Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p20060 Brassica napus
A03p13240 Brassica napus
A03p35240 Brassica napus
A05p40770 Brassica napus
A08p12980 Brassica napus
A10p14040 Brassica napus
A10p14550 Brassica napus
Aa31LG3G12520 Aethionema arabicum
Aa31LG5G17990 Aethionema arabicum
Aa31LG6G70 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3265 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4475 Anthoceros agrestis
Actinidia02135 Actinidia chinensis
Actinidia23363 Actinidia chinensis
Actinidia25280 Actinidia chinensis
Actinidia30022 Actinidia chinensis
Actinidia39751 Actinidia chinensis
Ah.01g002430 Amaranthus hybridus
Ah.01g002480 Amaranthus hybridus
Ah.01g014750 Amaranthus hybridus
Ah.08g218710 Amaranthus hybridus
AL239U10010 Arabidopsis lyrata
AL2G27280 Arabidopsis lyrata
AL2G30930 Arabidopsis lyrata
AL3G18720 Arabidopsis lyrata
AL7G37410 Arabidopsis lyrata
AL8G32490 Arabidopsis lyrata
Aqoxy206s002 Aquilegia oxysepala
Aqoxy3G02643 Aquilegia oxysepala
Aqoxy5G01840 Aquilegia oxysepala
Aqoxy5G03483 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.24DBAE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3DM8EN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4908EN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7ZG50Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9TNY53 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DUH36G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EPEJ84 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LVQ67B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N58NZT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TF6M8M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VDI6YU Arachis hypogaea
AT1G68420 Arabidopsis thaliana
AT1G70980 Arabidopsis thaliana
AT3G07420 Arabidopsis thaliana
AT4G17300 Arabidopsis thaliana
AT5G38750 Arabidopsis thaliana
AT5G56680 Arabidopsis thaliana
ATR0564G320 Amborella trichopoda
ATR0564G540 Amborella trichopoda
ATR0609G037 Amborella trichopoda
Atru.chr10.1120 Acer truncatum
Atru.chr12.300 Acer truncatum
Atru.chr12.337 Acer truncatum
Atru.chr6.1601 Acer truncatum
Atru.chr6.1602 Acer truncatum
Atru.chr6.1603 Acer truncatum
Atru.chr7.1517 Acer truncatum
AUR62001197 Chenopodium quinoa
AUR62007517 Chenopodium quinoa
AUR62007518 Chenopodium quinoa
AUR62022131 Chenopodium quinoa
AUR62031634 Chenopodium quinoa
AUR62038865 Chenopodium quinoa
AUR62042796 Chenopodium quinoa
AUR62044033 Chenopodium quinoa
BcaB01g04415 Brassica carinata
BcaB03g14703 Brassica carinata
BcaB03g16269 Brassica carinata
BcaB04g18409 Brassica carinata
BcaB08g36069 Brassica carinata
BcaB08g36074 Brassica carinata
BcaC01g04284 Brassica carinata
BcaC01g04286 Brassica carinata
BcaC01g06442 Brassica carinata
BcaC04g19994 Brassica carinata
BcaC04g20061 Brassica carinata
BcaC05g29534 Brassica carinata
BcaC07g38041 Brassica carinata
BcaC07g38044 Brassica carinata
BcaC09g50462 Brassica carinata
BcaNung00103 Brassica carinata
BolC1t02469H Brassica oleracea
BolC3t13989H Brassica oleracea
BolC3t16552H Brassica oleracea
BolC3t16554H Brassica oleracea
BolC5t34642H Brassica oleracea
BolC8t48447H Brassica oleracea
BolC9t57677H Brassica oleracea
BolC9t57750H Brassica oleracea
BraA01t01930Z Brassica rapa
BraA03t10636Z Brassica rapa
BraA03t12702Z Brassica rapa
BraA05t22808Z Brassica rapa
BraA08t33281Z Brassica rapa
BraA10t43495Z Brassica rapa
BraA10t43542Z Brassica rapa
C01p25200 Brassica napus
C03p15510 Brassica napus
C03p42840 Brassica napus
C03p42860 Brassica napus
C05p59880 Brassica napus
C09p48270 Brassica napus
C09p48990 Brassica napus
CAN.G128.65 Capsicum annuum
CAN.G1398.6 Capsicum annuum
CAN.G858.2 Capsicum annuum
CAN.G861.31 Capsicum annuum
CANSAT01G2555 Cannabis sativa
CANSAT01G2737 Cannabis sativa
CANSAT21G1584 Cannabis sativa
CANSAT56G3149 Cannabis sativa
CARHR000660 Cardamine hirsuta
CARHR082060 Cardamine hirsuta
CARHR223920 Cardamine hirsuta
CARHR270370 Cardamine hirsuta
Carub.0003s0696 Capsella rubella
Carub.0004s0660 Capsella rubella
Carub.0007s2410 Capsella rubella
Carub.0008s1715 Capsella rubella
Ca_17383_v3 Cicer arietinum L.
