oeu002204.1' => 'oeu', 'Oeu002205.2' => 'oeu', 'Oeu032213.1' => 'oeu', 'Oeu032214.1' => 'oeu', 'Oeu032215.1' => 'oeu', 'Os06g0235300' => 'osa', 'Os07g0598300' => 'osa', 'Os07g0636200' => 'osa', 'Peaxi162Scf00201g00021' => 'pax', 'Peaxi162Scf00201g00024' => 'pax', 'Peaxi162Scf00323g00935' => 'pax', 'PGR004G0096' => 'pgr', 'PGR083G0537' => 'pgr', 'PGR083G1883' => 'pgr', 'PGSC0003DMG400006818' => 'stu', 'PGSC0003DMG400024553' => 'stu', 'PGSC0003DMG400024655' => 'stu', 'Phvul.003G123100' => 'pvu', 'Phvul.003G186700' => 'pvu', 'Phvul.009G190731' => 'pvu', 'Potri.010G003300' => 'ptr', 'Potri.012G066900' => 'ptr', 'Potri.012G067000' => 'ptr', 'Pp3c11_9170' => 'ppa', 'Pp3c16_16990' => 'ppa', 'Pp3c1_13300' => 'ppa', 'Pp3c1_13308' => 'ppa', 'Pp3c1_9760' => 'ppa', 'PRCOL_00000483' => 'pco', 'PRCOL_00003710' => 'pco', 'PRCOL_00003770' => 'pco', 'Prupe.1G103200' => 'ppe', 'Prupe.5G200300' => 'ppe', 'Prupe.5G200400' => 'ppe', 'Psat0s1206g0200' => 'psa', 'Psat2g071520' => 'psa', 'Psat2g071560' => 'psa', 'Psat4g048680' => 'psa', 'Psat4g170680' => 'psa', 'Psat5g198440' => 'psa', 'PSO017G4168' => 'pso', 'PSO017G4474' => 'pso', 'PSO170G0915' => 'pso', 'PSO445G0012' => 'pso', 'PSO478G4640' => 'pso', 'QL06p014511' => 'qlo', 'QL10p018629' => 'qlo', 'RcHm_v2.0_Chr4g0427901' => 'rch', 'RcHm_v2.0_Chr7g0182391' => 'rch', 'RcHm_v2.0_Chr7g0182421' => 'rch', 'Rhsim04G0249200' => 'rsi', 'Rhsim08G0149500' => 'rsi', 'Rhsim08G0149700' => 'rsi', 'Sabra10G0002600' => 'sbr', 'Sabra12G0048100' => 'sbr', 'Sabra12G0048200' => 'sbr', 'SalBow6G2708' => 'sbo', 'SalBow7G3498' => 'sbo', 'SalBow7G3861' => 'sbo', 'Sc12g0006560' => 'sci', 'Sc12g0006570' => 'sci', 'Sc25g0001840' => 'sci', 'Sed0002195' => 'sed', 'Sed0007966' => 'sed', 'Sed0027646' => 'sed', 'SEGI_05145' => 'sgi', 'SEGI_10628' => 'sgi', 'SEGI_25363' => 'sgi', 'SEGI_26199' => 'sgi', 'SEGI_29143' => 'sgi', 'SEGI_38041' => 'sgi', 'SGA_v2.0_scaffold322G48597' => 'sas', 'SGA_v2.0_scaffold3G01735' => 'sas', 'SGA_v2.0_scaffold65G22108' => 'sas', 'SHI26980' => 'shi', 'SHI26981' => 'shi', 'SMO117G0045' => 'smo', 'SMO358G0589' => 'smo', 'SMO364G0824' => 'smo', 'Solyc03g115510.3' => 'sly', 'Solyc03g115530.4' => 'sly', 'Solyc12g098860.2' => 'sly', 'Sopen03g034510' => 'spe', 'Sopen03g034520' => 'spe', 'Sopen12g033610' => 'spe', 'Sp1g35260' => 'spa', 'Sp6g35120' => 'spa', 'TAR362G1045' => 'tar', 'TAR371G0783' => 'tar', 'TAR371G1295' => 'tar', 'TAR376G0971' => 'tar', 'TAR629G0913' => 'tar', 'TAR629G3362' => 'tar', 'THA.LOC104802617' => 'tha', 'THA.LOC104818327' => 'tha', 'Thecc.03G096600' => 'tca', 'Thecc.03G096700' => 'tca', 'Thecc.05G189900' => 'tca', 'Thhalv10011287m.g' => 'esa', 'Thhalv10012481m.g' => 'esa', 'TPR.G12256' => 'tpr', 'TPR.G12547' => 'tpr', 'TPR.G2046' => 'tpr', 'TWI15G0866' => 'twi', 'TWI15G1152' => 'twi', 'TWI77G0300' => 'twi', 'unitig_0.g11' => 'ugi', 'unitig_0.g12' => 'ugi', 'unitig_37.g12720' => 'ugi', 'unitig_37.g12721' => 'ugi', 'unitig_37.g12722' => 'ugi', 'unitig_8.g3632' => 'ugi', 'vmacro08016' => 'vma', 'vmacro17583' => 'vma', 'vmacro17585' => 'vma', 'vmacro17586' => 'vma', 'VMungo1215G3312' => 'vmu', 'VMungo1215G3338' => 'vmu', 'VMungo1309G2646' => 'vmu', 'VMungo1309G2923' => 'vmu', 'Zm00001eb108430' => 'zma', 'Zm00001eb326710' => 'zma', 'Zm00001eb328680' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001674', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001674' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001674', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '386', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001674' ) ), 'genes' => array( 'A03p03470' => 'bna', 'A05p21130' => 'bna', 'A08p04890' => 'bna', 'Aa31LG10G5460' => 'aar', 'Aa31LG3G18650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3709' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3354' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3356' => 'aag', 'Actinidia04849' => 'ach', 'Actinidia09199' => 'ach', 'Actinidia09202' => 'ach', 'Actinidia09203' => 'ach', 'Actinidia09209' => 'ach', 'Actinidia09210' => 'ach', 'Actinidia09211' => 'ach', 'Actinidia09242' => 'ach', 'Actinidia09243' => 'ach', 'Actinidia09244' => 'ach', 'Actinidia18515' => 'ach', 'Actinidia24557' => 'ach', 'Ah.02g113880' => 'amhyb', 'Ah.02g113890' => 'amhyb', 'Ah.07g203550' => 'amhyb', 'Ah.11g048050' => 'amhyb', 'AL1G54910' => 'aly', 'AL6G18150' => 'aly', 'Aqoxy2G02487' => 'aox', 'Aqoxy3G00452' => 'aox', 