Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p35970 Brassica napus
A05p31300 Brassica napus
A06p11210 Brassica napus
Aa31LG7G20 Aethionema arabicum
Aa31LG8G5210 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2783 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3854 Anthoceros agrestis
Actinidia09005 Actinidia chinensis
Actinidia14385 Actinidia chinensis
Actinidia14684 Actinidia chinensis
Actinidia15743 Actinidia chinensis
Actinidia21707 Actinidia chinensis
Actinidia28186 Actinidia chinensis
Actinidia30285 Actinidia chinensis
Actinidia32698 Actinidia chinensis
Actinidia39137 Actinidia chinensis
Ah.01g022000 Amaranthus hybridus
Ah.04g164450 Amaranthus hybridus
Ah.06g184900 Amaranthus hybridus
Ah.06g184930 Amaranthus hybridus
Ah.16g105970 Amaranthus hybridus
AL1G27300 Arabidopsis lyrata
AL3G31670 Arabidopsis lyrata
Aqoxy3G01822 Aquilegia oxysepala
Aqoxy7G03880 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.440ZV2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4S52N9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5XLE41 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ARI2AB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GD4ZSB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LNW2E9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NJK3G3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y004SP Arachis hypogaea
AT1G15215 Arabidopsis thaliana
AT3G18380 Arabidopsis thaliana
ATR0568G135 Amborella trichopoda
ATR0705G197 Amborella trichopoda
Atru.chr1.3516 Acer truncatum
Atru.chr2.2378 Acer truncatum
Atru.chr7.2061 Acer truncatum
AUR62009238 Chenopodium quinoa
AUR62019504 Chenopodium quinoa
AUR62022197 Chenopodium quinoa
AUR62031902 Chenopodium quinoa
AUR62036133 Chenopodium quinoa
AUR62036134 Chenopodium quinoa
AUR62041965 Chenopodium quinoa
BcaB04g20763 Brassica carinata
BcaB06g25884 Brassica carinata
BcaC05g25450 Brassica carinata
BcaC05g28633 Brassica carinata
BcaC09g48795 Brassica carinata
BolC1t04546H Brassica oleracea
BolC5t30071H Brassica oleracea
BolC5t33464H Brassica oleracea
BraA01t03678Z Brassica rapa
BraA05t21967Z Brassica rapa
BraA06t24301Z Brassica rapa
C01p45840 Brassica napus
C05p13340 Brassica napus
C05p47380 Brassica napus
CAN.G1119.16 Capsicum annuum
CAN.G1143.3 Capsicum annuum
CAN.G20.22 Capsicum annuum
CAN.G309.65 Capsicum annuum
CANSAT01G1609 Cannabis sativa
CANSAT01G1940 Cannabis sativa
CANSAT25G3521 Cannabis sativa
CANSAT35G1755 Cannabis sativa
CARHR015740 Cardamine hirsuta
CARHR093730 Cardamine hirsuta
Carub.0001s1497 Capsella rubella
Carub.0003s1816 Capsella rubella
Ca_15578_v3 Cicer arietinum L.
Ca_23253_v3 Cicer arietinum L.
Ca_24304_v3 Cicer arietinum L.
Ca_25142_v3 Cicer arietinum L.
CBR_g8466 Chara braunii
Cc04_g02640 Coffea canephora
Cc05_g11560 Coffea canephora
Cc08_g09850 Coffea canephora
CDE02G2913 Ceratophyllum demersum
CDE05G2145 Ceratophyllum demersum
CDE06G0377 Ceratophyllum demersum
CDE11G0534 Ceratophyllum demersum
Cfa013383 Carpinus fangiana
Ciclev10008640m.g Citrus clementina
Ciclev10009238m.g Citrus clementina
Ciclev10026320m.g Citrus clementina
CiPaw.01G232100 Carya illinoinensis
CiPaw.07G202400 Carya illinoinensis
CiPaw.11G166200 Carya illinoinensis
CiPaw.12G116600 Carya illinoinensis
ClCG05G009190 Citrullus lanatus
ClCG09G000140 Citrullus lanatus
ClCG11G015080 Citrullus lanatus
COL.COLO4_20993 Corchorus olitorius
COL.COLO4_30497 Corchorus olitorius
Cpa.g.sc109.7 Carica papaya
Cpa.g.sc109.8 Carica papaya
Cpa.g.sc80.14 Carica papaya
Cpa.g.sc80.15 Carica papaya
Cpa.g.sc80.16 Carica papaya
Cpa.g.sc829.5 Carica papaya
CsaV3_3G019600 Cucumis sativus L.
CsaV3_3G048480 Cucumis sativus L.
CsaV3_7G035340 Cucumis sativus L.
