Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001300', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '483', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p20060' => 'bna', 'A03p13240' => 'bna', 'A03p35240' => 'bna', 'A05p40770' => 'bna', 'A08p12980' => 'bna', 'A10p14040' => 'bna', 'A10p14550' => 'bna', 'Aa31LG3G12520' => 'aar', 'Aa31LG5G17990' => 'aar', 'Aa31LG6G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3265' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4475' => 'aag', 'Actinidia02135' => 'ach', 'Actinidia23363' => 'ach', 'Actinidia25280' => 'ach', 'Actinidia30022' => 'ach', 'Actinidia39751' => 'ach', 'Ah.01g002430' => 'amhyb', 'Ah.01g002480' => 'amhyb', 'Ah.01g014750' => 'amhyb', 'Ah.08g218710' => 'amhyb', 'AL239U10010' => 'aly', 'AL2G27280' => 'aly', 'AL2G30930' => 'aly', 'AL3G18720' => 'aly', 'AL7G37410' => 'aly', 'AL8G32490' => 'aly', 'Aqoxy206s002' => 'aox', 'Aqoxy3G02643' => 'aox', 'Aqoxy5G01840' => 'aox', 'Aqoxy5G03483' => 'aox', 'arahy.Tifrunner.gnm1.ann1.24DBAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DM8EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4908EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZG50Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNY53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUH36G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPEJ84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVQ67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N58NZT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF6M8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI6YU' => 'arhy', 'AT1G68420' => 'ath', 'AT1G70980' => 'ath', 'AT3G07420' => 'ath', 'AT4G17300' => 'ath', 'AT5G38750' => 'ath', 'AT5G56680' => 'ath', 'ATR0564G320' => 'atr', 'ATR0564G540' => 'atr', 'ATR0609G037' => 'atr', 'Atru.chr10.1120' => 'acertr', 'Atru.chr12.300' => 'acertr', 'Atru.chr12.337' => 'acertr', 'Atru.chr6.1601' => 'acertr', 'Atru.chr6.1602' => 'acertr', 'Atru.chr6.1603' => 'acertr', 'Atru.chr7.1517' => 'acertr', 'AUR62001197' => 'cqu', 'AUR62007517' => 'cqu', 'AUR62007518' => 'cqu', 'AUR62022131' => 'cqu', 'AUR62031634' => 'cqu', 'AUR62038865' => 'cqu', 'AUR62042796' => 'cqu', 'AUR62044033' => 'cqu', 'BcaB01g04415' => 'bca', 'BcaB03g14703' => 'bca', 'BcaB03g16269' => 'bca', 'BcaB04g18409' => 'bca', 'BcaB08g36069' => 'bca', 'BcaB08g36074' => 'bca', 'BcaC01g04284' => 'bca', 'BcaC01g04286' => 'bca', 'BcaC01g06442' => 'bca', 'BcaC04g19994' => 'bca', 'BcaC04g20061' => 'bca', 'BcaC05g29534' => 'bca', 'BcaC07g38041' => 'bca', 'BcaC07g38044' => 'bca', 'BcaC09g50462' => 'bca', 'BcaNung00103' => 'bca', 'BolC1t02469H' => 'bol', 'BolC3t13989H' => 'bol', 'BolC3t16552H' => 'bol', 'BolC3t16554H' => 'bol', 'BolC5t34642H' => 'bol', 'BolC8t48447H' => 'bol', 'BolC9t57677H' => 'bol', 'BolC9t57750H' => 'bol', 'BraA01t01930Z' => 'bra', 'BraA03t10636Z' => 'bra', 'BraA03t12702Z' => 'bra', 'BraA05t22808Z' => 'bra', 'BraA08t33281Z' => 'bra', 'BraA10t43495Z' => 'bra', 'BraA10t43542Z' => 'bra', 'C01p25200' => 'bna', 'C03p15510' => 'bna', 'C03p42840' => 'bna', 'C03p42860' => 'bna', 'C05p59880' => 'bna', 'C09p48270' => 'bna', 'C09p48990' => 'bna', 'CAN.G128.65' => 'can', 'CAN.G1398.6' => 'can', 'CAN.G858.2' => 'can', 'CAN.G861.31' => 'can', 'CANSAT01G2555' => 'cansat', 'CANSAT01G2737' => 'cansat', 'CANSAT21G1584' => 'cansat', 'CANSAT56G3149' => 'cansat', 'CARHR000660' => 'chi', 'CARHR082060' => 'chi', 'CARHR223920' => 'chi', 'CARHR270370' => 'chi', 'Carub.0003s0696' => 'cru', 'Carub.0004s0660' => 'cru', 'Carub.0007s2410' => 'cru', 'Carub.0008s1715' => 'cru', 'Ca_17383_v3' => 'car', 'Ca_21967_v3' => 'car', 'Ca_23190_v3' => 'car', 'Ca_29442_v3' => 'car', 'CBR_g12968' => 'cbr', 'CBR_g16969' => 'cbr', 'Cc01_g16270' => 'ccan', 'Cc06_g10910' => 'ccan', 'Cc08_g12390' => 'ccan', 'Cc08_g12400' => 'ccan', 'CDE02G0631' => 'cde', 'CDE02G2296' => 'cde', 'CDE04G0341' => 'cde', 'CDE04G1076' => 'cde', 'CDE04G2234' => 'cde', 'CDE07G1974' => 'cde', 'CDE11G0048' => 'cde', 'Cfa003139' => 'cfa', 'Cfa010334' => 'cfa', 'Cfa012720' => 'cfa', 'Cfa015859' => 'cfa', 'Cfa024979' => 'cfa', 'Ciclev10003532m.g' => 'ccl', 'Ciclev10003760m.g' => 'ccl', 'Ciclev10007872m.g' => 'ccl', 'Ciclev10019519m.g' => 'ccl', 'Ciclev10030394m.g' => 'ccl', 'Ciclev10030945m.g' => 'ccl', 'CiPaw.03G220200' => 'cil', 'CiPaw.11G079300' => 'cil', 'CiPaw.13G053900' => 'cil', 'CiPaw.13G054000' => 'cil', 'CiPaw.14G043000' => 'cil', 'ClCG03G016330' => 'cla', 'ClCG09G008450' => 'cla', 'ClCG10G002680' => 'cla', 'COL.COLO4_04505' => 'col', 'COL.COLO4_18254' => 'col', 'COL.COLO4_18255' => 'col', 'COL.COLO4_30918' => 'col', 'COL.COLO4_37172' => 'col', 'Cpa.g.sc29.159' => 'cpa', 'Cpa.g.sc78.58' => 'cpa', 'Cpa.g.sc8.86' => 'cpa', 'Cre03.g193800' => 'cre', 'CsaV3_1G039630' => 'csa', 'CsaV3_3G002710' => 'csa', 'CsaV3_7G026620' => 'csa', 'CSS0004329' => 'camsi', 'CSS0020095' => 'camsi', 'CSS0034916' => 'camsi', 'CSS0035767' => 'camsi', 'CSS0036126' => 'camsi', 'CSS0047906' => 'camsi', 'CSS0049758' => 'camsi', 'DCAR_004765' => 'dca', 'DCAR_008493' => 'dca', 'DCAR_010685' => 'dca', 'Dinv12802' => 'din', 'Dinv18556' => 'din', 'Dinv28818' => 'din', 'Dinv36728' => 'din', 'Dinv39148' => 'din', 'Dinv42285' => 'din', 'Duzib136G0002' => 'dzi', 'Duzib138G1042' => 'dzi', 'Duzib150G0351' => 'dzi', 'Duzib168G0161' => 'dzi', 'Duzib187G1049' => 'dzi', 'Duzib205G1000' => 'dzi', 'Duzib211G0457' => 'dzi', 'ECA238G1281' => 'eca', 'ECA240G0176' => 'eca', 'ECA240G1278' => 'eca', 'ECA248G0673' => 'eca', 'EL10Ac3g05935' => 'bvu', 'EL10Ac7g17985' => 'bvu', 'EL10Ac9g22659' => 'bvu', 'Eucgr.C00933' => 'egr', 'Eucgr.D02080' => 'egr', 'Eucgr.H00731' => 'egr', 'FAN11G0240' => 'fan', 'FAN15G1547' => 'fan', 'FAN15G2194' => 'fan', 'FAN16G2390' => 'fan', 'FAN17G1474' => 'fan', 'FAN19G2852' => 'fan', 'FAN21G3178' => 'fan', 'FAN24G3292' => 'fan', 'FAN25G3143' => 'fan', 'FAN26G2432' => 'fan', 'FAN27G2852' => 'fan', 'FAN28G1286' => 'fan', 'FvH4_1g25310' => 'fve', 'FvH4_2g17960' => 'fve', 'FvH4_3g17430' => 'fve', 'Glyma.03G089300' => 'gma', 'Glyma.05G059500' => 'gma', 'Glyma.05G224000' => 'gma', 'Glyma.08G031100' => 'gma', 'Glyma.16G083800' => 'gma', 'Glyma.17G142000' => 'gma', 'Gohir.A05G210740' => 'ghi', 'Gohir.A05G210760' => 'ghi', 'Gohir.A05G210780' => 'ghi', 'Gohir.A06G046750' => 'ghi', 'Gohir.A06G070200' => 'ghi', 'Gohir.A07G090600' => 'ghi', 'Gohir.A07G197066' => 'ghi', 'Gohir.A08G244350' => 'ghi', 'Gohir.A09G196200' => 'ghi', 'Gohir.A11G141700' => 'ghi', 'Gohir.A11G230302' => 'ghi', 'Gohir.D03G044950' => 'ghi', 'Gohir.D04G058750' => 'ghi', 'Gohir.D05G323525' => 'ghi', 'Gohir.D06G068800' => 'ghi', 'Gohir.D07G095300' => 'ghi', 'Gohir.D08G024601' => 'ghi', 'Gohir.D08G265250' => 'ghi', 'Gohir.D09G127750' => 'ghi', 'Gohir.D09G190800' => 'ghi', 'Gohir.D11G148000' => 'ghi', 'Gohir.D12G032850' => 'ghi', 'Gohir.D13G190966' => 'ghi', 'Gorai.001G102600' => 'gra', 'Gorai.001G229000' => 'gra', 'Gorai.004G283200' => 'gra', 'Gorai.006G213600' => 'gra', 'Gorai.007G158700' => 'gra', 'Gorai.010G080400' => 'gra', 'GSVIVG01004706001' => 'vvi', 'GSVIVG01005287001' => 'vvi', 'GSVIVG01006160001' => 'vvi', 'GSVIVG01013293001' => 'vvi', 'GSVIVG01013821001' => 'vvi', 'GSVIVG01015254001' => 'vvi', 'GSVIVG01023072001' => 'vvi', 'GSVIVG01036115001' => 'vvi', 'HanXRQChr01g0007201' => 'han', 'HanXRQChr01g0030431' => 'han', 'HanXRQChr01g0030441' => 'han', 'HanXRQChr02g0044331' => 'han', 'HanXRQChr03g0087741' => 'han', 'HanXRQChr09g0272701' => 'han', 'HanXRQChr10g0302421' => 'han', 'Haze_03309' => 'cav', 'Haze_07912' => 'cav', 'Haze_25863' => 'cav', 'Hma1.2p1_0098F.1_g048310' => 'hma', 'Hma1.2p1_0405F.1_g145890' => 'hma', 'Hma1.2p1_0663F.1_g198630' => 'hma', 'Hma1.2p1_0663F.1_g198640' => 'hma', 'Hma1.2p1_0781F.1_g216870' => 'hma', 'Hma1.2p1_0982F.1_g243950' => 'hma', 'Hma1.2p1_1074F.1_g254420' => 'hma', 'Hma1.2p1_1172F.1_g263620' => 'hma', 'HPP92_009933' => 'vpl', 'HPP92_014487' => 'vpl', 'HPP92_014488' => 'vpl', 'HPP92_017206' => 'vpl', 'Hund05600' => 'sun', 'Hund14538' => 'sun', 'Hund18486' => 'sun', 'Lalb_Chr09g0330101' => 'lal', 'Lalb_Chr13g0291011' => 'lal', 'Lalb_Chr22g0349811' => 'lal', 'Lj2A1118T68' => 'lonja', 'Lj2C218G3' => 'lonja', 'Lj3g0000697' => 'lja', 'Lj3g0000727' => 'lja', 'Lj4g0012236' => 'lja', 'Lj4g0018864' => 'lja', 'Lj7A670G56' => 'lonja', 'Lsat_1_v5_gn_2_85561' => 'lsa', 'Lsat_1_v5_gn_5_178460' => 'lsa', 'Lsat_1_v5_gn_6_106580' => 'lsa', 'Lsat_1_v5_gn_6_90981' => 'lsa', 'Manes.01G080800' => 'mes', 'Manes.03G030200' => 'mes', 'Manes.12G052400' => 'mes', 'Manes.13G053400' => 'mes', 'Mapoly0043s0090' => 'mpo', 'Mapoly0056s0024' => 'mpo', 'MBI01_g14455_MAGBIO' => 'mbi', 'MBI04_g09502_MAGBIO' => 'mbi', 'MBI04_g46437_MAGBIO' => 'mbi', 'MBI07_g21332_MAGBIO' => 'mbi', 'MBI13_g35418_MAGBIO' => 'mbi', 'MCO02G171' => 'mco', 'MCO16G231' => 'mco', 'MD01G1115900' => 'mdo', 'MD03G1251800' => 'mdo', 'MD05G1158600' => 'mdo', 'MD05G1163500' => 'mdo', 'MD06G1059300' => 'mdo', 'MD10G1153300' => 'mdo', 'MD11G1273000' => 'mdo', 'Medtr4g100920' => 'mtr', 'Medtr7g101050' => 'mtr', 'Medtr8g011530' => 'mtr', 'Medtr8g102050' => 'mtr', 'MELO3C013939.2' => 'cme', 'MELO3C015385.2' => 'cme', 'MELO3C021113.2' => 'cme', 'Migut.A00956' => 'egut', 'Migut.D02469' => 'egut', 'Migut.J00435' => 'egut', 'MSTRG.18811' => 'ama', 'MSTRG.25522' => 'ama', 'MSTRG.6035' => 