Gene: AT3G18380

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G18380
  • Transcript Identifier AT3G18380.2
  • Gene Type Coding gene
  • Location Chr3 : 6311002-6313181 : negative

Gene Family Information

  • ID HOM05D001613
  • #Genes/#Species 400/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G18380.2
  • symbol SHH2
  • Alias DTF2,DNA-BINDING TRANSCRIPTION FACTOR 2
  • full_name SAWADEE homeodomain homolog 2
  • uniprot Q8RWJ7

Descriptions

  • Description DNA-BINDING TRANSCRIPTION FACTOR 2
  • Computational description sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 91 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
  • Computational description sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
Gene OntologyDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003682
IEA
Gene Ontologychromatin binding
GO:0003682
IEA
InterProchromatin binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039276 Protein SAWADEE HOMEODOMAIN HOMOLOG 1/2
IPR001356 Homeobox domain
IPR032001 SAWADEE domain
IPR009057 Homeobox-like domain superfamily
Mapman id Description
12.5.1.7 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RNA polymerase-IV-positioning factor (SHH)