'Aqoxy3G00457' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H98Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1X400K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PX28T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46C2EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JZ0DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZM33J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE44IX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C00RGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6KQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3EHI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYPB85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJK2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJDX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3RYPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3732C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3GI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L93FEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSIV7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5C3PT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMN4BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QKVB7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8ERLJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RDG2VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UP3S85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6XLN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMQ9AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VY9WGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WH471K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJG2SM' => 'arhy', 'AT1G48310' => 'ath', 'AT5G07810' => 'ath', 'ATR0030G060' => 'atr', 'ATR0064G032' => 'atr', 'ATR0064G082' => 'atr', 'ATR0796G053' => 'atr', 'Atru.chr4.3178' => 'acertr', 'Atru.chr4.3179' => 'acertr', 'Atru.chr9.280' => 'acertr', 'Atru.chr9.282' => 'acertr', 'AUR62002539' => 'cqu', 'AUR62008488' => 'cqu', 'AUR62008489' => 'cqu', 'AUR62021607' => 'cqu', 'AUR62021608' => 'cqu', 'AUR62023654' => 'cqu', 'BcaB02g11412' => 'bca', 'BcaC05g27587' => 'bca', 'BolC3t12927H' => 'bol', 'BolC5t32283H' => 'bol', 'BraA03t09697Z' => 'bra', 'BraA05t21018Z' => 'bra', 'BraA08t32515Z' => 'bra', 'C03p03890' => 'bna', 'C05p35670' => 'bna', 'CAN.G479.33' => 'can', 'CAN.G479.34' => 'can', 'CAN.G484.96' => 'can', 'CANSAT78G0587' => 'cansat', 'CANSAT80G0757' => 'cansat', 'CANSAT80G0851' => 'cansat', 'CARHR037930' => 'chi', 'CARHR205370' => 'chi', 'Carub.0001s3744' => 'cru', 'Carub.0006s0673' => 'cru', 'Ca_13626_v3' => 'car', 'Ca_13629_v3' => 'car', 'Ca_13630_v3' => 'car', 'Ca_21367_v3' => 'car', 'Ca_21793_v3' => 'car', 'CBR_g23187' => 'cbr', 'CBR_g29672' => 'cbr', 'CBR_g49701' => 'cbr', 'CBR_g49703' => 'cbr', 'CBR_g49704' => 'cbr', 'Cc00_g02240' => 'ccan', 'Cc00_g02250' => 'ccan', 'Cc00_g14900' => 'ccan', 'Cc00_g14910' => 'ccan', 'Cc03_g00030' => 'ccan', 'CDE04G0389' => 'cde', 'CDE07G0117' => 'cde', 'CDE07G0655' => 'cde', 'CDE07G0766' => 'cde', 'CDE11G0774' => 'cde', 'Cfa015741' => 'cfa', 'Cfa019293' => 'cfa', 'Ciclev10004488m.g' => 'ccl', 'Ciclev10018469m.g' => 'ccl', 'Ciclev10018579m.g' => 'ccl', 'CiPaw.01G127900' => 'cil', 'CiPaw.11G049400' => 'cil', 'CiPaw.11G049500' => 'cil', 'CiPaw.11G049600' => 'cil', 'ClCG05G006880' => 'cla', 'ClCG06G015860' => 'cla', 'ClCG06G015870' => 'cla', 'COL.COLO4_28308' => 'col', 'COL.COLO4_36610' => 'col', 'COL.COLO4_36884' => 'col', 'COL.COLO4_36885' => 'col', 'Cpa.g.sc146.11' => 'cpa', 'Cpa.g.sc146.12' => 'cpa', 'Cpa.g.sc2632.1' => 'cpa', 'Cpa.g.sc94.1' => 'cpa', 'Cpa.g.sc94.3' => 'cpa', 'Cpa.g.sc94.4' => 'cpa', 'Cre05.g236950' => 'cre', 'Cre12.g494200' => 'cre', 'Cre16.g679400' => 'cre', 'CsaV3_1G002690' => 'csa', 'CsaV3_1G002700' => 'csa', 'CsaV3_3G015550' => 'csa', 'CSS0007026' => 'camsi', 'CSS0042912' => 'camsi', 'CSS0045245' => 'camsi', 'DCAR_026018' => 'dca', 'DCAR_026929' => 'dca', 'DCAR_026933' => 'dca', 'DCAR_026940' => 'dca', 'DCAR_031671' => 'dca', 'Dinv10682' => 'din', 'Dinv10683' => 'din', 'Dinv24721' => 'din', 'Dinv38776' => 'din', 'Dinv38777' => 'din', 'Dinv38778' => 'din', 'Duzib068G0733' => 'dzi', 'Duzib235G1161' => 'dzi', 'ECA246G1105' => 'eca', 'ECA247G0462' => 'eca', 'EL10Ac3g06234' => 'bvu', 'EL10Ac5g11090' => 'bvu', 'Eucgr.B00565' => 'egr', 'Eucgr.B00566' => 'egr', 'Eucgr.H04132' => 'egr', 'FAN08G0876' => 'fan', 'FAN12G1186' => 'fan', 'FAN13G3105' => 'fan', 'FAN17G2195' => 'fan', 'FAN18G2329' => 'fan', 'FvH4_4g21690' => 'fve', 'FvH4_5g14340' => 'fve', 'FvH4_5g14341' => 'fve', 'Glyma.05G023300' => 'gma', 'Glyma.06G199800' => 'gma', 'Glyma.13G118200' => 'gma', 'Glyma.17G041700' => 'gma', 'Glyma.17G076400' => 'gma', 'Gohir.A03G068966' => 'ghi', 'Gohir.A03G069032' => 'ghi', 'Gohir.A06G112800' => 'ghi', 'Gohir.A11G032900' => 'ghi', 'Gohir.D03G095500' => 'ghi', 'Gohir.D06G117500' => 'ghi', 'Gohir.D11G036200' => 'ghi', 'Gorai.003G100200' => 'gra', 'Gorai.007G039000' => 'gra', 'Gorai.010G135100' => 'gra', 'GSVIVG01007916001' => 'vvi', 'GSVIVG01007917001' => 'vvi', 'GSVIVG01017700001' => 'vvi', 'HanXRQChr04g0107361' => 