CSS0002928 Camellia sinensis var. sinensis
CSS0005726 Camellia sinensis var. sinensis
CSS0017563 Camellia sinensis var. sinensis
CSS0023026 Camellia sinensis var. sinensis
CSS0038520 Camellia sinensis var. sinensis
CSS0040689 Camellia sinensis var. sinensis
DCAR_000760 Daucus carota
DCAR_003074 Daucus carota
DCAR_013130 Daucus carota
DCAR_019581 Daucus carota
DCAR_019583 Daucus carota
DCAR_023078 Daucus carota
Dinv14951 Davidia involucrata
Dinv20218 Davidia involucrata
Dinv23386 Davidia involucrata
Dinv27919 Davidia involucrata
Dinv30443 Davidia involucrata
Dinv37983 Davidia involucrata
Duzib168G1566 Durio zibethinus
Duzib192G0362 Durio zibethinus
Duzib213G0605 Durio zibethinus
Duzib268G1455 Durio zibethinus
ECA233G4162 Erigeron canadensis
ECA234G4269 Erigeron canadensis
EL10Ac2g03988 Beta vulgaris
EL10Ac4g08278 Beta vulgaris
EL10Ac8g19616 Beta vulgaris
EL10Ac9g21216 Beta vulgaris
Eucgr.C02981 Eucalyptus grandis
Eucgr.F01181 Eucalyptus grandis
Eucgr.F03070 Eucalyptus grandis
FAN02G0574 Fragaria x ananassa
FAN05G5700 Fragaria x ananassa
FAN11G2345 Fragaria x ananassa
FAN14G5448 Fragaria x ananassa
FAN15G0337 Fragaria x ananassa
FAN16G1152 Fragaria x ananassa
FAN19G1996 Fragaria x ananassa
FAN19G2783 Fragaria x ananassa
FAN20G0144 Fragaria x ananassa
FAN21G1640 Fragaria x ananassa
FAN24G3313 Fragaria x ananassa
FAN25G2522 Fragaria x ananassa
FAN27G0387 Fragaria x ananassa
FvH4_1g07250 Fragaria vesca
FvH4_2g35340 Fragaria vesca
FvH4_3g19120 Fragaria vesca
FvH4_6g32282 Fragaria vesca
FvH4_6g32283 Fragaria vesca
Glyma.04G086200 Glycine max
Glyma.06G087700 Glycine max
Glyma.06G235200 Glycine max
Glyma.07G016000 Glycine max
Glyma.08G201500 Glycine max
Glyma.12G158000 Glycine max
Gohir.A01G060000 Gossypium hirsutum
Gohir.A05G045700 Gossypium hirsutum
Gohir.A06G091900 Gossypium hirsutum
Gohir.A10G066200 Gossypium hirsutum
Gohir.A13G147500 Gossypium hirsutum
Gohir.A13G186800 Gossypium hirsutum
Gohir.D01G046500 Gossypium hirsutum
Gohir.D05G047400 Gossypium hirsutum
Gohir.D06G074200 Gossypium hirsutum
Gohir.D06G091400 Gossypium hirsutum
Gohir.D07G128500 Gossypium hirsutum
Gohir.D10G067500 Gossypium hirsutum
Gohir.D13G152290 Gossypium hirsutum
Gohir.D13G193600 Gossypium hirsutum
Gorai.002G065900 Gossypium raimondii
Gorai.002G066000 Gossypium raimondii
Gorai.009G048700 Gossypium raimondii
Gorai.010G105400 Gossypium raimondii
Gorai.011G072000 Gossypium raimondii
Gorai.013G172000 Gossypium raimondii
Gorai.013G219600 Gossypium raimondii
GSVIVG01014258001 Vitis vinifera
GSVIVG01017001001 Vitis vinifera
GSVIVG01035290001 Vitis vinifera
HanXRQChr02g0050621 Helianthus annuus
HanXRQChr04g0095891 Helianthus annuus
HanXRQChr10g0302441 Helianthus annuus
HanXRQChr13g0402181 Helianthus annuus
Haze_09377 Corylus avellana
Haze_15839 Corylus avellana
Haze_21907 Corylus avellana
Hma1.2p1_0049F.1_g028400 Hydrangea macrophylla
Hma1.2p1_0154F.1_g068100 Hydrangea macrophylla
Hma1.2p1_0313F.1_g121610 Hydrangea macrophylla
Hma1.2p1_1056F.1_g252630 Hydrangea macrophylla
HPP92_003627 Vanilla planifolia
HPP92_009869 Vanilla planifolia
Hund03385 Selenicereus undatus
Hund06660 Selenicereus undatus
Hund22809 Selenicereus undatus
Lalb_Chr03g0030821 Lupinus albus
Lalb_Chr19g0134021 Lupinus albus
Lalb_Chr23g0269691 Lupinus albus
Lalb_Chr25g0280141 Lupinus albus
