Gene: AT5G07810

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G07810
  • Transcript Identifier AT5G07810.1
  • Gene Type Coding gene
  • Location Chr5 : 2491412-2498484 : negative

Gene Family Information

  • ID HOM05D001674
  • #Genes/#Species 386/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G07810.1
  • uniprot F4K856

Descriptions

  • Description SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
  • Computational description SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), HNH endonuclease (InterPro:IPR002711), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor18 (TAIR:AT1G48310.1); Has 16904 Blast hits to 14939 proteins in 1977 species: Archae - 110; Bacteria - 5677; Metazoa - 3556; Fungi - 3371; Plants - 1315; Viruses - 123; Other Eukaryotes - 2752 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006281
IBA
Gene OntologyDNA repair1
GO:0048478
IBA
Gene Ontologyreplication fork protection1
GO:0031297
IBA
Gene Ontologyreplication fork processing1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0004519
IEA
InterProendonuclease activity
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004520
IBA
Gene Ontologyendodeoxyribonuclease activity1
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043596
IBA
Gene Ontologynuclear replication fork1
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000330 SNF2, N-terminal
IPR001650 Helicase, C-terminal
IPR038718 SNF2-like, N-terminal domain superfamily
IPR003615 HNH nuclease
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR002711 HNH endonuclease
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
12.4.8.4.1 Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.SMARCAL1-like group.chromatin remodeling factor (SMARCAL1)