Ca_21967_v3 Cicer arietinum L.
Ca_23190_v3 Cicer arietinum L.
Ca_29442_v3 Cicer arietinum L.
CBR_g12968 Chara braunii
CBR_g16969 Chara braunii
Cc01_g16270 Coffea canephora
Cc06_g10910 Coffea canephora
Cc08_g12390 Coffea canephora
Cc08_g12400 Coffea canephora
CDE02G0631 Ceratophyllum demersum
CDE02G2296 Ceratophyllum demersum
CDE04G0341 Ceratophyllum demersum
CDE04G1076 Ceratophyllum demersum
CDE04G2234 Ceratophyllum demersum
CDE07G1974 Ceratophyllum demersum
CDE11G0048 Ceratophyllum demersum
Cfa003139 Carpinus fangiana
Cfa010334 Carpinus fangiana
Cfa012720 Carpinus fangiana
Cfa015859 Carpinus fangiana
Cfa024979 Carpinus fangiana
Ciclev10003532m.g Citrus clementina
Ciclev10003760m.g Citrus clementina
Ciclev10007872m.g Citrus clementina
Ciclev10019519m.g Citrus clementina
Ciclev10030394m.g Citrus clementina
Ciclev10030945m.g Citrus clementina
CiPaw.03G220200 Carya illinoinensis
CiPaw.11G079300 Carya illinoinensis
CiPaw.13G053900 Carya illinoinensis
CiPaw.13G054000 Carya illinoinensis
CiPaw.14G043000 Carya illinoinensis
ClCG03G016330 Citrullus lanatus
ClCG09G008450 Citrullus lanatus
ClCG10G002680 Citrullus lanatus
COL.COLO4_04505 Corchorus olitorius
COL.COLO4_18254 Corchorus olitorius
COL.COLO4_18255 Corchorus olitorius
COL.COLO4_30918 Corchorus olitorius
COL.COLO4_37172 Corchorus olitorius
Cpa.g.sc29.159 Carica papaya
Cpa.g.sc78.58 Carica papaya
Cpa.g.sc8.86 Carica papaya
Cre03.g193800 Chlamydomonas reinhardtii
CsaV3_1G039630 Cucumis sativus L.
CsaV3_3G002710 Cucumis sativus L.
CsaV3_7G026620 Cucumis sativus L.
CSS0004329 Camellia sinensis var. sinensis
CSS0020095 Camellia sinensis var. sinensis
CSS0034916 Camellia sinensis var. sinensis
CSS0035767 Camellia sinensis var. sinensis
CSS0036126 Camellia sinensis var. sinensis
CSS0047906 Camellia sinensis var. sinensis
CSS0049758 Camellia sinensis var. sinensis
DCAR_004765 Daucus carota
DCAR_008493 Daucus carota
DCAR_010685 Daucus carota
Dinv12802 Davidia involucrata
Dinv18556 Davidia involucrata
Dinv28818 Davidia involucrata
Dinv36728 Davidia involucrata
Dinv39148 Davidia involucrata
Dinv42285 Davidia involucrata
Duzib136G0002 Durio zibethinus
Duzib138G1042 Durio zibethinus
Duzib150G0351 Durio zibethinus
Duzib168G0161 Durio zibethinus
Duzib187G1049 Durio zibethinus
Duzib205G1000 Durio zibethinus
Duzib211G0457 Durio zibethinus
ECA238G1281 Erigeron canadensis
ECA240G0176 Erigeron canadensis
ECA240G1278 Erigeron canadensis
ECA248G0673 Erigeron canadensis
EL10Ac3g05935 Beta vulgaris
EL10Ac7g17985 Beta vulgaris
EL10Ac9g22659 Beta vulgaris
Eucgr.C00933 Eucalyptus grandis
Eucgr.D02080 Eucalyptus grandis
Eucgr.H00731 Eucalyptus grandis
FAN11G0240 Fragaria x ananassa
FAN15G1547 Fragaria x ananassa
FAN15G2194 Fragaria x ananassa
FAN16G2390 Fragaria x ananassa
FAN17G1474 Fragaria x ananassa
FAN19G2852 Fragaria x ananassa
FAN21G3178 Fragaria x ananassa
FAN24G3292 Fragaria x ananassa
FAN25G3143 Fragaria x ananassa
FAN26G2432 Fragaria x ananassa
FAN27G2852 Fragaria x ananassa
FAN28G1286 Fragaria x ananassa
FvH4_1g25310 Fragaria vesca