Lalb_Chr25g0286161 Lupinus albus
Lj1g0013429 Lotus japonicus
Lj3g0003713 Lotus japonicus
Lj3g0005400 Lotus japonicus
Lj3g0020932 Lotus japonicus
Lj3g0027617 Lotus japonicus
Lj5A54T62 Lonicera japonica
Lj6g0012782 Lotus japonicus
LjContig00155g0013817 Lotus japonicus
LjContig00155g0015542 Lotus japonicus
Lsat_1_v5_gn_1_37000 Lactuca sativa
Lsat_1_v5_gn_3_113441 Lactuca sativa
Lsat_1_v5_gn_5_128760 Lactuca sativa
Lsat_1_v5_gn_6_22781 Lactuca sativa
Manes.04G133600 Manihot esculenta
Manes.13G085400 Manihot esculenta
Manes.16G074000 Manihot esculenta
Mapoly0006s0154 Marchantia polymorpha
Mapoly0110s0048 Marchantia polymorpha
MBI01_g35401_MAGBIO Magnolia biondii
MBI04_g30809_MAGBIO Magnolia biondii
MBI07_g07333_MAGBIO Magnolia biondii
MBI09_g15191_MAGBIO Magnolia biondii
MBI09_g15193_MAGBIO Magnolia biondii
MD03G1236400 Malus domestica
MD08G1111600 Malus domestica
MD09G1204600 Malus domestica
MD11G1257200 Malus domestica
MD15G1091100 Malus domestica
MD17G1184800 Malus domestica
Medtr3g110260 Medicago truncatula
Medtr8g014075 Medicago truncatula
Medtr8g061040 Medicago truncatula
MELO3C003471.2 Cucumis melo
MELO3C019390.2 Cucumis melo
MELO3C024442.2 Cucumis melo
Migut.A00188 Erythranthe guttata
Migut.E01534 Erythranthe guttata
Migut.I00902 Erythranthe guttata
Migut.M00766 Erythranthe guttata
MSTRG.11691 Avicennia marina
MSTRG.12888 Avicennia marina
MSTRG.14027 Avicennia marina
MSTRG.22643 Avicennia marina
Nitab4.5_0000239g0070 Nicotiana tabacum
Nitab4.5_0000664g0140 Nicotiana tabacum
Nitab4.5_0001208g0100 Nicotiana tabacum
Nitab4.5_0001567g0210 Nicotiana tabacum
Nitab4.5_0001755g0130 Nicotiana tabacum
Nitab4.5_0005232g0050 Nicotiana tabacum
Nitab4.5_0006446g0020 Nicotiana tabacum
Nitab4.5_0009505g0010 Nicotiana tabacum
Nn1g09301 Nelumbo nucifera
Nn8g39093 Nelumbo nucifera
Oeu011282.1 Olea europaea
Oeu015264.2 Olea europaea
Oeu026793.1 Olea europaea
Oeu051096.2 Olea europaea
Oeu061323.1 Olea europaea
Os06g0483900 Oryza sativa ssp. japonica
Os06g0485100 Oryza sativa ssp. japonica
Os09g0346900 Oryza sativa ssp. japonica
Peaxi162Scf00027g00138 Petunia axillaris
Peaxi162Scf00038g00917 Petunia axillaris
Peaxi162Scf00247g00317 Petunia axillaris
Peaxi162Scf00699g00021 Petunia axillaris
PGR044G2336 Punica granatum
PGR083G0022 Punica granatum
PGR102G0547 Punica granatum
PGSC0003DMG400002529 Solanum tuberosum
PGSC0003DMG400030116 Solanum tuberosum
PGSC0003DMG401018559 Solanum tuberosum
PGSC0003DMG402018559 Solanum tuberosum
Phvul.009G111400 Phaseolus vulgaris
Phvul.010G145800 Phaseolus vulgaris
Phvul.011G158200 Phaseolus vulgaris
Potri.001G189200 Populus trichocarpa
Potri.001G373300 Populus trichocarpa
Potri.011G097500 Populus trichocarpa
Potri.018G046200 Populus trichocarpa
Pp3c20_17640 Physcomitrium patens
Prupe.1G445500 Prunus persica
Prupe.3G060300 Prunus persica
Prupe.4G172900 Prunus persica
Psat2g083920 Pisum sativum
Psat4g169440 Pisum sativum
Psat4g221120 Pisum sativum
Psat5g020320 Pisum sativum
PSO063G4821 Papaver somniferum
PSO151G0179 Papaver somniferum
PSO210G0763 Papaver somniferum
PSO210G3138 Papaver somniferum
PSO339G6325 Papaver somniferum
PSO339G6397 Papaver somniferum
PSO513G0172 Papaver somniferum
PSO782G4177 Papaver somniferum
QL01p024800 Quercus lobata
QL02p071875 Quercus lobata
QL05p020351 Quercus lobata