'han', 'HanXRQChr04g0126851' => 'han', 'HanXRQChr05g0148951' => 'han', 'HanXRQChr14g0426861' => 'han', 'Haze_00754' => 'cav', 'Haze_00755' => 'cav', 'Haze_00775' => 'cav', 'Haze_07675' => 'cav', 'Haze_07676' => 'cav', 'Haze_08734' => 'cav', 'Hma1.2p1_0060F.1_g033350' => 'hma', 'Hma1.2p1_0322F.1_g124930' => 'hma', 'Hma1.2p1_1067F.1_g253855' => 'hma', 'Hma1.2p1_1449F.1_g284110' => 'hma', 'HPP92_013436' => 'vpl', 'HPP92_013437' => 'vpl', 'HPP92_020541' => 'vpl', 'Hund02613' => 'sun', 'Hund09848' => 'sun', 'Hund22642' => 'sun', 'Lalb_Chr13g0299021' => 'lal', 'Lalb_Chr13g0302981' => 'lal', 'Lalb_Chr22g0355251' => 'lal', 'Lj1g0003467' => 'lja', 'Lj3C842G5' => 'lonja', 'Lj4g0011824' => 'lja', 'Lj4g0019577' => 'lja', 'Lj5A106T69' => 'lonja', 'Lj5A106T70' => 'lonja', 'Lj9A469T58' => 'lonja', 'Lj9A469T59' => 'lonja', 'Lj9C469T4' => 'lonja', 'Lsat_1_v5_gn_1_13760' => 'lsa', 'Lsat_1_v5_gn_5_21720' => 'lsa', 'Lsat_1_v5_gn_6_118341' => 'lsa', 'Lsat_1_v5_gn_7_27961' => 'lsa', 'Manes.03G212800' => 'mes', 'Manes.06G087600' => 'mes', 'Manes.06G087800' => 'mes', 'Mapoly0058s0117' => 'mpo', 'MBI19_g30290_MAGBIO' => 'mbi', 'MCO15G104' => 'mco', 'MCO15G340' => 'mco', 'MD13G1156900' => 'mdo', 'MD14G1208200' => 'mdo', 'MD14G1208300' => 'mdo', 'MD14G1208500' => 'mdo', 'MD16G1134000' => 'mdo', 'Medtr4g109230' => 'mtr', 'Medtr4g124090' => 'mtr', 'MELO3C006754.2' => 'cme', 'MELO3C017204.2' => 'cme', 'MELO3C017205.2' => 'cme', 'Migut.C00071' => 'egut', 'Migut.D01671' => 'egut', 'Migut.D01672' => 'egut', 'Migut.N03098' => 'egut', 'MSTRG.22009' => 'ama', 'MSTRG.9601' => 'ama', 'MSTRG.9602' => 'ama', 'Nitab4.5_0000978g0050' => 'nta', 'Nitab4.5_0002881g0060' => 'nta', 'Nitab4.5_0002881g0120' => 'nta', 'Nitab4.5_0004511g0020' => 'nta', 'Nitab4.5_0004511g0090' => 'nta', 'Nitab4.5_0012375g0010' => 'nta', 'Nitab4.5_0020510g0010' => 'nta', 'Nn1g01396' => 'nnu', 'Nn1g01397' => 'nnu', 'Nn4g23350' => 'nnu', 'Nn4g23353' => 'nnu', 'Oeu002203.3' => 'oeu', 'Oeu002204.1' => 'oeu', 'Oeu002205.2' => 'oeu', 'Oeu032213.1' => 'oeu', 'Oeu032214.1' => 'oeu', 'Oeu032215.1' => 'oeu', 'Os06g0235300' => 'osa', 'Os07g0598300' => 'osa', 'Os07g0636200' => 'osa', 'Peaxi162Scf00201g00021' => 'pax', 'Peaxi162Scf00201g00024' => 'pax', 'Peaxi162Scf00323g00935' => 'pax', 'PGR004G0096' => 'pgr', 'PGR083G0537' => 'pgr', 'PGR083G1883' => 'pgr', 'PGSC0003DMG400006818' => 'stu', 'PGSC0003DMG400024553' => 'stu', 'PGSC0003DMG400024655' => 'stu', 'Phvul.003G123100' => 'pvu', 'Phvul.003G186700' => 'pvu', 'Phvul.009G190731' => 'pvu', 'Potri.010G003300' => 'ptr', 'Potri.012G066900' => 'ptr', 'Potri.012G067000' => 'ptr', 'Pp3c11_9170' => 'ppa', 'Pp3c16_16990' => 'ppa', 'Pp3c1_13300' => 'ppa', 'Pp3c1_13308' => 'ppa', 'Pp3c1_9760' => 'ppa', 'PRCOL_00000483' => 'pco', 'PRCOL_00003710' => 'pco', 'PRCOL_00003770' => 'pco', 'Prupe.1G103200' => 'ppe', 'Prupe.5G200300' => 'ppe', 'Prupe.5G200400' => 'ppe', 'Psat0s1206g0200' => 'psa', 'Psat2g071520' => 'psa', 'Psat2g071560' => 'psa', 'Psat4g048680' => 'psa', 'Psat4g170680' => 'psa', 'Psat5g198440' => 'psa', 'PSO017G4168' => 'pso', 'PSO017G4474' => 'pso', 'PSO170G0915' => 'pso', 'PSO445G0012' => 'pso', 'PSO478G4640' => 'pso', 'QL06p014511' => 'qlo', 'QL10p018629' => 'qlo', 'RcHm_v2.0_Chr4g0427901' => 'rch', 'RcHm_v2.0_Chr7g0182391' => 'rch', 'RcHm_v2.0_Chr7g0182421' => 'rch', 'Rhsim04G0249200' => 'rsi', 'Rhsim08G0149500' => 'rsi', 'Rhsim08G0149700' => 'rsi', 'Sabra10G0002600' => 'sbr', 'Sabra12G0048100' => 'sbr', 'Sabra12G0048200' => 'sbr', 'SalBow6G2708' => 'sbo', 'SalBow7G3498' => 'sbo', 'SalBow7G3861' => 'sbo', 'Sc12g0006560' => 'sci', 'Sc12g0006570' => 'sci', 'Sc25g0001840' => 'sci', 'Sed0002195' => 'sed', 'Sed0007966' => 'sed', 'Sed0027646' => 'sed', 'SEGI_05145' => 'sgi', 'SEGI_10628' => 'sgi', 'SEGI_25363' => 'sgi', 'SEGI_26199' => 'sgi', 'SEGI_29143' => 'sgi', 'SEGI_38041' => 'sgi', 'SGA_v2.0_scaffold322G48597' => 'sas', 'SGA_v2.0_scaffold3G01735' => 'sas', 'SGA_v2.0_scaffold65G22108' => 'sas', 'SHI26980' => 'shi', 'SHI26981' => 'shi', 'SMO117G0045' => 'smo', 'SMO358G0589' => 'smo', 'SMO364G0824' => 'smo', 'Solyc03g115510.3' => 'sly', 'Solyc03g115530.4' => 'sly', 'Solyc12g098860.2' => 'sly', 'Sopen03g034510' => 'spe', 'Sopen03g034520' => 'spe', 'Sopen12g033610' => 'spe', 'Sp1g35260' => 'spa', 'Sp6g35120' => 'spa', 'TAR362G1045' => 'tar', 'TAR371G0783' => 'tar', 'TAR371G1295' => 'tar', 'TAR376G0971' => 'tar', 'TAR629G0913' => 'tar', 'TAR629G3362' => 'tar', 'THA.LOC104802617' => 'tha', 'THA.LOC104818327' => 'tha', 'Thecc.03G096600' => 'tca', 'Thecc.03G096700' => 'tca', 'Thecc.05G189900' => 'tca', 'Thhalv10011287m.g' => 'esa', 'Thhalv10012481m.g' => 'esa', 'TPR.G12256' => 'tpr', 'TPR.G12547' => 'tpr', 'TPR.G2046' => 'tpr', 'TWI15G0866' => 'twi', 'TWI15G1152' => 'twi', 'TWI77G0300' => 