'ama', 'Nitab4.5_0000001g0370' => 'nta', 'Nitab4.5_0000038g0050' => 'nta', 'Nitab4.5_0001093g0080' => 'nta', 'Nitab4.5_0001495g0030' => 'nta', 'Nitab4.5_0002445g0030' => 'nta', 'Nitab4.5_0007717g0040' => 'nta', 'Nitab4.5_0010147g0010' => 'nta', 'Nitab4.5_0010347g0010' => 'nta', 'Nn1g06240' => 'nnu', 'Nn1g06241' => 'nnu', 'Nn1g08070' => 'nnu', 'Nn5g28583' => 'nnu', 'Nn6g33956' => 'nnu', 'Nn8g38968' => 'nnu', 'Oeu000333.1' => 'oeu', 'Oeu002335.1' => 'oeu', 'Oeu021466.2' => 'oeu', 'Oeu040200.1' => 'oeu', 'Oeu040201.1' => 'oeu', 'Oeu057846.1' => 'oeu', 'Os01g0372700' => 'osa', 'Os07g0485400' => 'osa', 'Os12g0414500' => 'osa', 'Peaxi162Scf00054g00197' => 'pax', 'Peaxi162Scf00076g00920' => 'pax', 'Peaxi162Scf00171g00129' => 'pax', 'Peaxi162Scf00249g00062' => 'pax', 'Peaxi162Scf00761g00051' => 'pax', 'PGR031G3009' => 'pgr', 'PGR083G1253' => 'pgr', 'PGR087G0003' => 'pgr', 'PGR102G2619' => 'pgr', 'PGR142G2819' => 'pgr', 'PGSC0003DMG400015215' => 'stu', 'PGSC0003DMG400022055' => 'stu', 'PGSC0003DMG400023661' => 'stu', 'Phvul.002G305800' => 'pvu', 'Phvul.003G220700' => 'pvu', 'Phvul.010G030800' => 'pvu', 'Potri.002G249700' => 'ptr', 'Potri.006G153900' => 'ptr', 'Potri.007G129800' => 'ptr', 'Potri.017G028800' => 'ptr', 'Potri.018G070000' => 'ptr', 'Pp3c12_7710' => 'ppa', 'Pp3c12_7760' => 'ppa', 'Pp3c1_35170' => 'ppa', 'Pp3c4_19930' => 'ppa', 'PRCOL_00000766' => 'pco', 'PRCOL_00005888' => 'pco', 'Prupe.4G154500' => 'ppe', 'Prupe.5G070100' => 'ppe', 'Prupe.7G068600' => 'ppe', 'Prupe.8G192100' => 'ppe', 'Psat0s4060g0160' => 'psa', 'Psat4g072280' => 'psa', 'Psat7g018640' => 'psa', 'PSO017G6102' => 'pso', 'PSO063G3523' => 'pso', 'PSO063G4989' => 'pso', 'PSO339G5537' => 'pso', 'PSO384G2227' => 'pso', 'PSO386G0259' => 'pso', 'PSO675G2310' => 'pso', 'PSO832G0327' => 'pso', 'QL02p064866' => 'qlo', 'QL07p040810' => 'qlo', 'QL09p045845' => 'qlo', 'QL12p012099' => 'qlo', 'QL12p012112' => 'qlo', 'RcHm_v2.0_Chr2g0123321' => 'rch', 'RcHm_v2.0_Chr5g0028961' => 'rch', 'RcHm_v2.0_Chr6g0283201' => 'rch', 'RcHm_v2.0_Chr7g0228441' => 'rch', 'Rhsim05G0030300' => 'rsi', 'Rhsim05G0030500' => 'rsi', 'Rhsim05G0030800' => 'rsi', 'Rhsim05G0031100' => 'rsi', 'Rhsim06G0183900' => 'rsi', 'Rhsim13G0052000' => 'rsi', 'Sabra02G0190200' => 'sbr', 'Sabra06G0122100' => 'sbr', 'Sabra07G0105700' => 'sbr', 'Sabra17G0017400' => 'sbr', 'Sabra18G0061300' => 'sbr', 'SalBow6G0445' => 'sbo', 'SalBow6G0463' => 'sbo', 'SalBow6G1251' => 'sbo', 'Sc01g0008430' => 'sci', 'Sc08g0008220' => 'sci', 'Sc17g0001800' => 'sci', 'Sed0005108' => 'sed', 'Sed0006747' => 'sed', 'Sed0018812' => 'sed', 'Sed0023162' => 'sed', 'SEGI_12064' => 'sgi', 'SGA_v2.0_scaffold144G35946' => 'sas', 'SGA_v2.0_scaffold170G38769' => 'sas', 'SGA_v2.0_scaffold62G21572' => 'sas', 'SGA_v2.0_scaffold7G04024' => 'sas', 'SMO116G0372' => 'smo', 'SMO165G0027' => 'smo', 'Solyc03g019940.4' => 'sly', 'Solyc09g057950.3' => 'sly', 'Solyc10g080710.2' => 'sly', 'Sopen03g029680' => 'spe', 'Sopen09g020120' => 'spe', 'Sopen10g031250' => 'spe', 'Sp3g06340' => 'spa', 'Sp6g18450' => 'spa', 'Sp7g16870' => 'spa', 'TAR624G0867' => 'tar', 'TAR626G0430' => 'tar', 'TAR633G0582' => 'tar', 'TAR636G2634' => 'tar', 'TAR636G3225' => 'tar', 'THA.LOC104809571' => 'tha', 'THA.LOC104811732' => 'tha', 'THA.LOC104813487' => 'tha', 'THA.LOC104822528' => 'tha', 'Thecc.01G212500' => 'tca', 'Thecc.03G250800' => 'tca', 'Thecc.09G095000' => 'tca', 'Thhalv10000517m.g' => 'esa', 'Thhalv10013096m.g' => 'esa', 'Thhalv10020277m.g' => 'esa', 'Thhalv10024799m.g' => 'esa', 'TPR.G2045' => 'tpr', 'TPR.G25444' => 'tpr', 'TPR.G37633' => 'tpr', 'TWI32G0576' => 'twi', 'TWI36G0799' => 'twi', 'TWI60G0922' => 'twi', 'TWI63G1460' => 'twi', 'TWI75G0503' => 'twi', 'TWI81G0455' => 'twi', 'unitig_22.g5224' => 'ugi', 'unitig_61.g26184' => 'ugi', 'unitig_8.g3697' => 'ugi', 'unitig_899.g15394' => 'ugi', 'vmacro02810' => 'vma', 'vmacro07309' => 'vma', 'vmacro12026' => 'vma', 'VMungo0251G0807' => 'vmu', 'VMungo0251G2154' => 'vmu', 'VMungo0331G0097' => 'vmu', 'VMungo0720G1214' => 'vmu', 'Zm00001eb105060' => 'zma', 'Zm00001eb120130' => 'zma', 'Zm00001eb321560' => 'zma', 'Zm00001eb341390' => 'zma', 'Zm00001eb428260' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001300', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001300' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001300', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '483', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001300' ) ), 'genes' => array( 'A01p20060' => 'bna', 'A03p13240' => 'bna', 'A03p35240' => 'bna', 'A05p40770' => 'bna', 'A08p12980' => 'bna', 'A10p14040' => 'bna', 'A10p14550' => 'bna', 'Aa31LG3G12520' => 'aar', 'Aa31LG5G17990' => 'aar', 'Aa31LG6G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3265' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4475' => 'aag', 'Actinidia02135' => 'ach', 'Actinidia23363' => 'ach', 'Actinidia25280' => 'ach', 'Actinidia30022' => 'ach', 'Actinidia39751' => 'ach', 'Ah.01g002430' => 'amhyb', 'Ah.01g002480' => 'amhyb', 'Ah.01g014750' => 'amhyb', 'Ah.08g218710' => 'amhyb', 'AL239U10010' => 'aly', 'AL2G27280' => 'aly', 'AL2G30930' => 'aly', 'AL3G18720' => 'aly', 'AL7G37410' => 'aly', 'AL8G32490' => 'aly', 'Aqoxy206s002' => 'aox', 'Aqoxy3G02643' => 'aox', 'Aqoxy5G01840' => 'aox', 'Aqoxy5G03483' => 'aox', 'arahy.Tifrunner.gnm1.ann1.24DBAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DM8EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4908EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZG50Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNY53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUH36G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPEJ84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVQ67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N58NZT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF6M8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI6YU' => 'arhy', 'AT1G68420' => 'ath', 'AT1G70980' => 'ath', 'AT3G07420' => 'ath', 'AT4G17300' => 'ath', 'AT5G38750' => 'ath', 'AT5G56680' => 'ath', 'ATR0564G320' => 'atr', 'ATR0564G540' => 'atr', 'ATR0609G037' => 'atr', 'Atru.chr10.1120' => 'acertr', 'Atru.chr12.300' => 'acertr', 'Atru.chr12.337' => 'acertr', 'Atru.chr6.1601' => 'acertr', 'Atru.chr6.1602' => 'acertr', 'Atru.chr6.1603' => 'acertr', 'Atru.chr7.1517' => 'acertr', 'AUR62001197' => 'cqu', 'AUR62007517' => 'cqu', 'AUR62007518' => 'cqu', 'AUR62022131' => 'cqu', 'AUR62031634' => 'cqu', 'AUR62038865' => 'cqu', 'AUR62042796' => 'cqu', 'AUR62044033' => 'cqu', 'BcaB01g04415' => 'bca', 'BcaB03g14703' => 'bca', 'BcaB03g16269' => 'bca', 'BcaB04g18409' => 'bca', 'BcaB08g36069' => 'bca', 'BcaB08g36074' => 'bca', 'BcaC01g04284' => 'bca', 'BcaC01g04286' => 'bca', 'BcaC01g06442' => 'bca', 'BcaC04g19994' => 'bca', 'BcaC04g20061' => 'bca', 'BcaC05g29534' => 'bca', 'BcaC07g38041' => 'bca', 'BcaC07g38044' => 'bca', 'BcaC09g50462' => 'bca', 'BcaNung00103' => 'bca', 'BolC1t02469H' => 'bol', 'BolC3t13989H' => 'bol', 'BolC3t16552H' => 'bol', 'BolC3t16554H' => 'bol', 'BolC5t34642H' => 'bol', 'BolC8t48447H' => 'bol', 'BolC9t57677H' => 'bol', 'BolC9t57750H' => 'bol', 'BraA01t01930Z' => 'bra', 'BraA03t10636Z' => 'bra', 'BraA03t12702Z' => 'bra', 'BraA05t22808Z' => 'bra', 'BraA08t33281Z' => 'bra', 'BraA10t43495Z' => 'bra', 'BraA10t43542Z' => 'bra', 'C01p25200' => 'bna', 'C03p15510' => 'bna', 'C03p42840' => 'bna', 'C03p42860' => 'bna', 'C05p59880' => 'bna', 'C09p48270' => 'bna', 'C09p48990' => 'bna', 'CAN.G128.65' => 'can', 'CAN.G1398.6' => 'can', 'CAN.G858.2' => 'can', 'CAN.G861.31' => 'can', 'CANSAT01G2555' => 'cansat', 'CANSAT01G2737' => 'cansat', 'CANSAT21G1584' => 'cansat', 'CANSAT56G3149' => 'cansat', 'CARHR000660' => 'chi', 'CARHR082060' => 'chi', 'CARHR223920' => 'chi', 'CARHR270370' => 'chi', 'Carub.0003s0696' => 'cru', 'Carub.0004s0660' => 'cru', 'Carub.0007s2410' => 'cru', 'Carub.0008s1715' => 'cru', 'Ca_17383_v3' => 'car', 'Ca_21967_v3' => 'car', 'Ca_23190_v3' => 'car', 'Ca_29442_v3' => 'car', 'CBR_g12968' => 'cbr', 'CBR_g16969' => 'cbr', 'Cc01_g16270' => 'ccan', 'Cc06_g10910' => 'ccan', 'Cc08_g12390' => 'ccan', 'Cc08_g12400' => 'ccan', 'CDE02G0631' => 'cde', 'CDE02G2296' => 'cde', 'CDE04G0341' => 'cde', 'CDE04G1076' => 'cde', 'CDE04G2234' => 'cde', 'CDE07G1974' => 'cde', 'CDE11G0048' => 'cde', 'Cfa003139' => 'cfa', 'Cfa010334' => 'cfa', 'Cfa012720' => 'cfa', 'Cfa015859' => 'cfa', 'Cfa024979' => 'cfa', 'Ciclev10003532m.g' => 'ccl', 'Ciclev10003760m.g' => 'ccl', 'Ciclev10007872m.g' => 'ccl', 'Ciclev10019519m.g' => 'ccl', 'Ciclev10030394m.g' => 'ccl', 'Ciclev10030945m.g' => 'ccl', 'CiPaw.03G220200' => 'cil', 'CiPaw.11G079300' => 'cil', 'CiPaw.13G053900' => 'cil', 'CiPaw.13G054000' => 'cil', 'CiPaw.14G043000' => 'cil', 'ClCG03G016330' => 'cla', 'ClCG09G008450' => 'cla', 'ClCG10G002680' => 'cla', 'COL.COLO4_04505' => 'col', 'COL.COLO4_18254' => 'col', 'COL.COLO4_18255' => 'col', 'COL.COLO4_30918' => 'col', 'COL.COLO4_37172' => 'col', 'Cpa.g.sc29.159' => 'cpa', 'Cpa.g.sc78.58' => 'cpa', 'Cpa.g.sc8.86' => 'cpa', 'Cre03.g193800' => 'cre', 'CsaV3_1G039630' => 'csa', 'CsaV3_3G002710' => 'csa', 'CsaV3_7G026620' => 'csa', 'CSS0004329' => 'camsi', 'CSS0020095' => 'camsi', 'CSS0034916' => 'camsi', 'CSS0035767' => 'camsi', 'CSS0036126' => 'camsi', 'CSS0047906' => 'camsi', 