Gene: AT1G48310

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G48310
  • Transcript Identifier AT1G48310.1
  • Gene Type Coding gene
  • Location Chr1 : 17848620-17853731 : negative

Gene Family Information

  • ID HOM05D001674
  • #Genes/#Species 386/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G48310.1
  • symbol CHR18
  • Alias CHA18
  • uniprot F4HWU9

Descriptions

  • Description chromatin remodeling factor18
  • Computational description chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031297
IBA
IEA
Gene Ontologyreplication fork processing1
GO:0031297
IEA
InterProreplication fork processing
GO:0006281
IBA
IEA
Gene OntologyDNA repair1
GO:0006281
IEA
InterProDNA repair
GO:0048478
IBA
Gene Ontologyreplication fork protection1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0036310
IEA
Gene Ontologyannealing activity
GO:0036310
IEA
InterProannealing activity
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0043596
IBA
Gene Ontologynuclear replication fork1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR000330 SNF2, N-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR038718 SNF2-like, N-terminal domain superfamily
IPR030101 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
Mapman id Description
12.4.8.4.1 Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.SMARCAL1-like group.chromatin remodeling factor (SMARCAL1)