'twi', 'unitig_0.g11' => 'ugi', 'unitig_0.g12' => 'ugi', 'unitig_37.g12720' => 'ugi', 'unitig_37.g12721' => 'ugi', 'unitig_37.g12722' => 'ugi', 'unitig_8.g3632' => 'ugi', 'vmacro08016' => 'vma', 'vmacro17583' => 'vma', 'vmacro17585' => 'vma', 'vmacro17586' => 'vma', 'VMungo1215G3312' => 'vmu', 'VMungo1215G3338' => 'vmu', 'VMungo1309G2646' => 'vmu', 'VMungo1309G2923' => 'vmu', 'Zm00001eb108430' => 'zma', 'Zm00001eb326710' => 'zma', 'Zm00001eb328680' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001674' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001674' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001674' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001674' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001674', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '386', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p03470' => 'bna', 'A05p21130' => 'bna', 'A08p04890' => 'bna', 'Aa31LG10G5460' => 'aar', 'Aa31LG3G18650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3709' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3354' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3356' => 'aag', 'Actinidia04849' => 'ach', 'Actinidia09199' => 'ach', 'Actinidia09202' => 'ach', 'Actinidia09203' => 'ach', 'Actinidia09209' => 'ach', 'Actinidia09210' => 'ach', 'Actinidia09211' => 'ach', 'Actinidia09242' => 'ach', 'Actinidia09243' => 'ach', 'Actinidia09244' => 'ach', 'Actinidia18515' => 'ach', 'Actinidia24557' => 'ach', 'Ah.02g113880' => 'amhyb', 'Ah.02g113890' => 'amhyb', 'Ah.07g203550' => 'amhyb', 'Ah.11g048050' => 'amhyb', 'AL1G54910' => 'aly', 'AL6G18150' => 'aly', 'Aqoxy2G02487' => 'aox', 'Aqoxy3G00452' => 'aox', 'Aqoxy3G00457' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H98Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1X400K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PX28T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46C2EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JZ0DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZM33J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE44IX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C00RGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6KQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3EHI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYPB85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJK2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJDX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3RYPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3732C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3GI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L93FEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSIV7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5C3PT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMN4BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QKVB7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8ERLJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RDG2VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UP3S85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6XLN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMQ9AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VY9WGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WH471K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJG2SM' => 'arhy', 'AT1G48310' => 'ath', 'AT5G07810' => 'ath', 'ATR0030G060' => 'atr', 'ATR0064G032' => 'atr', 'ATR0064G082' => 'atr', 'ATR0796G053' => 'atr', 'Atru.chr4.3178' => 'acertr', 'Atru.chr4.3179' => 'acertr', 'Atru.chr9.280' => 'acertr', 'Atru.chr9.282' => 'acertr', 'AUR62002539' => 'cqu', 'AUR62008488' => 'cqu', 'AUR62008489' => 'cqu', 'AUR62021607' => 'cqu', 'AUR62021608' => 'cqu', 'AUR62023654' => 'cqu', 'BcaB02g11412' => 'bca', 'BcaC05g27587' => 'bca', 'BolC3t12927H' => 'bol', 'BolC5t32283H' => 'bol', 'BraA03t09697Z' => 'bra', 'BraA05t21018Z' => 'bra', 'BraA08t32515Z' => 'bra', 'C03p03890' => 'bna', 'C05p35670' => 'bna', 'CAN.G479.33' => 'can', 'CAN.G479.34' => 'can', 'CAN.G484.96' => 'can', 'CANSAT78G0587' => 'cansat', 'CANSAT80G0757' => 'cansat', 'CANSAT80G0851' => 'cansat', 'CARHR037930' => 'chi', 'CARHR205370' => 'chi', 'Carub.0001s3744' => 'cru', 'Carub.0006s0673' => 'cru', 'Ca_13626_v3' => 'car', 'Ca_13629_v3' => 'car', 'Ca_13630_v3' => 'car', 'Ca_21367_v3' => 'car', 'Ca_21793_v3' => 'car', 'CBR_g23187' => 'cbr', 'CBR_g29672' => 'cbr', 'CBR_g49701' => 'cbr', 'CBR_g49703' => 'cbr', 'CBR_g49704' => 'cbr', 'Cc00_g02240' => 'ccan', 'Cc00_g02250' => 'ccan', 'Cc00_g14900' => 'ccan', 'Cc00_g14910' => 'ccan', 'Cc03_g00030' => 'ccan', 'CDE04G0389' => 'cde', 'CDE07G0117' => 'cde', 'CDE07G0655' => 'cde', 'CDE07G0766' => 'cde', 'CDE11G0774' => 'cde', 