'CSS0049758' => 'camsi', 'DCAR_004765' => 'dca', 'DCAR_008493' => 'dca', 'DCAR_010685' => 'dca', 'Dinv12802' => 'din', 'Dinv18556' => 'din', 'Dinv28818' => 'din', 'Dinv36728' => 'din', 'Dinv39148' => 'din', 'Dinv42285' => 'din', 'Duzib136G0002' => 'dzi', 'Duzib138G1042' => 'dzi', 'Duzib150G0351' => 'dzi', 'Duzib168G0161' => 'dzi', 'Duzib187G1049' => 'dzi', 'Duzib205G1000' => 'dzi', 'Duzib211G0457' => 'dzi', 'ECA238G1281' => 'eca', 'ECA240G0176' => 'eca', 'ECA240G1278' => 'eca', 'ECA248G0673' => 'eca', 'EL10Ac3g05935' => 'bvu', 'EL10Ac7g17985' => 'bvu', 'EL10Ac9g22659' => 'bvu', 'Eucgr.C00933' => 'egr', 'Eucgr.D02080' => 'egr', 'Eucgr.H00731' => 'egr', 'FAN11G0240' => 'fan', 'FAN15G1547' => 'fan', 'FAN15G2194' => 'fan', 'FAN16G2390' => 'fan', 'FAN17G1474' => 'fan', 'FAN19G2852' => 'fan', 'FAN21G3178' => 'fan', 'FAN24G3292' => 'fan', 'FAN25G3143' => 'fan', 'FAN26G2432' => 'fan', 'FAN27G2852' => 'fan', 'FAN28G1286' => 'fan', 'FvH4_1g25310' => 'fve', 'FvH4_2g17960' => 'fve', 'FvH4_3g17430' => 'fve', 'Glyma.03G089300' => 'gma', 'Glyma.05G059500' => 'gma', 'Glyma.05G224000' => 'gma', 'Glyma.08G031100' => 'gma', 'Glyma.16G083800' => 'gma', 'Glyma.17G142000' => 'gma', 'Gohir.A05G210740' => 'ghi', 'Gohir.A05G210760' => 'ghi', 'Gohir.A05G210780' => 'ghi', 'Gohir.A06G046750' => 'ghi', 'Gohir.A06G070200' => 'ghi', 'Gohir.A07G090600' => 'ghi', 'Gohir.A07G197066' => 'ghi', 'Gohir.A08G244350' => 'ghi', 'Gohir.A09G196200' => 'ghi', 'Gohir.A11G141700' => 'ghi', 'Gohir.A11G230302' => 'ghi', 'Gohir.D03G044950' => 'ghi', 'Gohir.D04G058750' => 'ghi', 'Gohir.D05G323525' => 'ghi', 'Gohir.D06G068800' => 'ghi', 'Gohir.D07G095300' => 'ghi', 'Gohir.D08G024601' => 'ghi', 'Gohir.D08G265250' => 'ghi', 'Gohir.D09G127750' => 'ghi', 'Gohir.D09G190800' => 'ghi', 'Gohir.D11G148000' => 'ghi', 'Gohir.D12G032850' => 'ghi', 'Gohir.D13G190966' => 'ghi', 'Gorai.001G102600' => 'gra', 'Gorai.001G229000' => 'gra', 'Gorai.004G283200' => 'gra', 'Gorai.006G213600' => 'gra', 'Gorai.007G158700' => 'gra', 'Gorai.010G080400' => 'gra', 'GSVIVG01004706001' => 'vvi', 'GSVIVG01005287001' => 'vvi', 'GSVIVG01006160001' => 'vvi', 'GSVIVG01013293001' => 'vvi', 'GSVIVG01013821001' => 'vvi', 'GSVIVG01015254001' => 'vvi', 'GSVIVG01023072001' => 'vvi', 'GSVIVG01036115001' => 'vvi', 'HanXRQChr01g0007201' => 'han', 'HanXRQChr01g0030431' => 'han', 'HanXRQChr01g0030441' => 'han', 'HanXRQChr02g0044331' => 'han', 'HanXRQChr03g0087741' => 'han', 'HanXRQChr09g0272701' => 'han', 'HanXRQChr10g0302421' => 'han', 'Haze_03309' => 'cav', 'Haze_07912' => 'cav', 'Haze_25863' => 'cav', 'Hma1.2p1_0098F.1_g048310' => 'hma', 'Hma1.2p1_0405F.1_g145890' => 'hma', 'Hma1.2p1_0663F.1_g198630' => 'hma', 'Hma1.2p1_0663F.1_g198640' => 'hma', 'Hma1.2p1_0781F.1_g216870' => 'hma', 'Hma1.2p1_0982F.1_g243950' => 'hma', 'Hma1.2p1_1074F.1_g254420' => 'hma', 'Hma1.2p1_1172F.1_g263620' => 'hma', 'HPP92_009933' => 'vpl', 'HPP92_014487' => 'vpl', 'HPP92_014488' => 'vpl', 'HPP92_017206' => 'vpl', 'Hund05600' => 'sun', 'Hund14538' => 'sun', 'Hund18486' => 'sun', 'Lalb_Chr09g0330101' => 'lal', 'Lalb_Chr13g0291011' => 'lal', 'Lalb_Chr22g0349811' => 'lal', 'Lj2A1118T68' => 'lonja', 'Lj2C218G3' => 'lonja', 'Lj3g0000697' => 'lja', 'Lj3g0000727' => 'lja', 'Lj4g0012236' => 'lja', 'Lj4g0018864' => 'lja', 'Lj7A670G56' => 'lonja', 'Lsat_1_v5_gn_2_85561' => 'lsa', 'Lsat_1_v5_gn_5_178460' => 'lsa', 'Lsat_1_v5_gn_6_106580' => 'lsa', 'Lsat_1_v5_gn_6_90981' => 'lsa', 'Manes.01G080800' => 'mes', 'Manes.03G030200' => 'mes', 'Manes.12G052400' => 'mes', 'Manes.13G053400' => 'mes', 'Mapoly0043s0090' => 'mpo', 'Mapoly0056s0024' => 'mpo', 'MBI01_g14455_MAGBIO' => 'mbi', 'MBI04_g09502_MAGBIO' => 'mbi', 'MBI04_g46437_MAGBIO' => 'mbi', 'MBI07_g21332_MAGBIO' => 'mbi', 'MBI13_g35418_MAGBIO' => 'mbi', 'MCO02G171' => 'mco', 'MCO16G231' => 'mco', 'MD01G1115900' => 'mdo', 'MD03G1251800' => 'mdo', 'MD05G1158600' => 'mdo', 'MD05G1163500' => 'mdo', 'MD06G1059300' => 'mdo', 'MD10G1153300' => 'mdo', 'MD11G1273000' => 'mdo', 'Medtr4g100920' => 'mtr', 'Medtr7g101050' => 'mtr', 'Medtr8g011530' => 'mtr', 'Medtr8g102050' => 'mtr', 'MELO3C013939.2' => 'cme', 'MELO3C015385.2' => 'cme', 'MELO3C021113.2' => 'cme', 'Migut.A00956' => 'egut', 'Migut.D02469' => 'egut', 'Migut.J00435' => 'egut', 'MSTRG.18811' => 'ama', 'MSTRG.25522' => 'ama', 'MSTRG.6035' => 'ama', 'Nitab4.5_0000001g0370' => 'nta', 'Nitab4.5_0000038g0050' => 'nta', 'Nitab4.5_0001093g0080' => 'nta', 'Nitab4.5_0001495g0030' => 'nta', 'Nitab4.5_0002445g0030' => 'nta', 'Nitab4.5_0007717g0040' => 'nta', 'Nitab4.5_0010147g0010' => 'nta', 'Nitab4.5_0010347g0010' => 'nta', 'Nn1g06240' => 'nnu', 'Nn1g06241' => 'nnu', 'Nn1g08070' => 'nnu', 'Nn5g28583' => 'nnu', 'Nn6g33956' => 'nnu', 'Nn8g38968' => 'nnu', 'Oeu000333.1' => 'oeu', 'Oeu002335.1' => 'oeu', 'Oeu021466.2' => 'oeu', 'Oeu040200.1' => 'oeu', 'Oeu040201.1' => 'oeu', 'Oeu057846.1' => 'oeu', 'Os01g0372700' => 'osa', 'Os07g0485400' => 'osa', 'Os12g0414500' => 'osa', 'Peaxi162Scf00054g00197' => 'pax', 'Peaxi162Scf00076g00920' => 'pax', 'Peaxi162Scf00171g00129' => 'pax', 'Peaxi162Scf00249g00062' => 'pax', 'Peaxi162Scf00761g00051' => 'pax', 'PGR031G3009' => 'pgr', 'PGR083G1253' => 'pgr', 'PGR087G0003' => 'pgr', 'PGR102G2619' => 'pgr', 'PGR142G2819' => 'pgr', 'PGSC0003DMG400015215' => 'stu', 'PGSC0003DMG400022055' => 'stu', 'PGSC0003DMG400023661' => 'stu', 'Phvul.002G305800' => 'pvu', 'Phvul.003G220700' => 'pvu', 'Phvul.010G030800' => 'pvu', 'Potri.002G249700' => 'ptr', 'Potri.006G153900' => 'ptr', 'Potri.007G129800' => 'ptr', 'Potri.017G028800' => 'ptr', 'Potri.018G070000' => 'ptr', 'Pp3c12_7710' => 'ppa', 'Pp3c12_7760' => 'ppa', 'Pp3c1_35170' => 'ppa', 'Pp3c4_19930' => 'ppa', 'PRCOL_00000766' => 'pco', 'PRCOL_00005888' => 'pco', 'Prupe.4G154500' => 'ppe', 'Prupe.5G070100' => 'ppe', 'Prupe.7G068600' => 'ppe', 'Prupe.8G192100' => 'ppe', 'Psat0s4060g0160' => 'psa', 'Psat4g072280' => 'psa', 'Psat7g018640' => 'psa', 'PSO017G6102' => 'pso', 'PSO063G3523' => 'pso', 'PSO063G4989' => 'pso', 'PSO339G5537' => 'pso', 'PSO384G2227' => 'pso', 'PSO386G0259' => 'pso', 'PSO675G2310' => 'pso', 'PSO832G0327' => 'pso', 'QL02p064866' => 'qlo', 'QL07p040810' => 'qlo', 'QL09p045845' => 'qlo', 'QL12p012099' => 'qlo', 'QL12p012112' => 'qlo', 'RcHm_v2.0_Chr2g0123321' => 'rch', 'RcHm_v2.0_Chr5g0028961' => 'rch', 'RcHm_v2.0_Chr6g0283201' => 'rch', 'RcHm_v2.0_Chr7g0228441' => 'rch', 'Rhsim05G0030300' => 'rsi', 'Rhsim05G0030500' => 'rsi', 'Rhsim05G0030800' => 'rsi', 'Rhsim05G0031100' => 'rsi', 'Rhsim06G0183900' => 'rsi', 'Rhsim13G0052000' => 'rsi', 'Sabra02G0190200' => 'sbr', 'Sabra06G0122100' => 'sbr', 'Sabra07G0105700' => 'sbr', 'Sabra17G0017400' => 'sbr', 'Sabra18G0061300' => 'sbr', 'SalBow6G0445' => 'sbo', 'SalBow6G0463' => 'sbo', 'SalBow6G1251' => 'sbo', 'Sc01g0008430' => 'sci', 'Sc08g0008220' => 'sci', 'Sc17g0001800' => 'sci', 'Sed0005108' => 'sed', 'Sed0006747' => 'sed', 'Sed0018812' => 'sed', 'Sed0023162' => 'sed', 'SEGI_12064' => 'sgi', 'SGA_v2.0_scaffold144G35946' => 'sas', 'SGA_v2.0_scaffold170G38769' => 'sas', 'SGA_v2.0_scaffold62G21572' => 'sas', 'SGA_v2.0_scaffold7G04024' => 'sas', 'SMO116G0372' => 'smo', 'SMO165G0027' => 'smo', 'Solyc03g019940.4' => 'sly', 'Solyc09g057950.3' => 'sly', 'Solyc10g080710.2' => 'sly', 'Sopen03g029680' => 'spe', 'Sopen09g020120' => 'spe', 'Sopen10g031250' => 'spe', 'Sp3g06340' => 'spa', 'Sp6g18450' => 'spa', 'Sp7g16870' => 'spa', 'TAR624G0867' => 'tar', 'TAR626G0430' => 'tar', 'TAR633G0582' => 'tar', 'TAR636G2634' => 'tar', 'TAR636G3225' => 'tar', 'THA.LOC104809571' => 'tha', 'THA.LOC104811732' => 'tha', 'THA.LOC104813487' => 'tha', 'THA.LOC104822528' => 'tha', 'Thecc.01G212500' => 'tca', 'Thecc.03G250800' => 'tca', 'Thecc.09G095000' => 'tca', 'Thhalv10000517m.g' => 'esa', 'Thhalv10013096m.g' => 'esa', 'Thhalv10020277m.g' => 'esa', 'Thhalv10024799m.g' => 'esa', 'TPR.G2045' => 'tpr', 'TPR.G25444' => 'tpr', 'TPR.G37633' => 'tpr', 'TWI32G0576' => 'twi', 'TWI36G0799' => 'twi', 'TWI60G0922' => 'twi', 'TWI63G1460' => 'twi', 'TWI75G0503' => 'twi', 'TWI81G0455' => 'twi', 'unitig_22.g5224' => 'ugi', 'unitig_61.g26184' => 'ugi', 'unitig_8.g3697' => 'ugi', 'unitig_899.g15394' => 'ugi', 'vmacro02810' => 'vma', 'vmacro07309' => 'vma', 'vmacro12026' => 'vma', 'VMungo0251G0807' => 'vmu', 'VMungo0251G2154' => 'vmu', 'VMungo0331G0097' => 'vmu', 'VMungo0720G1214' => 'vmu', 'Zm00001eb105060' => 'zma', 'Zm00001eb120130' => 'zma', 'Zm00001eb321560' => 'zma', 'Zm00001eb341390' => 'zma', 'Zm00001eb428260' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001300' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001300' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001300' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001300' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001300', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '483', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p20060' => 'bna', 'A03p13240' => 'bna', 'A03p35240' => 'bna', 'A05p40770' => 'bna', 'A08p12980' => 'bna', 'A10p14040' => 'bna', 'A10p14550' => 'bna', 'Aa31LG3G12520' => 'aar', 'Aa31LG5G17990' => 'aar', 'Aa31LG6G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3265' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4475' => 'aag', 'Actinidia02135' => 'ach', 'Actinidia23363' => 'ach', 'Actinidia25280' => 