FvH4_2g17960 Fragaria vesca
FvH4_3g17430 Fragaria vesca
Glyma.03G089300 Glycine max
Glyma.05G059500 Glycine max
Glyma.05G224000 Glycine max
Glyma.08G031100 Glycine max
Glyma.16G083800 Glycine max
Glyma.17G142000 Glycine max
Gohir.A05G210740 Gossypium hirsutum
Gohir.A05G210760 Gossypium hirsutum
Gohir.A05G210780 Gossypium hirsutum
Gohir.A06G046750 Gossypium hirsutum
Gohir.A06G070200 Gossypium hirsutum
Gohir.A07G090600 Gossypium hirsutum
Gohir.A07G197066 Gossypium hirsutum
Gohir.A08G244350 Gossypium hirsutum
Gohir.A09G196200 Gossypium hirsutum
Gohir.A11G141700 Gossypium hirsutum
Gohir.A11G230302 Gossypium hirsutum
Gohir.D03G044950 Gossypium hirsutum
Gohir.D04G058750 Gossypium hirsutum
Gohir.D05G323525 Gossypium hirsutum
Gohir.D06G068800 Gossypium hirsutum
Gohir.D07G095300 Gossypium hirsutum
Gohir.D08G024601 Gossypium hirsutum
Gohir.D08G265250 Gossypium hirsutum
Gohir.D09G127750 Gossypium hirsutum
Gohir.D09G190800 Gossypium hirsutum
Gohir.D11G148000 Gossypium hirsutum
Gohir.D12G032850 Gossypium hirsutum
Gohir.D13G190966 Gossypium hirsutum
Gorai.001G102600 Gossypium raimondii
Gorai.001G229000 Gossypium raimondii
Gorai.004G283200 Gossypium raimondii
Gorai.006G213600 Gossypium raimondii
Gorai.007G158700 Gossypium raimondii
Gorai.010G080400 Gossypium raimondii
GSVIVG01004706001 Vitis vinifera
GSVIVG01005287001 Vitis vinifera
GSVIVG01006160001 Vitis vinifera
GSVIVG01013293001 Vitis vinifera
GSVIVG01013821001 Vitis vinifera
GSVIVG01015254001 Vitis vinifera
GSVIVG01023072001 Vitis vinifera
GSVIVG01036115001 Vitis vinifera
HanXRQChr01g0007201 Helianthus annuus
HanXRQChr01g0030431 Helianthus annuus
HanXRQChr01g0030441 Helianthus annuus
HanXRQChr02g0044331 Helianthus annuus
HanXRQChr03g0087741 Helianthus annuus
HanXRQChr09g0272701 Helianthus annuus
HanXRQChr10g0302421 Helianthus annuus
Haze_03309 Corylus avellana
Haze_07912 Corylus avellana
Haze_25863 Corylus avellana
Hma1.2p1_0098F.1_g048310 Hydrangea macrophylla
Hma1.2p1_0405F.1_g145890 Hydrangea macrophylla
Hma1.2p1_0663F.1_g198630 Hydrangea macrophylla
Hma1.2p1_0663F.1_g198640 Hydrangea macrophylla
Hma1.2p1_0781F.1_g216870 Hydrangea macrophylla
Hma1.2p1_0982F.1_g243950 Hydrangea macrophylla
Hma1.2p1_1074F.1_g254420 Hydrangea macrophylla
Hma1.2p1_1172F.1_g263620 Hydrangea macrophylla
HPP92_009933 Vanilla planifolia
HPP92_014487 Vanilla planifolia
HPP92_014488 Vanilla planifolia
HPP92_017206 Vanilla planifolia
Hund05600 Selenicereus undatus
Hund14538 Selenicereus undatus
Hund18486 Selenicereus undatus
Lalb_Chr09g0330101 Lupinus albus
Lalb_Chr13g0291011 Lupinus albus
Lalb_Chr22g0349811 Lupinus albus
Lj2A1118T68 Lonicera japonica
Lj2C218G3 Lonicera japonica
Lj3g0000697 Lotus japonicus
Lj3g0000727 Lotus japonicus
Lj4g0012236 Lotus japonicus
Lj4g0018864 Lotus japonicus
Lj7A670G56 Lonicera japonica
Lsat_1_v5_gn_2_85561 Lactuca sativa
Lsat_1_v5_gn_5_178460 Lactuca sativa
Lsat_1_v5_gn_6_106580 Lactuca sativa
Lsat_1_v5_gn_6_90981 Lactuca sativa
Manes.01G080800 Manihot esculenta
Manes.03G030200 Manihot esculenta
Manes.12G052400 Manihot esculenta