'Cfa015741' => 'cfa', 'Cfa019293' => 'cfa', 'Ciclev10004488m.g' => 'ccl', 'Ciclev10018469m.g' => 'ccl', 'Ciclev10018579m.g' => 'ccl', 'CiPaw.01G127900' => 'cil', 'CiPaw.11G049400' => 'cil', 'CiPaw.11G049500' => 'cil', 'CiPaw.11G049600' => 'cil', 'ClCG05G006880' => 'cla', 'ClCG06G015860' => 'cla', 'ClCG06G015870' => 'cla', 'COL.COLO4_28308' => 'col', 'COL.COLO4_36610' => 'col', 'COL.COLO4_36884' => 'col', 'COL.COLO4_36885' => 'col', 'Cpa.g.sc146.11' => 'cpa', 'Cpa.g.sc146.12' => 'cpa', 'Cpa.g.sc2632.1' => 'cpa', 'Cpa.g.sc94.1' => 'cpa', 'Cpa.g.sc94.3' => 'cpa', 'Cpa.g.sc94.4' => 'cpa', 'Cre05.g236950' => 'cre', 'Cre12.g494200' => 'cre', 'Cre16.g679400' => 'cre', 'CsaV3_1G002690' => 'csa', 'CsaV3_1G002700' => 'csa', 'CsaV3_3G015550' => 'csa', 'CSS0007026' => 'camsi', 'CSS0042912' => 'camsi', 'CSS0045245' => 'camsi', 'DCAR_026018' => 'dca', 'DCAR_026929' => 'dca', 'DCAR_026933' => 'dca', 'DCAR_026940' => 'dca', 'DCAR_031671' => 'dca', 'Dinv10682' => 'din', 'Dinv10683' => 'din', 'Dinv24721' => 'din', 'Dinv38776' => 'din', 'Dinv38777' => 'din', 'Dinv38778' => 'din', 'Duzib068G0733' => 'dzi', 'Duzib235G1161' => 'dzi', 'ECA246G1105' => 'eca', 'ECA247G0462' => 'eca', 'EL10Ac3g06234' => 'bvu', 'EL10Ac5g11090' => 'bvu', 'Eucgr.B00565' => 'egr', 'Eucgr.B00566' => 'egr', 'Eucgr.H04132' => 'egr', 'FAN08G0876' => 'fan', 'FAN12G1186' => 'fan', 'FAN13G3105' => 'fan', 'FAN17G2195' => 'fan', 'FAN18G2329' => 'fan', 'FvH4_4g21690' => 'fve', 'FvH4_5g14340' => 'fve', 'FvH4_5g14341' => 'fve', 'Glyma.05G023300' => 'gma', 'Glyma.06G199800' => 'gma', 'Glyma.13G118200' => 'gma', 'Glyma.17G041700' => 'gma', 'Glyma.17G076400' => 'gma', 'Gohir.A03G068966' => 'ghi', 'Gohir.A03G069032' => 'ghi', 'Gohir.A06G112800' => 'ghi', 'Gohir.A11G032900' => 'ghi', 'Gohir.D03G095500' => 'ghi', 'Gohir.D06G117500' => 'ghi', 'Gohir.D11G036200' => 'ghi', 'Gorai.003G100200' => 'gra', 'Gorai.007G039000' => 'gra', 'Gorai.010G135100' => 'gra', 'GSVIVG01007916001' => 'vvi', 'GSVIVG01007917001' => 'vvi', 'GSVIVG01017700001' => 'vvi', 'HanXRQChr04g0107361' => 'han', 'HanXRQChr04g0126851' => 'han', 'HanXRQChr05g0148951' => 'han', 'HanXRQChr14g0426861' => 'han', 'Haze_00754' => 'cav', 'Haze_00755' => 'cav', 'Haze_00775' => 'cav', 'Haze_07675' => 'cav', 'Haze_07676' => 'cav', 'Haze_08734' => 'cav', 'Hma1.2p1_0060F.1_g033350' => 'hma', 'Hma1.2p1_0322F.1_g124930' => 'hma', 'Hma1.2p1_1067F.1_g253855' => 'hma', 'Hma1.2p1_1449F.1_g284110' => 'hma', 'HPP92_013436' => 'vpl', 'HPP92_013437' => 'vpl', 'HPP92_020541' => 'vpl', 'Hund02613' => 'sun', 'Hund09848' => 'sun', 'Hund22642' => 'sun', 'Lalb_Chr13g0299021' => 'lal', 'Lalb_Chr13g0302981' => 'lal', 'Lalb_Chr22g0355251' => 'lal', 'Lj1g0003467' => 'lja', 'Lj3C842G5' => 'lonja', 'Lj4g0011824' => 'lja', 'Lj4g0019577' => 'lja', 'Lj5A106T69' => 'lonja', 'Lj5A106T70' => 'lonja', 'Lj9A469T58' => 'lonja', 'Lj9A469T59' => 'lonja', 'Lj9C469T4' => 'lonja', 'Lsat_1_v5_gn_1_13760' => 'lsa', 'Lsat_1_v5_gn_5_21720' => 'lsa', 'Lsat_1_v5_gn_6_118341' => 'lsa', 'Lsat_1_v5_gn_7_27961' => 'lsa', 'Manes.03G212800' => 'mes', 'Manes.06G087600' => 'mes', 'Manes.06G087800' => 'mes', 'Mapoly0058s0117' => 'mpo', 'MBI19_g30290_MAGBIO' => 'mbi', 'MCO15G104' => 'mco', 'MCO15G340' => 'mco', 'MD13G1156900' => 'mdo', 'MD14G1208200' => 'mdo', 'MD14G1208300' => 'mdo', 'MD14G1208500' => 'mdo', 'MD16G1134000' => 'mdo', 'Medtr4g109230' => 'mtr', 'Medtr4g124090' => 'mtr', 'MELO3C006754.2' => 'cme', 'MELO3C017204.2' => 'cme', 'MELO3C017205.2' => 'cme', 'Migut.C00071' => 'egut', 'Migut.D01671' => 'egut', 'Migut.D01672' => 'egut', 'Migut.N03098' => 'egut', 'MSTRG.22009' => 'ama', 'MSTRG.9601' => 'ama', 'MSTRG.9602' => 'ama', 'Nitab4.5_0000978g0050' => 'nta', 'Nitab4.5_0002881g0060' => 'nta', 'Nitab4.5_0002881g0120' => 'nta', 'Nitab4.5_0004511g0020' => 'nta', 'Nitab4.5_0004511g0090' => 'nta', 'Nitab4.5_0012375g0010' => 'nta', 'Nitab4.5_0020510g0010' => 'nta', 'Nn1g01396' => 'nnu', 'Nn1g01397' => 'nnu', 'Nn4g23350' => 'nnu', 'Nn4g23353' => 'nnu', 'Oeu002203.3' => 'oeu', 'Oeu002204.1' => 'oeu', 'Oeu002205.2' => 'oeu', 'Oeu032213.1' => 'oeu', 'Oeu032214.1' => 'oeu', 'Oeu032215.1' => 'oeu', 'Os06g0235300' => 'osa', 'Os07g0598300' => 'osa', 'Os07g0636200' => 'osa', 'Peaxi162Scf00201g00021' => 'pax', 'Peaxi162Scf00201g00024' => 'pax', 'Peaxi162Scf00323g00935' => 'pax', 'PGR004G0096' => 'pgr', 'PGR083G0537' => 'pgr', 'PGR083G1883' => 'pgr', 'PGSC0003DMG400006818' => 'stu', 'PGSC0003DMG400024553' => 'stu', 'PGSC0003DMG400024655' => 'stu', 'Phvul.003G123100' => 'pvu', 'Phvul.003G186700' => 'pvu', 'Phvul.009G190731' => 'pvu', 'Potri.010G003300' => 'ptr', 'Potri.012G066900' => 'ptr', 'Potri.012G067000' => 'ptr', 'Pp3c11_9170' => 'ppa', 'Pp3c16_16990' => 'ppa', 'Pp3c1_13300' => 'ppa', 'Pp3c1_13308' => 'ppa', 'Pp3c1_9760' => 