'ach', 'Actinidia30022' => 'ach', 'Actinidia39751' => 'ach', 'Ah.01g002430' => 'amhyb', 'Ah.01g002480' => 'amhyb', 'Ah.01g014750' => 'amhyb', 'Ah.08g218710' => 'amhyb', 'AL239U10010' => 'aly', 'AL2G27280' => 'aly', 'AL2G30930' => 'aly', 'AL3G18720' => 'aly', 'AL7G37410' => 'aly', 'AL8G32490' => 'aly', 'Aqoxy206s002' => 'aox', 'Aqoxy3G02643' => 'aox', 'Aqoxy5G01840' => 'aox', 'Aqoxy5G03483' => 'aox', 'arahy.Tifrunner.gnm1.ann1.24DBAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DM8EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4908EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZG50Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNY53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUH36G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPEJ84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVQ67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N58NZT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF6M8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI6YU' => 'arhy', 'AT1G68420' => 'ath', 'AT1G70980' => 'ath', 'AT3G07420' => 'ath', 'AT4G17300' => 'ath', 'AT5G38750' => 'ath', 'AT5G56680' => 'ath', 'ATR0564G320' => 'atr', 'ATR0564G540' => 'atr', 'ATR0609G037' => 'atr', 'Atru.chr10.1120' => 'acertr', 'Atru.chr12.300' => 'acertr', 'Atru.chr12.337' => 'acertr', 'Atru.chr6.1601' => 'acertr', 'Atru.chr6.1602' => 'acertr', 'Atru.chr6.1603' => 'acertr', 'Atru.chr7.1517' => 'acertr', 'AUR62001197' => 'cqu', 'AUR62007517' => 'cqu', 'AUR62007518' => 'cqu', 'AUR62022131' => 'cqu', 'AUR62031634' => 'cqu', 'AUR62038865' => 'cqu', 'AUR62042796' => 'cqu', 'AUR62044033' => 'cqu', 'BcaB01g04415' => 'bca', 'BcaB03g14703' => 'bca', 'BcaB03g16269' => 'bca', 'BcaB04g18409' => 'bca', 'BcaB08g36069' => 'bca', 'BcaB08g36074' => 'bca', 'BcaC01g04284' => 'bca', 'BcaC01g04286' => 'bca', 'BcaC01g06442' => 'bca', 'BcaC04g19994' => 'bca', 'BcaC04g20061' => 'bca', 'BcaC05g29534' => 'bca', 'BcaC07g38041' => 'bca', 'BcaC07g38044' => 'bca', 'BcaC09g50462' => 'bca', 'BcaNung00103' => 'bca', 'BolC1t02469H' => 'bol', 'BolC3t13989H' => 'bol', 'BolC3t16552H' => 'bol', 'BolC3t16554H' => 'bol', 'BolC5t34642H' => 'bol', 'BolC8t48447H' => 'bol', 'BolC9t57677H' => 'bol', 'BolC9t57750H' => 'bol', 'BraA01t01930Z' => 'bra', 'BraA03t10636Z' => 'bra', 'BraA03t12702Z' => 'bra', 'BraA05t22808Z' => 'bra', 'BraA08t33281Z' => 'bra', 'BraA10t43495Z' => 'bra', 'BraA10t43542Z' => 'bra', 'C01p25200' => 'bna', 'C03p15510' => 'bna', 'C03p42840' => 'bna', 'C03p42860' => 'bna', 'C05p59880' => 'bna', 'C09p48270' => 'bna', 'C09p48990' => 'bna', 'CAN.G128.65' => 'can', 'CAN.G1398.6' => 'can', 'CAN.G858.2' => 'can', 'CAN.G861.31' => 'can', 'CANSAT01G2555' => 'cansat', 'CANSAT01G2737' => 'cansat', 'CANSAT21G1584' => 'cansat', 'CANSAT56G3149' => 'cansat', 'CARHR000660' => 'chi', 'CARHR082060' => 'chi', 'CARHR223920' => 'chi', 'CARHR270370' => 'chi', 'Carub.0003s0696' => 'cru', 'Carub.0004s0660' => 'cru', 'Carub.0007s2410' => 'cru', 'Carub.0008s1715' => 'cru', 'Ca_17383_v3' => 'car', 'Ca_21967_v3' => 'car', 'Ca_23190_v3' => 'car', 'Ca_29442_v3' => 'car', 'CBR_g12968' => 'cbr', 'CBR_g16969' => 'cbr', 'Cc01_g16270' => 'ccan', 'Cc06_g10910' => 'ccan', 'Cc08_g12390' => 'ccan', 'Cc08_g12400' => 'ccan', 'CDE02G0631' => 'cde', 'CDE02G2296' => 'cde', 'CDE04G0341' => 'cde', 'CDE04G1076' => 'cde', 'CDE04G2234' => 'cde', 'CDE07G1974' => 'cde', 'CDE11G0048' => 'cde', 'Cfa003139' => 'cfa', 'Cfa010334' => 'cfa', 'Cfa012720' => 'cfa', 'Cfa015859' => 'cfa', 'Cfa024979' => 'cfa', 'Ciclev10003532m.g' => 'ccl', 'Ciclev10003760m.g' => 'ccl', 'Ciclev10007872m.g' => 'ccl', 'Ciclev10019519m.g' => 'ccl', 'Ciclev10030394m.g' => 'ccl', 'Ciclev10030945m.g' => 'ccl', 'CiPaw.03G220200' => 'cil', 'CiPaw.11G079300' => 'cil', 'CiPaw.13G053900' => 'cil', 'CiPaw.13G054000' => 'cil', 'CiPaw.14G043000' => 'cil', 'ClCG03G016330' => 'cla', 'ClCG09G008450' => 'cla', 'ClCG10G002680' => 'cla', 'COL.COLO4_04505' => 'col', 'COL.COLO4_18254' => 'col', 'COL.COLO4_18255' => 'col', 'COL.COLO4_30918' => 'col', 'COL.COLO4_37172' => 'col', 'Cpa.g.sc29.159' => 'cpa', 'Cpa.g.sc78.58' => 'cpa', 'Cpa.g.sc8.86' => 'cpa', 'Cre03.g193800' => 'cre', 'CsaV3_1G039630' => 'csa', 'CsaV3_3G002710' => 'csa', 'CsaV3_7G026620' => 'csa', 'CSS0004329' => 'camsi', 'CSS0020095' => 'camsi', 'CSS0034916' => 'camsi', 'CSS0035767' => 'camsi', 'CSS0036126' => 'camsi', 'CSS0047906' => 'camsi', 'CSS0049758' => 'camsi', 'DCAR_004765' => 'dca', 'DCAR_008493' => 'dca', 'DCAR_010685' => 'dca', 'Dinv12802' => 'din', 'Dinv18556' => 'din', 'Dinv28818' => 'din', 'Dinv36728' => 'din', 'Dinv39148' => 'din', 'Dinv42285' => 'din', 'Duzib136G0002' => 'dzi', 'Duzib138G1042' => 'dzi', 'Duzib150G0351' => 'dzi', 'Duzib168G0161' => 'dzi', 'Duzib187G1049' => 'dzi', 'Duzib205G1000' => 'dzi', 'Duzib211G0457' => 'dzi', 'ECA238G1281' => 'eca', 'ECA240G0176' => 'eca', 'ECA240G1278' => 'eca', 'ECA248G0673' => 'eca', 'EL10Ac3g05935' => 'bvu', 'EL10Ac7g17985' => 'bvu', 'EL10Ac9g22659' => 'bvu', 'Eucgr.C00933' => 'egr', 'Eucgr.D02080' => 'egr', 'Eucgr.H00731' => 'egr', 'FAN11G0240' => 'fan', 'FAN15G1547' => 'fan', 'FAN15G2194' => 'fan', 'FAN16G2390' => 'fan', 'FAN17G1474' => 'fan', 'FAN19G2852' => 'fan', 'FAN21G3178' => 'fan', 'FAN24G3292' => 'fan', 'FAN25G3143' => 'fan', 'FAN26G2432' => 'fan', 'FAN27G2852' => 'fan', 'FAN28G1286' => 'fan', 'FvH4_1g25310' => 'fve', 'FvH4_2g17960' => 'fve', 'FvH4_3g17430' => 'fve', 'Glyma.03G089300' => 'gma', 'Glyma.05G059500' => 'gma', 'Glyma.05G224000' => 'gma', 'Glyma.08G031100' => 'gma', 'Glyma.16G083800' => 'gma', 'Glyma.17G142000' => 'gma', 'Gohir.A05G210740' => 'ghi', 'Gohir.A05G210760' => 'ghi', 'Gohir.A05G210780' => 'ghi', 'Gohir.A06G046750' => 'ghi', 'Gohir.A06G070200' => 'ghi', 'Gohir.A07G090600' => 'ghi', 'Gohir.A07G197066' => 'ghi', 'Gohir.A08G244350' => 'ghi', 'Gohir.A09G196200' => 'ghi', 'Gohir.A11G141700' => 'ghi', 'Gohir.A11G230302' => 'ghi', 'Gohir.D03G044950' => 'ghi', 'Gohir.D04G058750' => 'ghi', 'Gohir.D05G323525' => 'ghi', 'Gohir.D06G068800' => 'ghi', 'Gohir.D07G095300' => 'ghi', 'Gohir.D08G024601' => 'ghi', 'Gohir.D08G265250' => 'ghi', 'Gohir.D09G127750' => 'ghi', 'Gohir.D09G190800' => 'ghi', 'Gohir.D11G148000' => 'ghi', 'Gohir.D12G032850' => 'ghi', 'Gohir.D13G190966' => 'ghi', 'Gorai.001G102600' => 'gra', 'Gorai.001G229000' => 'gra', 'Gorai.004G283200' => 'gra', 'Gorai.006G213600' => 'gra', 'Gorai.007G158700' => 'gra', 'Gorai.010G080400' => 'gra', 'GSVIVG01004706001' => 'vvi', 'GSVIVG01005287001' => 'vvi', 'GSVIVG01006160001' => 'vvi', 'GSVIVG01013293001' => 'vvi', 'GSVIVG01013821001' => 'vvi', 'GSVIVG01015254001' => 'vvi', 'GSVIVG01023072001' => 'vvi', 'GSVIVG01036115001' => 'vvi', 'HanXRQChr01g0007201' => 'han', 'HanXRQChr01g0030431' => 'han', 'HanXRQChr01g0030441' => 'han', 'HanXRQChr02g0044331' => 'han', 'HanXRQChr03g0087741' => 'han', 'HanXRQChr09g0272701' => 'han', 'HanXRQChr10g0302421' => 'han', 'Haze_03309' => 'cav', 'Haze_07912' => 'cav', 'Haze_25863' => 'cav', 'Hma1.2p1_0098F.1_g048310' => 'hma', 'Hma1.2p1_0405F.1_g145890' => 'hma', 'Hma1.2p1_0663F.1_g198630' => 'hma', 'Hma1.2p1_0663F.1_g198640' => 'hma', 'Hma1.2p1_0781F.1_g216870' => 'hma', 'Hma1.2p1_0982F.1_g243950' => 'hma', 'Hma1.2p1_1074F.1_g254420' => 'hma', 'Hma1.2p1_1172F.1_g263620' => 'hma', 'HPP92_009933' => 'vpl', 'HPP92_014487' => 'vpl', 'HPP92_014488' => 'vpl', 'HPP92_017206' => 'vpl', 'Hund05600' => 'sun', 'Hund14538' => 'sun', 'Hund18486' => 'sun', 'Lalb_Chr09g0330101' => 'lal', 'Lalb_Chr13g0291011' => 'lal', 'Lalb_Chr22g0349811' => 'lal', 'Lj2A1118T68' => 'lonja', 'Lj2C218G3' => 'lonja', 'Lj3g0000697' => 'lja', 'Lj3g0000727' => 'lja', 'Lj4g0012236' => 'lja', 'Lj4g0018864' => 'lja', 'Lj7A670G56' => 'lonja', 'Lsat_1_v5_gn_2_85561' => 'lsa', 'Lsat_1_v5_gn_5_178460' => 'lsa', 'Lsat_1_v5_gn_6_106580' => 'lsa', 'Lsat_1_v5_gn_6_90981' => 'lsa', 'Manes.01G080800' => 'mes', 'Manes.03G030200' => 'mes', 'Manes.12G052400' => 'mes', 'Manes.13G053400' => 'mes', 'Mapoly0043s0090' => 'mpo', 'Mapoly0056s0024' => 'mpo', 'MBI01_g14455_MAGBIO' => 'mbi', 'MBI04_g09502_MAGBIO' => 'mbi', 'MBI04_g46437_MAGBIO' => 'mbi', 'MBI07_g21332_MAGBIO' => 'mbi', 'MBI13_g35418_MAGBIO' => 'mbi', 'MCO02G171' => 'mco', 'MCO16G231' => 'mco', 'MD01G1115900' => 'mdo', 'MD03G1251800' => 'mdo', 'MD05G1158600' => 'mdo', 'MD05G1163500' => 'mdo', 'MD06G1059300' => 'mdo', 'MD10G1153300' => 'mdo', 'MD11G1273000' => 'mdo', 'Medtr4g100920' => 'mtr', 'Medtr7g101050' => 'mtr', 'Medtr8g011530' => 'mtr', 'Medtr8g102050' => 'mtr', 'MELO3C013939.2' => 'cme', 'MELO3C015385.2' => 'cme', 'MELO3C021113.2' => 'cme', 'Migut.A00956' => 'egut', 'Migut.D02469' => 'egut', 'Migut.J00435' => 'egut', 'MSTRG.18811' => 'ama', 'MSTRG.25522' => 'ama', 'MSTRG.6035' => 'ama', 'Nitab4.5_0000001g0370' => 'nta', 'Nitab4.5_0000038g0050' => 'nta', 'Nitab4.5_0001093g0080' => 'nta', 'Nitab4.5_0001495g0030' => 'nta', 'Nitab4.5_0002445g0030' => 'nta', 'Nitab4.5_0007717g0040' => 'nta', 'Nitab4.5_0010147g0010' => 'nta', 'Nitab4.5_0010347g0010' => 'nta', 'Nn1g06240' => 'nnu', 'Nn1g06241' => 'nnu', 'Nn1g08070' => 'nnu', 'Nn5g28583' => 'nnu', 'Nn6g33956' => 'nnu', 'Nn8g38968' => 'nnu', 'Oeu000333.1' => 'oeu', 'Oeu002335.1' => 'oeu', 'Oeu021466.2' => 'oeu', 'Oeu040200.1' => 'oeu', 'Oeu040201.1' => 'oeu', 'Oeu057846.1' => 'oeu', 'Os01g0372700' => 'osa', 