Gene: AT4G17300

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G17300
  • Transcript Identifier AT4G17300.2
  • Gene Type Coding gene
  • Location Chr4 : 9681498-9684833 : positive

Gene Family Information

  • ID HOM05D001300
  • #Genes/#Species 483/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G17300.2
  • symbol NS1
  • uniprot O48593

Descriptions

  • Description Class II aminoacyl-tRNA and biotin synthetases superfamily protein
  • Computational description NS1; FUNCTIONS IN: asparagine-tRNA ligase activity; INVOLVED IN: asparaginyl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT1G70980.1); Has 19374 Blast hits to 17086 proteins in 2835 species: Archae - 447; Bacteria - 14373; Metazoa - 505; Fungi - 670; Plants - 294; Viruses - 0; Other Eukaryotes - 3085 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006418
IEA
GOA DatabasetRNA aminoacylation for protein translation
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0006412
IEA
GOA Databasetranslation
GO:0006421
ISS, IBA
IEA
Gene Ontologyasparaginyl-tRNA aminoacylation1 2
GO:0006421
IEA
InterProasparaginyl-tRNA aminoacylation
GO:0048481
IMP
Gene Ontologyplant ovule development3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016874
IEA
GOA Databaseligase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0004812
IEA
GOA Databaseaminoacyl-tRNA ligase activity
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004816
ISS, IBA
IEA
Gene Ontologyasparagine-tRNA ligase activity1 2
GO:0004816
IEA
InterProasparagine-tRNA ligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma4
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast5 6
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA
ISS, IBA
Gene Ontologymitochondrion1 2 5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR004522 Asparagine-tRNA ligase
IPR012340 Nucleic acid-binding, OB-fold
IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N)
Mapman id Description
17.2.3 Protein biosynthesis.aminoacyl-tRNA synthetase activities.asparagine-tRNA ligase