'ppa', 'PRCOL_00000483' => 'pco', 'PRCOL_00003710' => 'pco', 'PRCOL_00003770' => 'pco', 'Prupe.1G103200' => 'ppe', 'Prupe.5G200300' => 'ppe', 'Prupe.5G200400' => 'ppe', 'Psat0s1206g0200' => 'psa', 'Psat2g071520' => 'psa', 'Psat2g071560' => 'psa', 'Psat4g048680' => 'psa', 'Psat4g170680' => 'psa', 'Psat5g198440' => 'psa', 'PSO017G4168' => 'pso', 'PSO017G4474' => 'pso', 'PSO170G0915' => 'pso', 'PSO445G0012' => 'pso', 'PSO478G4640' => 'pso', 'QL06p014511' => 'qlo', 'QL10p018629' => 'qlo', 'RcHm_v2.0_Chr4g0427901' => 'rch', 'RcHm_v2.0_Chr7g0182391' => 'rch', 'RcHm_v2.0_Chr7g0182421' => 'rch', 'Rhsim04G0249200' => 'rsi', 'Rhsim08G0149500' => 'rsi', 'Rhsim08G0149700' => 'rsi', 'Sabra10G0002600' => 'sbr', 'Sabra12G0048100' => 'sbr', 'Sabra12G0048200' => 'sbr', 'SalBow6G2708' => 'sbo', 'SalBow7G3498' => 'sbo', 'SalBow7G3861' => 'sbo', 'Sc12g0006560' => 'sci', 'Sc12g0006570' => 'sci', 'Sc25g0001840' => 'sci', 'Sed0002195' => 'sed', 'Sed0007966' => 'sed', 'Sed0027646' => 'sed', 'SEGI_05145' => 'sgi', 'SEGI_10628' => 'sgi', 'SEGI_25363' => 'sgi', 'SEGI_26199' => 'sgi', 'SEGI_29143' => 'sgi', 'SEGI_38041' => 'sgi', 'SGA_v2.0_scaffold322G48597' => 'sas', 'SGA_v2.0_scaffold3G01735' => 'sas', 'SGA_v2.0_scaffold65G22108' => 'sas', 'SHI26980' => 'shi', 'SHI26981' => 'shi', 'SMO117G0045' => 'smo', 'SMO358G0589' => 'smo', 'SMO364G0824' => 'smo', 'Solyc03g115510.3' => 'sly', 'Solyc03g115530.4' => 'sly', 'Solyc12g098860.2' => 'sly', 'Sopen03g034510' => 'spe', 'Sopen03g034520' => 'spe', 'Sopen12g033610' => 'spe', 'Sp1g35260' => 'spa', 'Sp6g35120' => 'spa', 'TAR362G1045' => 'tar', 'TAR371G0783' => 'tar', 'TAR371G1295' => 'tar', 'TAR376G0971' => 'tar', 'TAR629G0913' => 'tar', 'TAR629G3362' => 'tar', 'THA.LOC104802617' => 'tha', 'THA.LOC104818327' => 'tha', 'Thecc.03G096600' => 'tca', 'Thecc.03G096700' => 'tca', 'Thecc.05G189900' => 'tca', 'Thhalv10011287m.g' => 'esa', 'Thhalv10012481m.g' => 'esa', 'TPR.G12256' => 'tpr', 'TPR.G12547' => 'tpr', 'TPR.G2046' => 'tpr', 'TWI15G0866' => 'twi', 'TWI15G1152' => 'twi', 'TWI77G0300' => 'twi', 'unitig_0.g11' => 'ugi', 'unitig_0.g12' => 'ugi', 'unitig_37.g12720' => 'ugi', 'unitig_37.g12721' => 'ugi', 'unitig_37.g12722' => 'ugi', 'unitig_8.g3632' => 'ugi', 'vmacro08016' => 'vma', 'vmacro17583' => 'vma', 'vmacro17585' => 'vma', 'vmacro17586' => 'vma', 'VMungo1215G3312' => 'vmu', 'VMungo1215G3338' => 'vmu', 'VMungo1309G2646' => 'vmu', 'VMungo1309G2923' => 'vmu', 'Zm00001eb108430' => 'zma', 'Zm00001eb326710' => 'zma', 'Zm00001eb328680' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001674', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001674' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001674', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '386', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001674' ) ), 'genes' => array( 'A03p03470' => 'bna', 'A05p21130' => 'bna', 'A08p04890' => 'bna', 'Aa31LG10G5460' => 'aar', 'Aa31LG3G18650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3709' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3354' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3356' => 'aag', 'Actinidia04849' => 'ach', 'Actinidia09199' => 'ach', 'Actinidia09202' => 'ach', 'Actinidia09203' => 'ach', 'Actinidia09209' => 'ach', 'Actinidia09210' => 'ach', 'Actinidia09211' => 'ach', 'Actinidia09242' => 'ach', 'Actinidia09243' => 'ach', 'Actinidia09244' => 'ach', 'Actinidia18515' => 'ach', 'Actinidia24557' => 'ach', 'Ah.02g113880' => 'amhyb', 'Ah.02g113890' => 'amhyb', 'Ah.07g203550' => 'amhyb', 'Ah.11g048050' => 'amhyb', 'AL1G54910' => 'aly', 'AL6G18150' => 'aly', 'Aqoxy2G02487' => 'aox', 'Aqoxy3G00452' => 'aox', 'Aqoxy3G00457' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H98Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1X400K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PX28T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46C2EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JZ0DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZM33J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE44IX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C00RGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6KQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3EHI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYPB85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJK2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJDX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3RYPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3732C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3GI5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L93FEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSIV7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5C3PT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMN4BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QKVB7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8ERLJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RDG2VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UP3S85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6XLN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMQ9AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VY9WGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WH471K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJG2SM' => 