'Os07g0485400' => 'osa', 'Os12g0414500' => 'osa', 'Peaxi162Scf00054g00197' => 'pax', 'Peaxi162Scf00076g00920' => 'pax', 'Peaxi162Scf00171g00129' => 'pax', 'Peaxi162Scf00249g00062' => 'pax', 'Peaxi162Scf00761g00051' => 'pax', 'PGR031G3009' => 'pgr', 'PGR083G1253' => 'pgr', 'PGR087G0003' => 'pgr', 'PGR102G2619' => 'pgr', 'PGR142G2819' => 'pgr', 'PGSC0003DMG400015215' => 'stu', 'PGSC0003DMG400022055' => 'stu', 'PGSC0003DMG400023661' => 'stu', 'Phvul.002G305800' => 'pvu', 'Phvul.003G220700' => 'pvu', 'Phvul.010G030800' => 'pvu', 'Potri.002G249700' => 'ptr', 'Potri.006G153900' => 'ptr', 'Potri.007G129800' => 'ptr', 'Potri.017G028800' => 'ptr', 'Potri.018G070000' => 'ptr', 'Pp3c12_7710' => 'ppa', 'Pp3c12_7760' => 'ppa', 'Pp3c1_35170' => 'ppa', 'Pp3c4_19930' => 'ppa', 'PRCOL_00000766' => 'pco', 'PRCOL_00005888' => 'pco', 'Prupe.4G154500' => 'ppe', 'Prupe.5G070100' => 'ppe', 'Prupe.7G068600' => 'ppe', 'Prupe.8G192100' => 'ppe', 'Psat0s4060g0160' => 'psa', 'Psat4g072280' => 'psa', 'Psat7g018640' => 'psa', 'PSO017G6102' => 'pso', 'PSO063G3523' => 'pso', 'PSO063G4989' => 'pso', 'PSO339G5537' => 'pso', 'PSO384G2227' => 'pso', 'PSO386G0259' => 'pso', 'PSO675G2310' => 'pso', 'PSO832G0327' => 'pso', 'QL02p064866' => 'qlo', 'QL07p040810' => 'qlo', 'QL09p045845' => 'qlo', 'QL12p012099' => 'qlo', 'QL12p012112' => 'qlo', 'RcHm_v2.0_Chr2g0123321' => 'rch', 'RcHm_v2.0_Chr5g0028961' => 'rch', 'RcHm_v2.0_Chr6g0283201' => 'rch', 'RcHm_v2.0_Chr7g0228441' => 'rch', 'Rhsim05G0030300' => 'rsi', 'Rhsim05G0030500' => 'rsi', 'Rhsim05G0030800' => 'rsi', 'Rhsim05G0031100' => 'rsi', 'Rhsim06G0183900' => 'rsi', 'Rhsim13G0052000' => 'rsi', 'Sabra02G0190200' => 'sbr', 'Sabra06G0122100' => 'sbr', 'Sabra07G0105700' => 'sbr', 'Sabra17G0017400' => 'sbr', 'Sabra18G0061300' => 'sbr', 'SalBow6G0445' => 'sbo', 'SalBow6G0463' => 'sbo', 'SalBow6G1251' => 'sbo', 'Sc01g0008430' => 'sci', 'Sc08g0008220' => 'sci', 'Sc17g0001800' => 'sci', 'Sed0005108' => 'sed', 'Sed0006747' => 'sed', 'Sed0018812' => 'sed', 'Sed0023162' => 'sed', 'SEGI_12064' => 'sgi', 'SGA_v2.0_scaffold144G35946' => 'sas', 'SGA_v2.0_scaffold170G38769' => 'sas', 'SGA_v2.0_scaffold62G21572' => 'sas', 'SGA_v2.0_scaffold7G04024' => 'sas', 'SMO116G0372' => 'smo', 'SMO165G0027' => 'smo', 'Solyc03g019940.4' => 'sly', 'Solyc09g057950.3' => 'sly', 'Solyc10g080710.2' => 'sly', 'Sopen03g029680' => 'spe', 'Sopen09g020120' => 'spe', 'Sopen10g031250' => 'spe', 'Sp3g06340' => 'spa', 'Sp6g18450' => 'spa', 'Sp7g16870' => 'spa', 'TAR624G0867' => 'tar', 'TAR626G0430' => 'tar', 'TAR633G0582' => 'tar', 'TAR636G2634' => 'tar', 'TAR636G3225' => 'tar', 'THA.LOC104809571' => 'tha', 'THA.LOC104811732' => 'tha', 'THA.LOC104813487' => 'tha', 'THA.LOC104822528' => 'tha', 'Thecc.01G212500' => 'tca', 'Thecc.03G250800' => 'tca', 'Thecc.09G095000' => 'tca', 'Thhalv10000517m.g' => 'esa', 'Thhalv10013096m.g' => 'esa', 'Thhalv10020277m.g' => 'esa', 'Thhalv10024799m.g' => 'esa', 'TPR.G2045' => 'tpr', 'TPR.G25444' => 'tpr', 'TPR.G37633' => 'tpr', 'TWI32G0576' => 'twi', 'TWI36G0799' => 'twi', 'TWI60G0922' => 'twi', 'TWI63G1460' => 'twi', 'TWI75G0503' => 'twi', 'TWI81G0455' => 'twi', 'unitig_22.g5224' => 'ugi', 'unitig_61.g26184' => 'ugi', 'unitig_8.g3697' => 'ugi', 'unitig_899.g15394' => 'ugi', 'vmacro02810' => 'vma', 'vmacro07309' => 'vma', 'vmacro12026' => 'vma', 'VMungo0251G0807' => 'vmu', 'VMungo0251G2154' => 'vmu', 'VMungo0331G0097' => 'vmu', 'VMungo0720G1214' => 'vmu', 'Zm00001eb105060' => 'zma', 'Zm00001eb120130' => 'zma', 'Zm00001eb321560' => 'zma', 'Zm00001eb341390' => 'zma', 'Zm00001eb428260' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001300', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001300' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001300', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '483', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001300' ) ), 'genes' => array( 'A01p20060' => 'bna', 'A03p13240' => 'bna', 'A03p35240' => 'bna', 'A05p40770' => 'bna', 'A08p12980' => 'bna', 'A10p14040' => 'bna', 'A10p14550' => 'bna', 'Aa31LG3G12520' => 'aar', 'Aa31LG5G17990' => 'aar', 'Aa31LG6G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3265' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4475' => 'aag', 'Actinidia02135' => 'ach', 'Actinidia23363' => 'ach', 'Actinidia25280' => 'ach', 'Actinidia30022' => 'ach', 'Actinidia39751' => 'ach', 'Ah.01g002430' => 'amhyb', 'Ah.01g002480' => 'amhyb', 'Ah.01g014750' => 'amhyb', 'Ah.08g218710' => 'amhyb', 'AL239U10010' => 'aly', 'AL2G27280' => 'aly', 'AL2G30930' => 'aly', 'AL3G18720' => 'aly', 'AL7G37410' => 'aly', 'AL8G32490' => 'aly', 'Aqoxy206s002' => 'aox', 'Aqoxy3G02643' => 'aox', 'Aqoxy5G01840' => 'aox', 'Aqoxy5G03483' => 'aox', 'arahy.Tifrunner.gnm1.ann1.24DBAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DM8EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4908EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZG50Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNY53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUH36G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPEJ84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVQ67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N58NZT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF6M8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI6YU' => 'arhy', 'AT1G68420' => 'ath', 'AT1G70980' => 'ath', 'AT3G07420' => 'ath', 'AT4G17300' => 'ath', 'AT5G38750' => 'ath', 'AT5G56680' => 'ath', 'ATR0564G320' => 'atr', 'ATR0564G540' => 'atr', 'ATR0609G037' => 'atr', 'Atru.chr10.1120' => 'acertr', 'Atru.chr12.300' => 'acertr', 'Atru.chr12.337' => 'acertr', 'Atru.chr6.1601' => 'acertr', 'Atru.chr6.1602' => 'acertr', 'Atru.chr6.1603' => 'acertr', 'Atru.chr7.1517' => 'acertr', 'AUR62001197' => 'cqu', 'AUR62007517' => 'cqu', 'AUR62007518' => 'cqu', 'AUR62022131' => 'cqu', 'AUR62031634' => 'cqu', 'AUR62038865' => 'cqu', 'AUR62042796' => 'cqu', 'AUR62044033' => 'cqu', 'BcaB01g04415' => 'bca', 'BcaB03g14703' => 'bca', 'BcaB03g16269' => 'bca', 'BcaB04g18409' => 'bca', 'BcaB08g36069' => 'bca', 'BcaB08g36074' => 'bca', 'BcaC01g04284' => 'bca', 'BcaC01g04286' => 'bca', 'BcaC01g06442' => 'bca', 'BcaC04g19994' => 'bca', 'BcaC04g20061' => 'bca', 'BcaC05g29534' => 'bca', 'BcaC07g38041' => 'bca', 'BcaC07g38044' => 'bca', 'BcaC09g50462' => 'bca', 'BcaNung00103' => 'bca', 'BolC1t02469H' => 'bol', 'BolC3t13989H' => 'bol', 'BolC3t16552H' => 'bol', 'BolC3t16554H' => 'bol', 'BolC5t34642H' => 'bol', 'BolC8t48447H' => 'bol', 'BolC9t57677H' => 'bol', 'BolC9t57750H' => 'bol', 'BraA01t01930Z' => 'bra', 'BraA03t10636Z' => 'bra', 'BraA03t12702Z' => 'bra', 'BraA05t22808Z' => 'bra', 'BraA08t33281Z' => 'bra', 'BraA10t43495Z' => 'bra', 'BraA10t43542Z' => 'bra', 'C01p25200' => 'bna', 'C03p15510' => 'bna', 'C03p42840' => 'bna', 'C03p42860' => 'bna', 'C05p59880' => 'bna', 'C09p48270' => 'bna', 'C09p48990' => 'bna', 'CAN.G128.65' => 'can', 'CAN.G1398.6' => 'can', 'CAN.G858.2' => 'can', 'CAN.G861.31' => 'can', 'CANSAT01G2555' => 'cansat', 'CANSAT01G2737' => 'cansat', 'CANSAT21G1584' => 'cansat', 'CANSAT56G3149' => 'cansat', 'CARHR000660' => 'chi', 'CARHR082060' => 'chi', 'CARHR223920' => 'chi', 'CARHR270370' => 'chi', 'Carub.0003s0696' => 'cru', 'Carub.0004s0660' => 'cru', 'Carub.0007s2410' => 'cru', 'Carub.0008s1715' => 'cru', 'Ca_17383_v3' => 'car', 'Ca_21967_v3' => 'car', 'Ca_23190_v3' => 'car', 'Ca_29442_v3' => 'car', 'CBR_g12968' => 'cbr', 'CBR_g16969' => 'cbr', 'Cc01_g16270' => 'ccan', 'Cc06_g10910' => 'ccan', 'Cc08_g12390' => 'ccan', 'Cc08_g12400' => 'ccan', 'CDE02G0631' => 'cde', 'CDE02G2296' => 'cde', 'CDE04G0341' => 'cde', 'CDE04G1076' => 'cde', 'CDE04G2234' => 'cde', 'CDE07G1974' => 'cde', 'CDE11G0048' => 'cde', 'Cfa003139' => 'cfa', 'Cfa010334' => 'cfa', 'Cfa012720' => 'cfa', 'Cfa015859' => 'cfa', 'Cfa024979' => 'cfa', 'Ciclev10003532m.g' => 'ccl', 'Ciclev10003760m.g' => 'ccl', 'Ciclev10007872m.g' => 'ccl', 'Ciclev10019519m.g' => 'ccl', 'Ciclev10030394m.g' => 'ccl', 'Ciclev10030945m.g' => 'ccl', 'CiPaw.03G220200' => 'cil', 'CiPaw.11G079300' => 'cil', 'CiPaw.13G053900' => 'cil', 'CiPaw.13G054000' => 'cil', 'CiPaw.14G043000' => 'cil', 'ClCG03G016330' => 'cla', 'ClCG09G008450' => 'cla', 'ClCG10G002680' => 'cla', 'COL.COLO4_04505' => 'col', 'COL.COLO4_18254' => 'col', 'COL.COLO4_18255' => 'col', 'COL.COLO4_30918' => 'col', 'COL.COLO4_37172' => 'col', 'Cpa.g.sc29.159' => 'cpa', 'Cpa.g.sc78.58' => 'cpa', 'Cpa.g.sc8.86' => 'cpa', 'Cre03.g193800' => 'cre', 'CsaV3_1G039630' => 'csa', 'CsaV3_3G002710' => 'csa', 'CsaV3_7G026620' => 'csa', 'CSS0004329' => 'camsi', 'CSS0020095' => 'camsi', 'CSS0034916' => 'camsi', 'CSS0035767' => 'camsi', 'CSS0036126' => 'camsi', 'CSS0047906' => 'camsi', 'CSS0049758' => 'camsi', 'DCAR_004765' => 'dca', 'DCAR_008493' => 'dca', 'DCAR_010685' => 'dca', 'Dinv12802' => 'din', 'Dinv18556' => 'din', 'Dinv28818' => 'din', 'Dinv36728' => 'din', 'Dinv39148' => 'din', 'Dinv42285' => 'din', 'Duzib136G0002' => 'dzi', 'Duzib138G1042' => 'dzi', 'Duzib150G0351' => 'dzi', 'Duzib168G0161' => 'dzi', 'Duzib187G1049' => 'dzi', 'Duzib205G1000' => 'dzi', 'Duzib211G0457' => 'dzi', 'ECA238G1281' => 'eca', 'ECA240G0176' => 'eca', 'ECA240G1278' => 'eca', 'ECA248G0673' => 'eca', 'EL10Ac3g05935' => 'bvu', 'EL10Ac7g17985' => 'bvu', 'EL10Ac9g22659' => 'bvu', 