Gene: AT5G56680

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G56680
  • Transcript Identifier AT5G56680.1
  • Gene Type Coding gene
  • Location Chr5 : 22936645-22938841 : positive

Gene Family Information

  • ID HOM05D001300
  • #Genes/#Species 483/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G56680.1
  • symbol SYNC1
  • uniprot Q9SW96

Descriptions

  • Description Class II aminoacyl-tRNA and biotin synthetases superfamily protein
  • Computational description SYNC1; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: cotyledon, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT1G70980.1); Has 19343 Blast hits to 13725 proteins in 2674 species: Archae - 682; Bacteria - 14860; Metazoa - 615; Fungi - 765; Plants - 223; Viruses - 0; Other Eukaryotes - 2198 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
GOA Databasetranslation
GO:0006418
IEA
GOA DatabasetRNA aminoacylation for protein translation
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0006421
IBA
IEA
Gene Ontologyasparaginyl-tRNA aminoacylation1
GO:0006421
IEA
InterProasparaginyl-tRNA aminoacylation
GO:0046686
IEP
GOA Databaseresponse to cadmium ion
GO:0009793
IMP
NAS
Gene Ontologyembryo development ending in seed dormancy2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004812
IEA
GOA Databaseaminoacyl-tRNA ligase activity
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004816
IBA
IEA
Gene Ontologyasparagine-tRNA ligase activity1
GO:0004816
IEA
InterProasparagine-tRNA ligase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0016874
IEA
GOA Databaseligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005829
IDA
IEA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol3
GO:0005739
IDA
IBA
Gene Ontologymitochondrion1 4
GO:0009536
HDA
Gene Ontologyplastid5
GO:0009507
IDA
Gene Ontologychloroplast4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012340 Nucleic acid-binding, OB-fold
IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR004522 Asparagine-tRNA ligase
IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N)
IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR000738 WHEP-TRS domain
Mapman id Description
17.2.3 Protein biosynthesis.aminoacyl-tRNA synthetase activities.asparagine-tRNA ligase