'arhy', 'AT1G48310' => 'ath', 'AT5G07810' => 'ath', 'ATR0030G060' => 'atr', 'ATR0064G032' => 'atr', 'ATR0064G082' => 'atr', 'ATR0796G053' => 'atr', 'Atru.chr4.3178' => 'acertr', 'Atru.chr4.3179' => 'acertr', 'Atru.chr9.280' => 'acertr', 'Atru.chr9.282' => 'acertr', 'AUR62002539' => 'cqu', 'AUR62008488' => 'cqu', 'AUR62008489' => 'cqu', 'AUR62021607' => 'cqu', 'AUR62021608' => 'cqu', 'AUR62023654' => 'cqu', 'BcaB02g11412' => 'bca', 'BcaC05g27587' => 'bca', 'BolC3t12927H' => 'bol', 'BolC5t32283H' => 'bol', 'BraA03t09697Z' => 'bra', 'BraA05t21018Z' => 'bra', 'BraA08t32515Z' => 'bra', 'C03p03890' => 'bna', 'C05p35670' => 'bna', 'CAN.G479.33' => 'can', 'CAN.G479.34' => 'can', 'CAN.G484.96' => 'can', 'CANSAT78G0587' => 'cansat', 'CANSAT80G0757' => 'cansat', 'CANSAT80G0851' => 'cansat', 'CARHR037930' => 'chi', 'CARHR205370' => 'chi', 'Carub.0001s3744' => 'cru', 'Carub.0006s0673' => 'cru', 'Ca_13626_v3' => 'car', 'Ca_13629_v3' => 'car', 'Ca_13630_v3' => 'car', 'Ca_21367_v3' => 'car', 'Ca_21793_v3' => 'car', 'CBR_g23187' => 'cbr', 'CBR_g29672' => 'cbr', 'CBR_g49701' => 'cbr', 'CBR_g49703' => 'cbr', 'CBR_g49704' => 'cbr', 'Cc00_g02240' => 'ccan', 'Cc00_g02250' => 'ccan', 'Cc00_g14900' => 'ccan', 'Cc00_g14910' => 'ccan', 'Cc03_g00030' => 'ccan', 'CDE04G0389' => 'cde', 'CDE07G0117' => 'cde', 'CDE07G0655' => 'cde', 'CDE07G0766' => 'cde', 'CDE11G0774' => 'cde', 'Cfa015741' => 'cfa', 'Cfa019293' => 'cfa', 'Ciclev10004488m.g' => 'ccl', 'Ciclev10018469m.g' => 'ccl', 'Ciclev10018579m.g' => 'ccl', 'CiPaw.01G127900' => 'cil', 'CiPaw.11G049400' => 'cil', 'CiPaw.11G049500' => 'cil', 'CiPaw.11G049600' => 'cil', 'ClCG05G006880' => 'cla', 'ClCG06G015860' => 'cla', 'ClCG06G015870' => 'cla', 'COL.COLO4_28308' => 'col', 'COL.COLO4_36610' => 'col', 'COL.COLO4_36884' => 'col', 'COL.COLO4_36885' => 'col', 'Cpa.g.sc146.11' => 'cpa', 'Cpa.g.sc146.12' => 'cpa', 'Cpa.g.sc2632.1' => 'cpa', 'Cpa.g.sc94.1' => 'cpa', 'Cpa.g.sc94.3' => 'cpa', 'Cpa.g.sc94.4' => 'cpa', 'Cre05.g236950' => 'cre', 'Cre12.g494200' => 'cre', 'Cre16.g679400' => 'cre', 'CsaV3_1G002690' => 'csa', 'CsaV3_1G002700' => 'csa', 'CsaV3_3G015550' => 'csa', 'CSS0007026' => 'camsi', 'CSS0042912' => 'camsi', 'CSS0045245' => 'camsi', 'DCAR_026018' => 'dca', 'DCAR_026929' => 'dca', 'DCAR_026933' => 'dca', 'DCAR_026940' => 'dca', 'DCAR_031671' => 'dca', 'Dinv10682' => 'din', 'Dinv10683' => 'din', 'Dinv24721' => 'din', 'Dinv38776' => 'din', 'Dinv38777' => 'din', 'Dinv38778' => 'din', 'Duzib068G0733' => 'dzi', 'Duzib235G1161' => 'dzi', 'ECA246G1105' => 'eca', 'ECA247G0462' => 'eca', 'EL10Ac3g06234' => 'bvu', 'EL10Ac5g11090' => 'bvu', 'Eucgr.B00565' => 'egr', 'Eucgr.B00566' => 'egr', 'Eucgr.H04132' => 'egr', 'FAN08G0876' => 'fan', 'FAN12G1186' => 'fan', 'FAN13G3105' => 'fan', 'FAN17G2195' => 'fan', 'FAN18G2329' => 'fan', 'FvH4_4g21690' => 'fve', 'FvH4_5g14340' => 'fve', 'FvH4_5g14341' => 'fve', 'Glyma.05G023300' => 'gma', 'Glyma.06G199800' => 'gma', 'Glyma.13G118200' => 'gma', 'Glyma.17G041700' => 'gma', 'Glyma.17G076400' => 'gma', 'Gohir.A03G068966' => 'ghi', 'Gohir.A03G069032' => 'ghi', 'Gohir.A06G112800' => 'ghi', 'Gohir.A11G032900' => 'ghi', 'Gohir.D03G095500' => 'ghi', 'Gohir.D06G117500' => 'ghi', 'Gohir.D11G036200' => 'ghi', 'Gorai.003G100200' => 'gra', 'Gorai.007G039000' => 'gra', 'Gorai.010G135100' => 'gra', 'GSVIVG01007916001' => 'vvi', 'GSVIVG01007917001' => 'vvi', 'GSVIVG01017700001' => 'vvi', 'HanXRQChr04g0107361' => 'han', 'HanXRQChr04g0126851' => 'han', 'HanXRQChr05g0148951' => 'han', 'HanXRQChr14g0426861' => 'han', 'Haze_00754' => 'cav', 'Haze_00755' => 'cav', 'Haze_00775' => 'cav', 'Haze_07675' => 'cav', 'Haze_07676' => 'cav', 'Haze_08734' => 'cav', 'Hma1.2p1_0060F.1_g033350' => 'hma', 'Hma1.2p1_0322F.1_g124930' => 'hma', 'Hma1.2p1_1067F.1_g253855' => 'hma', 'Hma1.2p1_1449F.1_g284110' => 'hma', 'HPP92_013436' => 'vpl', 'HPP92_013437' => 'vpl', 'HPP92_020541' => 'vpl', 'Hund02613' => 'sun', 'Hund09848' => 'sun', 'Hund22642' => 'sun', 'Lalb_Chr13g0299021' => 'lal', 'Lalb_Chr13g0302981' => 'lal', 'Lalb_Chr22g0355251' => 'lal', 'Lj1g0003467' => 'lja', 'Lj3C842G5' => 'lonja', 'Lj4g0011824' => 'lja', 'Lj4g0019577' => 'lja', 'Lj5A106T69' => 'lonja', 