'Eucgr.C00933' => 'egr', 'Eucgr.D02080' => 'egr', 'Eucgr.H00731' => 'egr', 'FAN11G0240' => 'fan', 'FAN15G1547' => 'fan', 'FAN15G2194' => 'fan', 'FAN16G2390' => 'fan', 'FAN17G1474' => 'fan', 'FAN19G2852' => 'fan', 'FAN21G3178' => 'fan', 'FAN24G3292' => 'fan', 'FAN25G3143' => 'fan', 'FAN26G2432' => 'fan', 'FAN27G2852' => 'fan', 'FAN28G1286' => 'fan', 'FvH4_1g25310' => 'fve', 'FvH4_2g17960' => 'fve', 'FvH4_3g17430' => 'fve', 'Glyma.03G089300' => 'gma', 'Glyma.05G059500' => 'gma', 'Glyma.05G224000' => 'gma', 'Glyma.08G031100' => 'gma', 'Glyma.16G083800' => 'gma', 'Glyma.17G142000' => 'gma', 'Gohir.A05G210740' => 'ghi', 'Gohir.A05G210760' => 'ghi', 'Gohir.A05G210780' => 'ghi', 'Gohir.A06G046750' => 'ghi', 'Gohir.A06G070200' => 'ghi', 'Gohir.A07G090600' => 'ghi', 'Gohir.A07G197066' => 'ghi', 'Gohir.A08G244350' => 'ghi', 'Gohir.A09G196200' => 'ghi', 'Gohir.A11G141700' => 'ghi', 'Gohir.A11G230302' => 'ghi', 'Gohir.D03G044950' => 'ghi', 'Gohir.D04G058750' => 'ghi', 'Gohir.D05G323525' => 'ghi', 'Gohir.D06G068800' => 'ghi', 'Gohir.D07G095300' => 'ghi', 'Gohir.D08G024601' => 'ghi', 'Gohir.D08G265250' => 'ghi', 'Gohir.D09G127750' => 'ghi', 'Gohir.D09G190800' => 'ghi', 'Gohir.D11G148000' => 'ghi', 'Gohir.D12G032850' => 'ghi', 'Gohir.D13G190966' => 'ghi', 'Gorai.001G102600' => 'gra', 'Gorai.001G229000' => 'gra', 'Gorai.004G283200' => 'gra', 'Gorai.006G213600' => 'gra', 'Gorai.007G158700' => 'gra', 'Gorai.010G080400' => 'gra', 'GSVIVG01004706001' => 'vvi', 'GSVIVG01005287001' => 'vvi', 'GSVIVG01006160001' => 'vvi', 'GSVIVG01013293001' => 'vvi', 'GSVIVG01013821001' => 'vvi', 'GSVIVG01015254001' => 'vvi', 'GSVIVG01023072001' => 'vvi', 'GSVIVG01036115001' => 'vvi', 'HanXRQChr01g0007201' => 'han', 'HanXRQChr01g0030431' => 'han', 'HanXRQChr01g0030441' => 'han', 'HanXRQChr02g0044331' => 'han', 'HanXRQChr03g0087741' => 'han', 'HanXRQChr09g0272701' => 'han', 'HanXRQChr10g0302421' => 'han', 'Haze_03309' => 'cav', 'Haze_07912' => 'cav', 'Haze_25863' => 'cav', 'Hma1.2p1_0098F.1_g048310' => 'hma', 'Hma1.2p1_0405F.1_g145890' => 'hma', 'Hma1.2p1_0663F.1_g198630' => 'hma', 'Hma1.2p1_0663F.1_g198640' => 'hma', 'Hma1.2p1_0781F.1_g216870' => 'hma', 'Hma1.2p1_0982F.1_g243950' => 'hma', 'Hma1.2p1_1074F.1_g254420' => 'hma', 'Hma1.2p1_1172F.1_g263620' => 'hma', 'HPP92_009933' => 'vpl', 'HPP92_014487' => 'vpl', 'HPP92_014488' => 'vpl', 'HPP92_017206' => 'vpl', 'Hund05600' => 'sun', 'Hund14538' => 'sun', 'Hund18486' => 'sun', 'Lalb_Chr09g0330101' => 'lal', 'Lalb_Chr13g0291011' => 'lal', 'Lalb_Chr22g0349811' => 'lal', 'Lj2A1118T68' => 'lonja', 'Lj2C218G3' => 'lonja', 'Lj3g0000697' => 'lja', 'Lj3g0000727' => 'lja', 'Lj4g0012236' => 'lja', 'Lj4g0018864' => 'lja', 'Lj7A670G56' => 'lonja', 'Lsat_1_v5_gn_2_85561' => 'lsa', 'Lsat_1_v5_gn_5_178460' => 'lsa', 'Lsat_1_v5_gn_6_106580' => 'lsa', 'Lsat_1_v5_gn_6_90981' => 'lsa', 'Manes.01G080800' => 'mes', 'Manes.03G030200' => 'mes', 'Manes.12G052400' => 'mes', 'Manes.13G053400' => 'mes', 'Mapoly0043s0090' => 'mpo', 'Mapoly0056s0024' => 'mpo', 'MBI01_g14455_MAGBIO' => 'mbi', 'MBI04_g09502_MAGBIO' => 'mbi', 'MBI04_g46437_MAGBIO' => 'mbi', 'MBI07_g21332_MAGBIO' => 'mbi', 'MBI13_g35418_MAGBIO' => 'mbi', 'MCO02G171' => 'mco', 'MCO16G231' => 'mco', 'MD01G1115900' => 'mdo', 'MD03G1251800' => 'mdo', 'MD05G1158600' => 'mdo', 'MD05G1163500' => 'mdo', 'MD06G1059300' => 'mdo', 'MD10G1153300' => 'mdo', 'MD11G1273000' => 'mdo', 'Medtr4g100920' => 'mtr', 'Medtr7g101050' => 'mtr', 'Medtr8g011530' => 'mtr', 'Medtr8g102050' => 'mtr', 'MELO3C013939.2' => 'cme', 'MELO3C015385.2' => 'cme', 'MELO3C021113.2' => 'cme', 'Migut.A00956' => 'egut', 'Migut.D02469' => 'egut', 'Migut.J00435' => 'egut', 'MSTRG.18811' => 'ama', 'MSTRG.25522' => 'ama', 'MSTRG.6035' => 'ama', 'Nitab4.5_0000001g0370' => 'nta', 'Nitab4.5_0000038g0050' => 'nta', 'Nitab4.5_0001093g0080' => 'nta', 'Nitab4.5_0001495g0030' => 'nta', 'Nitab4.5_0002445g0030' => 'nta', 'Nitab4.5_0007717g0040' => 'nta', 'Nitab4.5_0010147g0010' => 'nta', 'Nitab4.5_0010347g0010' => 'nta', 'Nn1g06240' => 'nnu', 'Nn1g06241' => 'nnu', 'Nn1g08070' => 'nnu', 'Nn5g28583' => 'nnu', 'Nn6g33956' => 'nnu', 'Nn8g38968' => 'nnu', 'Oeu000333.1' => 'oeu', 'Oeu002335.1' => 'oeu', 'Oeu021466.2' => 'oeu', 'Oeu040200.1' => 'oeu', 'Oeu040201.1' => 'oeu', 'Oeu057846.1' => 'oeu', 'Os01g0372700' => 'osa', 'Os07g0485400' => 'osa', 'Os12g0414500' => 'osa', 'Peaxi162Scf00054g00197' => 'pax', 'Peaxi162Scf00076g00920' => 'pax', 'Peaxi162Scf00171g00129' => 'pax', 'Peaxi162Scf00249g00062' => 'pax', 'Peaxi162Scf00761g00051' => 'pax', 'PGR031G3009' => 'pgr', 'PGR083G1253' => 'pgr', 'PGR087G0003' => 'pgr', 'PGR102G2619' => 'pgr', 'PGR142G2819' => 'pgr', 'PGSC0003DMG400015215' => 'stu', 'PGSC0003DMG400022055' => 'stu', 'PGSC0003DMG400023661' => 'stu', 'Phvul.002G305800' => 'pvu', 'Phvul.003G220700' => 'pvu', 'Phvul.010G030800' => 'pvu', 'Potri.002G249700' => 'ptr', 'Potri.006G153900' => 'ptr', 'Potri.007G129800' => 'ptr', 'Potri.017G028800' => 'ptr', 'Potri.018G070000' => 'ptr', 'Pp3c12_7710' => 'ppa', 'Pp3c12_7760' => 'ppa', 'Pp3c1_35170' => 'ppa', 'Pp3c4_19930' => 'ppa', 'PRCOL_00000766' => 'pco', 'PRCOL_00005888' => 'pco', 'Prupe.4G154500' => 'ppe', 'Prupe.5G070100' => 'ppe', 'Prupe.7G068600' => 'ppe', 'Prupe.8G192100' => 'ppe', 'Psat0s4060g0160' => 'psa', 'Psat4g072280' => 'psa', 'Psat7g018640' => 'psa', 'PSO017G6102' => 'pso', 'PSO063G3523' => 'pso', 'PSO063G4989' => 'pso', 'PSO339G5537' => 'pso', 'PSO384G2227' => 'pso', 'PSO386G0259' => 'pso', 'PSO675G2310' => 'pso', 'PSO832G0327' => 'pso', 'QL02p064866' => 'qlo', 'QL07p040810' => 'qlo', 'QL09p045845' => 'qlo', 'QL12p012099' => 'qlo', 'QL12p012112' => 'qlo', 'RcHm_v2.0_Chr2g0123321' => 'rch', 'RcHm_v2.0_Chr5g0028961' => 'rch', 'RcHm_v2.0_Chr6g0283201' => 'rch', 'RcHm_v2.0_Chr7g0228441' => 'rch', 'Rhsim05G0030300' => 'rsi', 'Rhsim05G0030500' => 'rsi', 'Rhsim05G0030800' => 'rsi', 'Rhsim05G0031100' => 'rsi', 'Rhsim06G0183900' => 'rsi', 'Rhsim13G0052000' => 'rsi', 'Sabra02G0190200' => 'sbr', 'Sabra06G0122100' => 'sbr', 'Sabra07G0105700' => 'sbr', 'Sabra17G0017400' => 'sbr', 'Sabra18G0061300' => 'sbr', 'SalBow6G0445' => 'sbo', 'SalBow6G0463' => 'sbo', 'SalBow6G1251' => 'sbo', 'Sc01g0008430' => 'sci', 'Sc08g0008220' => 'sci', 'Sc17g0001800' => 'sci', 'Sed0005108' => 'sed', 'Sed0006747' => 'sed', 'Sed0018812' => 'sed', 'Sed0023162' => 'sed', 'SEGI_12064' => 'sgi', 'SGA_v2.0_scaffold144G35946' => 'sas', 'SGA_v2.0_scaffold170G38769' => 'sas', 'SGA_v2.0_scaffold62G21572' => 'sas', 'SGA_v2.0_scaffold7G04024' => 'sas', 'SMO116G0372' => 'smo', 'SMO165G0027' => 'smo', 'Solyc03g019940.4' => 'sly', 'Solyc09g057950.3' => 'sly', 'Solyc10g080710.2' => 'sly', 'Sopen03g029680' => 'spe', 'Sopen09g020120' => 'spe', 'Sopen10g031250' => 'spe', 'Sp3g06340' => 'spa', 'Sp6g18450' => 'spa', 'Sp7g16870' => 'spa', 'TAR624G0867' => 'tar', 'TAR626G0430' => 'tar', 'TAR633G0582' => 'tar', 'TAR636G2634' => 'tar', 'TAR636G3225' => 'tar', 'THA.LOC104809571' => 'tha', 'THA.LOC104811732' => 'tha', 'THA.LOC104813487' => 'tha', 'THA.LOC104822528' => 'tha', 'Thecc.01G212500' => 'tca', 'Thecc.03G250800' => 'tca', 'Thecc.09G095000' => 'tca', 'Thhalv10000517m.g' => 'esa', 'Thhalv10013096m.g' => 'esa', 'Thhalv10020277m.g' => 'esa', 'Thhalv10024799m.g' => 'esa', 'TPR.G2045' => 'tpr', 'TPR.G25444' => 'tpr', 'TPR.G37633' => 'tpr', 'TWI32G0576' => 'twi', 'TWI36G0799' => 'twi', 'TWI60G0922' => 'twi', 'TWI63G1460' => 'twi', 'TWI75G0503' => 'twi', 'TWI81G0455' => 'twi', 'unitig_22.g5224' => 'ugi', 'unitig_61.g26184' => 'ugi', 'unitig_8.g3697' => 'ugi', 'unitig_899.g15394' => 'ugi', 'vmacro02810' => 'vma', 'vmacro07309' => 'vma', 'vmacro12026' => 'vma', 'VMungo0251G0807' => 'vmu', 'VMungo0251G2154' => 'vmu', 'VMungo0331G0097' => 'vmu', 'VMungo0720G1214' => 'vmu', 'Zm00001eb105060' => 'zma', 'Zm00001eb120130' => 'zma', 'Zm00001eb321560' => 'zma', 'Zm00001eb341390' => 'zma', 'Zm00001eb428260' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001300' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001300' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001300' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001300' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001300', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '483', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p20060' => 'bna', 'A03p13240' => 'bna', 'A03p35240' => 'bna', 'A05p40770' => 'bna', 'A08p12980' => 'bna', 'A10p14040' => 'bna', 'A10p14550' => 'bna', 'Aa31LG3G12520' => 'aar', 'Aa31LG5G17990' => 'aar', 'Aa31LG6G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3265' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4475' => 'aag', 'Actinidia02135' => 'ach', 'Actinidia23363' => 'ach', 'Actinidia25280' => 'ach', 'Actinidia30022' => 'ach', 'Actinidia39751' => 'ach', 'Ah.01g002430' => 'amhyb', 'Ah.01g002480' => 'amhyb', 'Ah.01g014750' => 'amhyb', 'Ah.08g218710' => 'amhyb', 'AL239U10010' => 'aly', 'AL2G27280' => 'aly', 'AL2G30930' => 'aly', 'AL3G18720' => 'aly', 'AL7G37410' => 'aly', 'AL8G32490' => 'aly', 'Aqoxy206s002' => 'aox', 'Aqoxy3G02643' => 'aox', 'Aqoxy5G01840' => 'aox', 'Aqoxy5G03483' => 'aox', 