Manes.13G053400 Manihot esculenta
Mapoly0043s0090 Marchantia polymorpha
Mapoly0056s0024 Marchantia polymorpha
MBI01_g14455_MAGBIO Magnolia biondii
MBI04_g09502_MAGBIO Magnolia biondii
MBI04_g46437_MAGBIO Magnolia biondii
MBI07_g21332_MAGBIO Magnolia biondii
MBI13_g35418_MAGBIO Magnolia biondii
MCO02G171 Micromonas commoda
MCO16G231 Micromonas commoda
MD01G1115900 Malus domestica
MD03G1251800 Malus domestica
MD05G1158600 Malus domestica
MD05G1163500 Malus domestica
MD06G1059300 Malus domestica
MD10G1153300 Malus domestica
MD11G1273000 Malus domestica
Medtr4g100920 Medicago truncatula
Medtr7g101050 Medicago truncatula
Medtr8g011530 Medicago truncatula
Medtr8g102050 Medicago truncatula
MELO3C013939.2 Cucumis melo
MELO3C015385.2 Cucumis melo
MELO3C021113.2 Cucumis melo
Migut.A00956 Erythranthe guttata
Migut.D02469 Erythranthe guttata
Migut.J00435 Erythranthe guttata
MSTRG.18811 Avicennia marina
MSTRG.25522 Avicennia marina
MSTRG.6035 Avicennia marina
Nitab4.5_0000001g0370 Nicotiana tabacum
Nitab4.5_0000038g0050 Nicotiana tabacum
Nitab4.5_0001093g0080 Nicotiana tabacum
Nitab4.5_0001495g0030 Nicotiana tabacum
Nitab4.5_0002445g0030 Nicotiana tabacum
Nitab4.5_0007717g0040 Nicotiana tabacum
Nitab4.5_0010147g0010 Nicotiana tabacum
Nitab4.5_0010347g0010 Nicotiana tabacum
Nn1g06240 Nelumbo nucifera
Nn1g06241 Nelumbo nucifera
Nn1g08070 Nelumbo nucifera
Nn5g28583 Nelumbo nucifera
Nn6g33956 Nelumbo nucifera
Nn8g38968 Nelumbo nucifera
Oeu000333.1 Olea europaea
Oeu002335.1 Olea europaea
Oeu021466.2 Olea europaea
Oeu040200.1 Olea europaea
Oeu040201.1 Olea europaea
Oeu057846.1 Olea europaea
Os01g0372700 Oryza sativa ssp. japonica
Os07g0485400 Oryza sativa ssp. japonica
Os12g0414500 Oryza sativa ssp. japonica
Peaxi162Scf00054g00197 Petunia axillaris
Peaxi162Scf00076g00920 Petunia axillaris
Peaxi162Scf00171g00129 Petunia axillaris
Peaxi162Scf00249g00062 Petunia axillaris
Peaxi162Scf00761g00051 Petunia axillaris
PGR031G3009 Punica granatum
PGR083G1253 Punica granatum
PGR087G0003 Punica granatum
PGR102G2619 Punica granatum
PGR142G2819 Punica granatum
PGSC0003DMG400015215 Solanum tuberosum
PGSC0003DMG400022055 Solanum tuberosum
PGSC0003DMG400023661 Solanum tuberosum
Phvul.002G305800 Phaseolus vulgaris
Phvul.003G220700 Phaseolus vulgaris
Phvul.010G030800 Phaseolus vulgaris
Potri.002G249700 Populus trichocarpa
Potri.006G153900 Populus trichocarpa
Potri.007G129800 Populus trichocarpa
Potri.017G028800 Populus trichocarpa
Potri.018G070000 Populus trichocarpa
Pp3c12_7710 Physcomitrium patens
Pp3c12_7760 Physcomitrium patens
Pp3c1_35170 Physcomitrium patens
Pp3c4_19930 Physcomitrium patens
PRCOL_00000766 Prasinoderma coloniale
PRCOL_00005888 Prasinoderma coloniale
Prupe.4G154500 Prunus persica
Prupe.5G070100 Prunus persica
Prupe.7G068600 Prunus persica
Prupe.8G192100 Prunus persica
Psat0s4060g0160 Pisum sativum
Psat4g072280 Pisum sativum
Psat7g018640 Pisum sativum
PSO017G6102 Papaver somniferum
PSO063G3523 Papaver somniferum
PSO063G4989 Papaver somniferum
PSO339G5537 Papaver somniferum
PSO384G2227 Papaver somniferum