'Lj5A106T70' => 'lonja', 'Lj9A469T58' => 'lonja', 'Lj9A469T59' => 'lonja', 'Lj9C469T4' => 'lonja', 'Lsat_1_v5_gn_1_13760' => 'lsa', 'Lsat_1_v5_gn_5_21720' => 'lsa', 'Lsat_1_v5_gn_6_118341' => 'lsa', 'Lsat_1_v5_gn_7_27961' => 'lsa', 'Manes.03G212800' => 'mes', 'Manes.06G087600' => 'mes', 'Manes.06G087800' => 'mes', 'Mapoly0058s0117' => 'mpo', 'MBI19_g30290_MAGBIO' => 'mbi', 'MCO15G104' => 'mco', 'MCO15G340' => 'mco', 'MD13G1156900' => 'mdo', 'MD14G1208200' => 'mdo', 'MD14G1208300' => 'mdo', 'MD14G1208500' => 'mdo', 'MD16G1134000' => 'mdo', 'Medtr4g109230' => 'mtr', 'Medtr4g124090' => 'mtr', 'MELO3C006754.2' => 'cme', 'MELO3C017204.2' => 'cme', 'MELO3C017205.2' => 'cme', 'Migut.C00071' => 'egut', 'Migut.D01671' => 'egut', 'Migut.D01672' => 'egut', 'Migut.N03098' => 'egut', 'MSTRG.22009' => 'ama', 'MSTRG.9601' => 'ama', 'MSTRG.9602' => 'ama', 'Nitab4.5_0000978g0050' => 'nta', 'Nitab4.5_0002881g0060' => 'nta', 'Nitab4.5_0002881g0120' => 'nta', 'Nitab4.5_0004511g0020' => 'nta', 'Nitab4.5_0004511g0090' => 'nta', 'Nitab4.5_0012375g0010' => 'nta', 'Nitab4.5_0020510g0010' => 'nta', 'Nn1g01396' => 'nnu', 'Nn1g01397' => 'nnu', 'Nn4g23350' => 'nnu', 'Nn4g23353' => 'nnu', 'Oeu002203.3' => 'oeu', 'Oeu002204.1' => 'oeu', 'Oeu002205.2' => 'oeu', 'Oeu032213.1' => 'oeu', 'Oeu032214.1' => 'oeu', 'Oeu032215.1' => 'oeu', 'Os06g0235300' => 'osa', 'Os07g0598300' => 'osa', 'Os07g0636200' => 'osa', 'Peaxi162Scf00201g00021' => 'pax', 'Peaxi162Scf00201g00024' => 'pax', 'Peaxi162Scf00323g00935' => 'pax', 'PGR004G0096' => 'pgr', 'PGR083G0537' => 'pgr', 'PGR083G1883' => 'pgr', 'PGSC0003DMG400006818' => 'stu', 'PGSC0003DMG400024553' => 'stu', 'PGSC0003DMG400024655' => 'stu', 'Phvul.003G123100' => 'pvu', 'Phvul.003G186700' => 'pvu', 'Phvul.009G190731' => 'pvu', 'Potri.010G003300' => 'ptr', 'Potri.012G066900' => 'ptr', 'Potri.012G067000' => 'ptr', 'Pp3c11_9170' => 'ppa', 'Pp3c16_16990' => 'ppa', 'Pp3c1_13300' => 'ppa', 'Pp3c1_13308' => 'ppa', 'Pp3c1_9760' => 'ppa', 'PRCOL_00000483' => 'pco', 'PRCOL_00003710' => 'pco', 'PRCOL_00003770' => 'pco', 'Prupe.1G103200' => 'ppe', 'Prupe.5G200300' => 'ppe', 'Prupe.5G200400' => 'ppe', 'Psat0s1206g0200' => 'psa', 'Psat2g071520' => 'psa', 'Psat2g071560' => 'psa', 'Psat4g048680' => 'psa', 'Psat4g170680' => 'psa', 'Psat5g198440' => 'psa', 'PSO017G4168' => 'pso', 'PSO017G4474' => 'pso', 'PSO170G0915' => 'pso', 'PSO445G0012' => 'pso', 'PSO478G4640' => 'pso', 'QL06p014511' => 'qlo', 'QL10p018629' => 'qlo', 'RcHm_v2.0_Chr4g0427901' => 'rch', 'RcHm_v2.0_Chr7g0182391' => 'rch', 'RcHm_v2.0_Chr7g0182421' => 'rch', 'Rhsim04G0249200' => 'rsi', 'Rhsim08G0149500' => 'rsi', 'Rhsim08G0149700' => 'rsi', 'Sabra10G0002600' => 'sbr', 'Sabra12G0048100' => 'sbr', 'Sabra12G0048200' => 'sbr', 'SalBow6G2708' => 'sbo', 'SalBow7G3498' => 'sbo', 'SalBow7G3861' => 'sbo', 'Sc12g0006560' => 'sci', 'Sc12g0006570' => 'sci', 'Sc25g0001840' => 'sci', 'Sed0002195' => 'sed', 'Sed0007966' => 'sed', 'Sed0027646' => 'sed', 'SEGI_05145' => 'sgi', 'SEGI_10628' => 'sgi', 'SEGI_25363' => 'sgi', 'SEGI_26199' => 'sgi', 'SEGI_29143' => 'sgi', 'SEGI_38041' => 'sgi', 'SGA_v2.0_scaffold322G48597' => 'sas', 'SGA_v2.0_scaffold3G01735' => 'sas', 'SGA_v2.0_scaffold65G22108' => 'sas', 'SHI26980' => 'shi', 'SHI26981' => 'shi', 'SMO117G0045' => 'smo', 'SMO358G0589' => 'smo', 'SMO364G0824' => 'smo', 'Solyc03g115510.3' => 'sly', 'Solyc03g115530.4' => 'sly', 'Solyc12g098860.2' => 'sly', 'Sopen03g034510' => 'spe', 'Sopen03g034520' => 'spe', 'Sopen12g033610' => 'spe', 'Sp1g35260' => 'spa', 'Sp6g35120' => 'spa', 'TAR362G1045' => 'tar', 'TAR371G0783' => 'tar', 'TAR371G1295' => 'tar', 'TAR376G0971' => 'tar', 'TAR629G0913' => 'tar', 'TAR629G3362' => 'tar', 'THA.LOC104802617' => 'tha', 'THA.LOC104818327' => 'tha', 'Thecc.03G096600' => 'tca', 'Thecc.03G096700' => 'tca', 'Thecc.05G189900' => 'tca', 'Thhalv10011287m.g' => 'esa', 'Thhalv10012481m.g' => 'esa', 'TPR.G12256' => 'tpr', 'TPR.G12547' => 'tpr', 'TPR.G2046' => 'tpr', 'TWI15G0866' => 'twi', 'TWI15G1152' => 'twi', 'TWI77G0300' => 'twi', 'unitig_0.g11' => 'ugi', 'unitig_0.g12' => 'ugi', 'unitig_37.g12720' => 'ugi', 'unitig_37.g12721' => 'ugi', 'unitig_37.g12722' => 'ugi', 'unitig_8.g3632' => 'ugi', 'vmacro08016' => 'vma', 'vmacro17583' => 'vma', 'vmacro17585' => 'vma', 'vmacro17586' => 'vma', 'VMungo1215G3312' => 'vmu', 'VMungo1215G3338' => 'vmu', 'VMungo1309G2646' => 'vmu', 'VMungo1309G2923' => 'vmu', 'Zm00001eb108430' => 'zma', 'Zm00001eb326710' => 'zma', 'Zm00001eb328680' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001674' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001674' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001674' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001674' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151