'arahy.Tifrunner.gnm1.ann1.24DBAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DM8EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4908EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZG50Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNY53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUH36G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPEJ84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVQ67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N58NZT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF6M8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI6YU' => 'arhy', 'AT1G68420' => 'ath', 'AT1G70980' => 'ath', 'AT3G07420' => 'ath', 'AT4G17300' => 'ath', 'AT5G38750' => 'ath', 'AT5G56680' => 'ath', 'ATR0564G320' => 'atr', 'ATR0564G540' => 'atr', 'ATR0609G037' => 'atr', 'Atru.chr10.1120' => 'acertr', 'Atru.chr12.300' => 'acertr', 'Atru.chr12.337' => 'acertr', 'Atru.chr6.1601' => 'acertr', 'Atru.chr6.1602' => 'acertr', 'Atru.chr6.1603' => 'acertr', 'Atru.chr7.1517' => 'acertr', 'AUR62001197' => 'cqu', 'AUR62007517' => 'cqu', 'AUR62007518' => 'cqu', 'AUR62022131' => 'cqu', 'AUR62031634' => 'cqu', 'AUR62038865' => 'cqu', 'AUR62042796' => 'cqu', 'AUR62044033' => 'cqu', 'BcaB01g04415' => 'bca', 'BcaB03g14703' => 'bca', 'BcaB03g16269' => 'bca', 'BcaB04g18409' => 'bca', 'BcaB08g36069' => 'bca', 'BcaB08g36074' => 'bca', 'BcaC01g04284' => 'bca', 'BcaC01g04286' => 'bca', 'BcaC01g06442' => 'bca', 'BcaC04g19994' => 'bca', 'BcaC04g20061' => 'bca', 'BcaC05g29534' => 'bca', 'BcaC07g38041' => 'bca', 'BcaC07g38044' => 'bca', 'BcaC09g50462' => 'bca', 'BcaNung00103' => 'bca', 'BolC1t02469H' => 'bol', 'BolC3t13989H' => 'bol', 'BolC3t16552H' => 'bol', 'BolC3t16554H' => 'bol', 'BolC5t34642H' => 'bol', 'BolC8t48447H' => 'bol', 'BolC9t57677H' => 'bol', 'BolC9t57750H' => 'bol', 'BraA01t01930Z' => 'bra', 'BraA03t10636Z' => 'bra', 'BraA03t12702Z' => 'bra', 'BraA05t22808Z' => 'bra', 'BraA08t33281Z' => 'bra', 'BraA10t43495Z' => 'bra', 'BraA10t43542Z' => 'bra', 'C01p25200' => 'bna', 'C03p15510' => 'bna', 'C03p42840' => 'bna', 'C03p42860' => 'bna', 'C05p59880' => 'bna', 'C09p48270' => 'bna', 'C09p48990' => 'bna', 'CAN.G128.65' => 'can', 'CAN.G1398.6' => 'can', 'CAN.G858.2' => 'can', 'CAN.G861.31' => 'can', 'CANSAT01G2555' => 'cansat', 'CANSAT01G2737' => 'cansat', 'CANSAT21G1584' => 'cansat', 'CANSAT56G3149' => 'cansat', 'CARHR000660' => 'chi', 'CARHR082060' => 'chi', 'CARHR223920' => 'chi', 'CARHR270370' => 'chi', 'Carub.0003s0696' => 'cru', 'Carub.0004s0660' => 'cru', 'Carub.0007s2410' => 'cru', 'Carub.0008s1715' => 'cru', 'Ca_17383_v3' => 'car', 'Ca_21967_v3' => 'car', 'Ca_23190_v3' => 'car', 'Ca_29442_v3' => 'car', 'CBR_g12968' => 'cbr', 'CBR_g16969' => 'cbr', 'Cc01_g16270' => 'ccan', 'Cc06_g10910' => 'ccan', 'Cc08_g12390' => 'ccan', 'Cc08_g12400' => 'ccan', 'CDE02G0631' => 'cde', 'CDE02G2296' => 'cde', 'CDE04G0341' => 'cde', 'CDE04G1076' => 'cde', 'CDE04G2234' => 'cde', 'CDE07G1974' => 'cde', 'CDE11G0048' => 'cde', 'Cfa003139' => 'cfa', 'Cfa010334' => 'cfa', 'Cfa012720' => 'cfa', 'Cfa015859' => 'cfa', 'Cfa024979' => 'cfa', 'Ciclev10003532m.g' => 'ccl', 'Ciclev10003760m.g' => 'ccl', 'Ciclev10007872m.g' => 'ccl', 'Ciclev10019519m.g' => 'ccl', 'Ciclev10030394m.g' => 'ccl', 'Ciclev10030945m.g' => 'ccl', 'CiPaw.03G220200' => 'cil', 'CiPaw.11G079300' => 'cil', 'CiPaw.13G053900' => 'cil', 'CiPaw.13G054000' => 'cil', 'CiPaw.14G043000' => 'cil', 'ClCG03G016330' => 'cla', 'ClCG09G008450' => 'cla', 'ClCG10G002680' => 'cla', 'COL.COLO4_04505' => 'col', 'COL.COLO4_18254' => 'col', 'COL.COLO4_18255' => 'col', 'COL.COLO4_30918' => 'col', 'COL.COLO4_37172' => 'col', 'Cpa.g.sc29.159' => 'cpa', 'Cpa.g.sc78.58' => 'cpa', 'Cpa.g.sc8.86' => 'cpa', 'Cre03.g193800' => 'cre', 'CsaV3_1G039630' => 'csa', 'CsaV3_3G002710' => 'csa', 'CsaV3_7G026620' => 'csa', 'CSS0004329' => 'camsi', 'CSS0020095' => 'camsi', 'CSS0034916' => 'camsi', 'CSS0035767' => 'camsi', 'CSS0036126' => 'camsi', 'CSS0047906' => 'camsi', 'CSS0049758' => 'camsi', 'DCAR_004765' => 'dca', 'DCAR_008493' => 'dca', 'DCAR_010685' => 'dca', 'Dinv12802' => 'din', 'Dinv18556' => 'din', 'Dinv28818' => 'din', 'Dinv36728' => 'din', 'Dinv39148' => 'din', 'Dinv42285' => 'din', 'Duzib136G0002' => 'dzi', 'Duzib138G1042' => 'dzi', 'Duzib150G0351' => 'dzi', 'Duzib168G0161' => 'dzi', 'Duzib187G1049' => 'dzi', 'Duzib205G1000' => 'dzi', 'Duzib211G0457' => 'dzi', 'ECA238G1281' => 'eca', 'ECA240G0176' => 'eca', 'ECA240G1278' => 'eca', 'ECA248G0673' => 'eca', 'EL10Ac3g05935' => 'bvu', 'EL10Ac7g17985' => 'bvu', 'EL10Ac9g22659' => 'bvu', 'Eucgr.C00933' => 'egr', 'Eucgr.D02080' => 'egr', 'Eucgr.H00731' => 'egr', 'FAN11G0240' => 'fan', 'FAN15G1547' => 'fan', 'FAN15G2194' => 'fan', 'FAN16G2390' => 'fan', 'FAN17G1474' => 'fan', 'FAN19G2852' => 'fan', 'FAN21G3178' => 'fan', 'FAN24G3292' => 'fan', 'FAN25G3143' => 'fan', 'FAN26G2432' => 'fan', 'FAN27G2852' => 'fan', 'FAN28G1286' => 'fan', 'FvH4_1g25310' => 'fve', 'FvH4_2g17960' => 'fve', 'FvH4_3g17430' => 'fve', 'Glyma.03G089300' => 'gma', 'Glyma.05G059500' => 'gma', 'Glyma.05G224000' => 'gma', 'Glyma.08G031100' => 'gma', 'Glyma.16G083800' => 'gma', 'Glyma.17G142000' => 'gma', 'Gohir.A05G210740' => 'ghi', 'Gohir.A05G210760' => 'ghi', 'Gohir.A05G210780' => 'ghi', 'Gohir.A06G046750' => 'ghi', 'Gohir.A06G070200' => 'ghi', 'Gohir.A07G090600' => 'ghi', 'Gohir.A07G197066' => 'ghi', 'Gohir.A08G244350' => 'ghi', 'Gohir.A09G196200' => 'ghi', 'Gohir.A11G141700' => 'ghi', 'Gohir.A11G230302' => 'ghi', 'Gohir.D03G044950' => 'ghi', 'Gohir.D04G058750' => 'ghi', 'Gohir.D05G323525' => 'ghi', 'Gohir.D06G068800' => 'ghi', 'Gohir.D07G095300' => 'ghi', 'Gohir.D08G024601' => 'ghi', 'Gohir.D08G265250' => 'ghi', 'Gohir.D09G127750' => 'ghi', 'Gohir.D09G190800' => 'ghi', 'Gohir.D11G148000' => 'ghi', 'Gohir.D12G032850' => 'ghi', 'Gohir.D13G190966' => 'ghi', 'Gorai.001G102600' => 'gra', 'Gorai.001G229000' => 'gra', 'Gorai.004G283200' => 'gra', 'Gorai.006G213600' => 'gra', 'Gorai.007G158700' => 'gra', 'Gorai.010G080400' => 'gra', 'GSVIVG01004706001' => 'vvi', 'GSVIVG01005287001' => 'vvi', 'GSVIVG01006160001' => 'vvi', 'GSVIVG01013293001' => 'vvi', 'GSVIVG01013821001' => 'vvi', 'GSVIVG01015254001' => 'vvi', 'GSVIVG01023072001' => 'vvi', 'GSVIVG01036115001' => 'vvi', 'HanXRQChr01g0007201' => 'han', 'HanXRQChr01g0030431' => 'han', 'HanXRQChr01g0030441' => 'han', 'HanXRQChr02g0044331' => 'han', 'HanXRQChr03g0087741' => 'han', 'HanXRQChr09g0272701' => 'han', 'HanXRQChr10g0302421' => 'han', 'Haze_03309' => 'cav', 'Haze_07912' => 'cav', 'Haze_25863' => 'cav', 'Hma1.2p1_0098F.1_g048310' => 'hma', 'Hma1.2p1_0405F.1_g145890' => 'hma', 'Hma1.2p1_0663F.1_g198630' => 'hma', 'Hma1.2p1_0663F.1_g198640' => 'hma', 'Hma1.2p1_0781F.1_g216870' => 'hma', 'Hma1.2p1_0982F.1_g243950' => 'hma', 'Hma1.2p1_1074F.1_g254420' => 'hma', 'Hma1.2p1_1172F.1_g263620' => 'hma', 'HPP92_009933' => 'vpl', 'HPP92_014487' => 'vpl', 'HPP92_014488' => 'vpl', 'HPP92_017206' => 'vpl', 'Hund05600' => 'sun', 'Hund14538' => 'sun', 'Hund18486' => 'sun', 'Lalb_Chr09g0330101' => 'lal', 'Lalb_Chr13g0291011' => 'lal', 'Lalb_Chr22g0349811' => 'lal', 'Lj2A1118T68' => 'lonja', 'Lj2C218G3' => 'lonja', 'Lj3g0000697' => 'lja', 'Lj3g0000727' => 'lja', 'Lj4g0012236' => 'lja', 'Lj4g0018864' => 'lja', 'Lj7A670G56' => 'lonja', 'Lsat_1_v5_gn_2_85561' => 'lsa', 'Lsat_1_v5_gn_5_178460' => 'lsa', 'Lsat_1_v5_gn_6_106580' => 'lsa', 'Lsat_1_v5_gn_6_90981' => 'lsa', 'Manes.01G080800' => 'mes', 'Manes.03G030200' => 'mes', 'Manes.12G052400' => 'mes', 'Manes.13G053400' => 'mes', 'Mapoly0043s0090' => 'mpo', 'Mapoly0056s0024' => 'mpo', 'MBI01_g14455_MAGBIO' => 'mbi', 'MBI04_g09502_MAGBIO' => 'mbi', 'MBI04_g46437_MAGBIO' => 'mbi', 'MBI07_g21332_MAGBIO' => 'mbi', 'MBI13_g35418_MAGBIO' => 'mbi', 'MCO02G171' => 'mco', 'MCO16G231' => 'mco', 'MD01G1115900' => 'mdo', 'MD03G1251800' => 'mdo', 'MD05G1158600' => 'mdo', 'MD05G1163500' => 'mdo', 'MD06G1059300' => 'mdo', 'MD10G1153300' => 'mdo', 'MD11G1273000' => 'mdo', 'Medtr4g100920' => 'mtr', 'Medtr7g101050' => 'mtr', 'Medtr8g011530' => 'mtr', 'Medtr8g102050' => 'mtr', 'MELO3C013939.2' => 'cme', 'MELO3C015385.2' => 'cme', 'MELO3C021113.2' => 'cme', 'Migut.A00956' => 'egut', 'Migut.D02469' => 'egut', 'Migut.J00435' => 'egut', 'MSTRG.18811' => 'ama', 'MSTRG.25522' => 'ama', 'MSTRG.6035' => 'ama', 'Nitab4.5_0000001g0370' => 'nta', 'Nitab4.5_0000038g0050' => 'nta', 'Nitab4.5_0001093g0080' => 'nta', 'Nitab4.5_0001495g0030' => 'nta', 'Nitab4.5_0002445g0030' => 'nta', 'Nitab4.5_0007717g0040' => 'nta', 'Nitab4.5_0010147g0010' => 'nta', 'Nitab4.5_0010347g0010' => 'nta', 'Nn1g06240' => 'nnu', 'Nn1g06241' => 'nnu', 'Nn1g08070' => 'nnu', 'Nn5g28583' => 'nnu', 'Nn6g33956' => 'nnu', 'Nn8g38968' => 'nnu', 'Oeu000333.1' => 'oeu', 'Oeu002335.1' => 'oeu', 'Oeu021466.2' => 'oeu', 'Oeu040200.1' => 'oeu', 'Oeu040201.1' => 'oeu', 'Oeu057846.1' => 'oeu', 'Os01g0372700' => 'osa', 'Os07g0485400' => 'osa', 'Os12g0414500' => 'osa', 'Peaxi162Scf00054g00197' => 'pax', 'Peaxi162Scf00076g00920' => 'pax', 'Peaxi162Scf00171g00129' => 'pax', 'Peaxi162Scf00249g00062' => 'pax', 'Peaxi162Scf00761g00051' => 'pax', 'PGR031G3009' => 'pgr', 'PGR083G1253' => 'pgr', 'PGR087G0003' => 'pgr', 'PGR102G2619' => 'pgr', 'PGR142G2819' => 'pgr', 'PGSC0003DMG400015215' => 'stu', 'PGSC0003DMG400022055' => 'stu', 'PGSC0003DMG400023661' => 'stu', 'Phvul.002G305800' => 'pvu', 'Phvul.003G220700' => 'pvu', 'Phvul.010G030800' => 'pvu', 'Potri.002G249700' => 'ptr', 'Potri.006G153900' => 