QL08p023274 Quercus lobata
QL12p041074 Quercus lobata
RcHm_v2.0_Chr2g0140241 Rosa chinensis
RcHm_v2.0_Chr4g0409031 Rosa chinensis
RcHm_v2.0_Chr5g0031921 Rosa chinensis
RcHm_v2.0_Chr6g0306581 Rosa chinensis
Rhsim02G0175800 Rhododendron simsii
Rhsim04G0023300 Rhododendron simsii
Rhsim06G0203700 Rhododendron simsii
Rhsim07G0145900 Rhododendron simsii
Rhsim08G0227000 Rhododendron simsii
Rhsim12G0202800 Rhododendron simsii
RhsimUnG0235600 Rhododendron simsii
Sabra01G0151900 Salix brachista
Sabra11G0090400 Salix brachista
Sabra11G0091600 Salix brachista
Sabra16G0245700 Salix brachista
Sabra18G0045200 Salix brachista
SalBow1G1479 Salvia bowleyana
SalBow2G1143 Salvia bowleyana
SalBow4G3128 Salvia bowleyana
SalBow7G4060 Salvia bowleyana
Sc06g0000850 Simmondsia chinensis
Sc12g0009740 Simmondsia chinensis
Sc16g0007350 Simmondsia chinensis
Sed0003169 Sechium edule
Sed0003694 Sechium edule
Sed0014113 Sechium edule
Sed0016073 Sechium edule
Sed0017488 Sechium edule
SEGI_10280 Sequoiadendron giganteum
SEGI_15585 Sequoiadendron giganteum
SEGI_20314 Sequoiadendron giganteum
SEGI_24913 Sequoiadendron giganteum
SEGI_34109 Sequoiadendron giganteum
SEGI_38066 Sequoiadendron giganteum
SGA_v2.0_scaffold169G38658 Striga asiatica
SGA_v2.0_scaffold66G22536 Striga asiatica
SGA_v2.0_scaffold70G23699 Striga asiatica
SGA_v2.0_scaffold73G24220 Striga asiatica
SGA_v2.0_scaffold88G27191 Striga asiatica
SHI21502 Sapria himalayana
SMO112G0042 Selaginella moellendorffii
SMO356G0114 Selaginella moellendorffii
Solyc08g066390.3 Solanum lycopersicum
Solyc10g007130.4 Solanum lycopersicum
Solyc11g070160.2 Solanum lycopersicum
Sopen03g039770 Solanum pennellii
Sopen08g020210 Solanum pennellii
Sopen10g003030 Solanum pennellii
Sopen11g028830 Solanum pennellii
Sp1g13530 Schrenkiella parvula
Sp3g16490 Schrenkiella parvula
TAR375G0357 Trochodendron aralioides
TAR624G0413 Trochodendron aralioides
TAR626G0213 Trochodendron aralioides
TAR629G0933 Trochodendron aralioides
THA.LOC104810452 Tarenaya hassleriana
THA.LOC104812527 Tarenaya hassleriana
THA.LOC104815564 Tarenaya hassleriana
Thecc.06G098600 Theobroma cacao
Thecc.07G100200 Theobroma cacao
Thecc.09G047300 Theobroma cacao
Thhalv10008534m.g Eutrema salsugineum
Thhalv10021077m.g Eutrema salsugineum
TPR.G15105 Trifolium pratense
TPR.G2460 Trifolium pratense
TPR.G28171 Trifolium pratense
TPR.G32251 Trifolium pratense
TPR.G565 Trifolium pratense
TWI18G1193 Tripterygium wilfordii
TWI34G0975 Tripterygium wilfordii
TWI38G0128 Tripterygium wilfordii
TWI39G0917 Tripterygium wilfordii
TWI63G0587 Tripterygium wilfordii
TWI75G1867 Tripterygium wilfordii
unitig_0.g2570 Utricularia gibba
unitig_21.g20063 Utricularia gibba
unitig_46.g18563 Utricularia gibba
vmacro05265 Vaccinium macrocarpon
vmacro09000 Vaccinium macrocarpon
vmacro09513 Vaccinium macrocarpon
vmacro11050 Vaccinium macrocarpon
vmacro11051 Vaccinium macrocarpon
vmacro11901 Vaccinium macrocarpon
vmacro16987 Vaccinium macrocarpon
vmacro17016 Vaccinium macrocarpon
vmacro17020 Vaccinium macrocarpon
vmacro18858 Vaccinium macrocarpon
VMungo0331G0337 Vigna mungo
VMungo1127G0489 Vigna mungo
Zm00001eb097990 Zea mays
Zm00001eb309600 Zea mays
Zm00001eb310530 Zea mays
Zm00001eb382270 Zea mays

User provided reference genes

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