PSO386G0259 Papaver somniferum
PSO675G2310 Papaver somniferum
PSO832G0327 Papaver somniferum
QL02p064866 Quercus lobata
QL07p040810 Quercus lobata
QL09p045845 Quercus lobata
QL12p012099 Quercus lobata
QL12p012112 Quercus lobata
RcHm_v2.0_Chr2g0123321 Rosa chinensis
RcHm_v2.0_Chr5g0028961 Rosa chinensis
RcHm_v2.0_Chr6g0283201 Rosa chinensis
RcHm_v2.0_Chr7g0228441 Rosa chinensis
Rhsim05G0030300 Rhododendron simsii
Rhsim05G0030500 Rhododendron simsii
Rhsim05G0030800 Rhododendron simsii
Rhsim05G0031100 Rhododendron simsii
Rhsim06G0183900 Rhododendron simsii
Rhsim13G0052000 Rhododendron simsii
Sabra02G0190200 Salix brachista
Sabra06G0122100 Salix brachista
Sabra07G0105700 Salix brachista
Sabra17G0017400 Salix brachista
Sabra18G0061300 Salix brachista
SalBow6G0445 Salvia bowleyana
SalBow6G0463 Salvia bowleyana
SalBow6G1251 Salvia bowleyana
Sc01g0008430 Simmondsia chinensis
Sc08g0008220 Simmondsia chinensis
Sc17g0001800 Simmondsia chinensis
Sed0005108 Sechium edule
Sed0006747 Sechium edule
Sed0018812 Sechium edule
Sed0023162 Sechium edule
SEGI_12064 Sequoiadendron giganteum
SGA_v2.0_scaffold144G35946 Striga asiatica
SGA_v2.0_scaffold170G38769 Striga asiatica
SGA_v2.0_scaffold62G21572 Striga asiatica
SGA_v2.0_scaffold7G04024 Striga asiatica
SMO116G0372 Selaginella moellendorffii
SMO165G0027 Selaginella moellendorffii
Solyc03g019940.4 Solanum lycopersicum
Solyc09g057950.3 Solanum lycopersicum
Solyc10g080710.2 Solanum lycopersicum
Sopen03g029680 Solanum pennellii
Sopen09g020120 Solanum pennellii
Sopen10g031250 Solanum pennellii
Sp3g06340 Schrenkiella parvula
Sp6g18450 Schrenkiella parvula
Sp7g16870 Schrenkiella parvula
TAR624G0867 Trochodendron aralioides
TAR626G0430 Trochodendron aralioides
TAR633G0582 Trochodendron aralioides
TAR636G2634 Trochodendron aralioides
TAR636G3225 Trochodendron aralioides
THA.LOC104809571 Tarenaya hassleriana
THA.LOC104811732 Tarenaya hassleriana
THA.LOC104813487 Tarenaya hassleriana
THA.LOC104822528 Tarenaya hassleriana
Thecc.01G212500 Theobroma cacao
Thecc.03G250800 Theobroma cacao
Thecc.09G095000 Theobroma cacao
Thhalv10000517m.g Eutrema salsugineum
Thhalv10013096m.g Eutrema salsugineum
Thhalv10020277m.g Eutrema salsugineum
Thhalv10024799m.g Eutrema salsugineum
TPR.G2045 Trifolium pratense
TPR.G25444 Trifolium pratense
TPR.G37633 Trifolium pratense
TWI32G0576 Tripterygium wilfordii
TWI36G0799 Tripterygium wilfordii
TWI60G0922 Tripterygium wilfordii
TWI63G1460 Tripterygium wilfordii
TWI75G0503 Tripterygium wilfordii
TWI81G0455 Tripterygium wilfordii
unitig_22.g5224 Utricularia gibba
unitig_61.g26184 Utricularia gibba
unitig_8.g3697 Utricularia gibba
unitig_899.g15394 Utricularia gibba
vmacro02810 Vaccinium macrocarpon
vmacro07309 Vaccinium macrocarpon
vmacro12026 Vaccinium macrocarpon
VMungo0251G0807 Vigna mungo
VMungo0251G2154 Vigna mungo
VMungo0331G0097 Vigna mungo
VMungo0720G1214 Vigna mungo
Zm00001eb105060 Zea mays
Zm00001eb120130 Zea mays
Zm00001eb321560 Zea mays
Zm00001eb341390 Zea mays
Zm00001eb428260 Zea mays

User provided reference genes

Program Settings