'ptr', 'Potri.007G129800' => 'ptr', 'Potri.017G028800' => 'ptr', 'Potri.018G070000' => 'ptr', 'Pp3c12_7710' => 'ppa', 'Pp3c12_7760' => 'ppa', 'Pp3c1_35170' => 'ppa', 'Pp3c4_19930' => 'ppa', 'PRCOL_00000766' => 'pco', 'PRCOL_00005888' => 'pco', 'Prupe.4G154500' => 'ppe', 'Prupe.5G070100' => 'ppe', 'Prupe.7G068600' => 'ppe', 'Prupe.8G192100' => 'ppe', 'Psat0s4060g0160' => 'psa', 'Psat4g072280' => 'psa', 'Psat7g018640' => 'psa', 'PSO017G6102' => 'pso', 'PSO063G3523' => 'pso', 'PSO063G4989' => 'pso', 'PSO339G5537' => 'pso', 'PSO384G2227' => 'pso', 'PSO386G0259' => 'pso', 'PSO675G2310' => 'pso', 'PSO832G0327' => 'pso', 'QL02p064866' => 'qlo', 'QL07p040810' => 'qlo', 'QL09p045845' => 'qlo', 'QL12p012099' => 'qlo', 'QL12p012112' => 'qlo', 'RcHm_v2.0_Chr2g0123321' => 'rch', 'RcHm_v2.0_Chr5g0028961' => 'rch', 'RcHm_v2.0_Chr6g0283201' => 'rch', 'RcHm_v2.0_Chr7g0228441' => 'rch', 'Rhsim05G0030300' => 'rsi', 'Rhsim05G0030500' => 'rsi', 'Rhsim05G0030800' => 'rsi', 'Rhsim05G0031100' => 'rsi', 'Rhsim06G0183900' => 'rsi', 'Rhsim13G0052000' => 'rsi', 'Sabra02G0190200' => 'sbr', 'Sabra06G0122100' => 'sbr', 'Sabra07G0105700' => 'sbr', 'Sabra17G0017400' => 'sbr', 'Sabra18G0061300' => 'sbr', 'SalBow6G0445' => 'sbo', 'SalBow6G0463' => 'sbo', 'SalBow6G1251' => 'sbo', 'Sc01g0008430' => 'sci', 'Sc08g0008220' => 'sci', 'Sc17g0001800' => 'sci', 'Sed0005108' => 'sed', 'Sed0006747' => 'sed', 'Sed0018812' => 'sed', 'Sed0023162' => 'sed', 'SEGI_12064' => 'sgi', 'SGA_v2.0_scaffold144G35946' => 'sas', 'SGA_v2.0_scaffold170G38769' => 'sas', 'SGA_v2.0_scaffold62G21572' => 'sas', 'SGA_v2.0_scaffold7G04024' => 'sas', 'SMO116G0372' => 'smo', 'SMO165G0027' => 'smo', 'Solyc03g019940.4' => 'sly', 'Solyc09g057950.3' => 'sly', 'Solyc10g080710.2' => 'sly', 'Sopen03g029680' => 'spe', 'Sopen09g020120' => 'spe', 'Sopen10g031250' => 'spe', 'Sp3g06340' => 'spa', 'Sp6g18450' => 'spa', 'Sp7g16870' => 'spa', 'TAR624G0867' => 'tar', 'TAR626G0430' => 'tar', 'TAR633G0582' => 'tar', 'TAR636G2634' => 'tar', 'TAR636G3225' => 'tar', 'THA.LOC104809571' => 'tha', 'THA.LOC104811732' => 'tha', 'THA.LOC104813487' => 'tha', 'THA.LOC104822528' => 'tha', 'Thecc.01G212500' => 'tca', 'Thecc.03G250800' => 'tca', 'Thecc.09G095000' => 'tca', 'Thhalv10000517m.g' => 'esa', 'Thhalv10013096m.g' => 'esa', 'Thhalv10020277m.g' => 'esa', 'Thhalv10024799m.g' => 'esa', 'TPR.G2045' => 'tpr', 'TPR.G25444' => 'tpr', 'TPR.G37633' => 'tpr', 'TWI32G0576' => 'twi', 'TWI36G0799' => 'twi', 'TWI60G0922' => 'twi', 'TWI63G1460' => 'twi', 'TWI75G0503' => 'twi', 'TWI81G0455' => 'twi', 'unitig_22.g5224' => 'ugi', 'unitig_61.g26184' => 'ugi', 'unitig_8.g3697' => 'ugi', 'unitig_899.g15394' => 'ugi', 'vmacro02810' => 'vma', 'vmacro07309' => 'vma', 'vmacro12026' => 'vma', 'VMungo0251G0807' => 'vmu', 'VMungo0251G2154' => 'vmu', 'VMungo0331G0097' => 'vmu', 'VMungo0720G1214' => 'vmu', 'Zm00001eb105060' => 'zma', 'Zm00001eb120130' => 'zma', 'Zm00001eb321560' => 'zma', 'Zm00001eb341390' => 'zma', 'Zm00001eb428260' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001300', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001300' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001300', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '483', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001300' ) ), 'genes' => array( 'A01p20060' => 'bna', 'A03p13240' => 'bna', 'A03p35240' => 'bna', 'A05p40770' => 'bna', 'A08p12980' => 'bna', 'A10p14040' => 'bna', 'A10p14550' => 'bna', 'Aa31LG3G12520' => 'aar', 'Aa31LG5G17990' => 'aar', 'Aa31LG6G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3265' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4475' => 'aag', 'Actinidia02135' => 'ach', 'Actinidia23363' => 'ach', 'Actinidia25280' => 'ach', 'Actinidia30022' => 'ach', 'Actinidia39751' => 'ach', 'Ah.01g002430' => 'amhyb', 'Ah.01g002480' => 'amhyb', 'Ah.01g014750' => 'amhyb', 'Ah.08g218710' => 'amhyb', 'AL239U10010' => 'aly', 'AL2G27280' => 'aly', 'AL2G30930' => 'aly', 'AL3G18720' => 'aly', 'AL7G37410' => 'aly', 'AL8G32490' => 'aly', 'Aqoxy206s002' => 'aox', 'Aqoxy3G02643' => 'aox', 'Aqoxy5G01840' => 'aox', 'Aqoxy5G03483' => 'aox', 'arahy.Tifrunner.gnm1.ann1.24DBAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DM8EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4908EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZG50Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNY53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUH36G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPEJ84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVQ67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N58NZT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF6M8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI6YU' => 'arhy', 'AT1G68420' => 'ath', 'AT1G70980' => 'ath', 'AT3G07420' => 'ath', 'AT4G17300' => 'ath', 'AT5G38750' => 'ath', 'AT5G56680' => 'ath', 'ATR0564G320' => 'atr', 'ATR0564G540' => 'atr', 'ATR0609G037' => 'atr', 'Atru.chr10.1120' => 'acertr', 'Atru.chr12.300' => 'acertr', 'Atru.chr12.337' => 'acertr', 'Atru.chr6.1601' => 'acertr', 'Atru.chr6.1602' => 'acertr', 'Atru.chr6.1603' => 'acertr', 'Atru.chr7.1517' => 'acertr', 'AUR62001197' => 'cqu', 'AUR62007517' => 'cqu', 'AUR62007518' => 'cqu', 'AUR62022131' => 'cqu', 'AUR62031634' => 'cqu', 'AUR62038865' => 'cqu', 'AUR62042796' => 'cqu', 'AUR62044033' => 'cqu', 'BcaB01g04415' => 'bca', 'BcaB03g14703' => 'bca', 'BcaB03g16269' => 'bca', 'BcaB04g18409' => 'bca', 'BcaB08g36069' => 'bca', 'BcaB08g36074' => 'bca', 'BcaC01g04284' => 'bca', 'BcaC01g04286' => 'bca', 'BcaC01g06442' => 'bca', 'BcaC04g19994' => 'bca', 'BcaC04g20061' => 'bca', 'BcaC05g29534' => 'bca', 'BcaC07g38041' => 'bca', 'BcaC07g38044' => 'bca', 'BcaC09g50462' => 'bca', 'BcaNung00103' => 'bca', 'BolC1t02469H' => 'bol', 'BolC3t13989H' => 'bol', 'BolC3t16552H' => 'bol', 'BolC3t16554H' => 'bol', 'BolC5t34642H' => 'bol', 'BolC8t48447H' => 'bol', 'BolC9t57677H' => 'bol', 'BolC9t57750H' => 'bol', 'BraA01t01930Z' => 'bra', 'BraA03t10636Z' => 'bra', 'BraA03t12702Z' => 'bra', 'BraA05t22808Z' => 'bra', 'BraA08t33281Z' => 'bra', 'BraA10t43495Z' => 'bra', 'BraA10t43542Z' => 'bra', 'C01p25200' => 'bna', 'C03p15510' => 'bna', 'C03p42840' => 'bna', 'C03p42860' => 'bna', 'C05p59880' => 'bna', 'C09p48270' => 'bna', 'C09p48990' => 'bna', 'CAN.G128.65' => 'can', 'CAN.G1398.6' => 'can', 'CAN.G858.2' => 'can', 'CAN.G861.31' => 'can', 'CANSAT01G2555' => 'cansat', 'CANSAT01G2737' => 'cansat', 'CANSAT21G1584' => 'cansat', 'CANSAT56G3149' => 'cansat', 'CARHR000660' => 'chi', 'CARHR082060' => 'chi', 'CARHR223920' => 'chi', 'CARHR270370' => 'chi', 'Carub.0003s0696' => 'cru', 'Carub.0004s0660' => 'cru', 'Carub.0007s2410' => 'cru', 'Carub.0008s1715' => 'cru', 'Ca_17383_v3' => 'car', 'Ca_21967_v3' => 'car', 'Ca_23190_v3' => 'car', 'Ca_29442_v3' => 'car', 'CBR_g12968' => 'cbr', 'CBR_g16969' => 'cbr', 'Cc01_g16270' => 'ccan', 'Cc06_g10910' => 'ccan', 'Cc08_g12390' => 'ccan', 'Cc08_g12400' => 'ccan', 'CDE02G0631' => 'cde', 'CDE02G2296' => 'cde', 'CDE04G0341' => 'cde', 'CDE04G1076' => 'cde', 'CDE04G2234' => 'cde', 'CDE07G1974' => 'cde', 'CDE11G0048' => 'cde', 'Cfa003139' => 'cfa', 'Cfa010334' => 'cfa', 'Cfa012720' => 'cfa', 'Cfa015859' => 'cfa', 'Cfa024979' => 'cfa', 'Ciclev10003532m.g' => 'ccl', 'Ciclev10003760m.g' => 'ccl', 'Ciclev10007872m.g' => 'ccl', 'Ciclev10019519m.g' => 'ccl', 'Ciclev10030394m.g' => 'ccl', 'Ciclev10030945m.g' => 'ccl', 'CiPaw.03G220200' => 'cil', 'CiPaw.11G079300' => 'cil', 'CiPaw.13G053900' => 'cil', 'CiPaw.13G054000' => 'cil', 'CiPaw.14G043000' => 'cil', 'ClCG03G016330' => 'cla', 'ClCG09G008450' => 'cla', 'ClCG10G002680' => 'cla', 'COL.COLO4_04505' => 'col', 'COL.COLO4_18254' => 'col', 'COL.COLO4_18255' => 'col', 'COL.COLO4_30918' => 'col', 'COL.COLO4_37172' => 'col', 'Cpa.g.sc29.159' => 'cpa', 'Cpa.g.sc78.58' => 'cpa', 'Cpa.g.sc8.86' => 'cpa', 'Cre03.g193800' => 'cre', 'CsaV3_1G039630' => 'csa', 'CsaV3_3G002710' => 'csa', 'CsaV3_7G026620' => 'csa', 'CSS0004329' => 'camsi', 'CSS0020095' => 'camsi', 'CSS0034916' => 'camsi', 'CSS0035767' => 'camsi', 'CSS0036126' => 'camsi', 'CSS0047906' => 'camsi', 'CSS0049758' => 'camsi', 'DCAR_004765' => 'dca', 'DCAR_008493' => 'dca', 'DCAR_010685' => 'dca', 'Dinv12802' => 'din', 'Dinv18556' => 'din', 'Dinv28818' => 'din', 'Dinv36728' => 'din', 'Dinv39148' => 'din', 'Dinv42285' => 'din', 'Duzib136G0002' => 'dzi', 'Duzib138G1042' => 'dzi', 'Duzib150G0351' => 'dzi', 'Duzib168G0161' => 'dzi', 'Duzib187G1049' => 'dzi', 'Duzib205G1000' => 'dzi', 'Duzib211G0457' => 'dzi', 'ECA238G1281' => 'eca', 'ECA240G0176' => 'eca', 'ECA240G1278' => 'eca', 'ECA248G0673' => 'eca', 'EL10Ac3g05935' => 'bvu', 'EL10Ac7g17985' => 'bvu', 'EL10Ac9g22659' => 'bvu', 'Eucgr.C00933' => 'egr', 'Eucgr.D02080' => 'egr', 'Eucgr.H00731' => 'egr', 'FAN11G0240' => 'fan', 'FAN15G1547' => 'fan', 'FAN15G2194' => 'fan', 'FAN16G2390' => 'fan', 'FAN17G1474' => 'fan', 'FAN19G2852' => 'fan', 'FAN21G3178' => 'fan', 'FAN24G3292' => 'fan', 'FAN25G3143' => 'fan', 'FAN26G2432' => 'fan', 'FAN27G2852' => 'fan', 'FAN28G1286' => 'fan', 'FvH4_1g25310' => 'fve', 'FvH4_2g17960' => 'fve', 'FvH4_3g17430' => 'fve', 'Glyma.03G089300' => 'gma', 'Glyma.05G059500' => 'gma', 'Glyma.05G224000' => 'gma', 'Glyma.08G031100' => 'gma', 'Glyma.16G083800' => 'gma', 'Glyma.17G142000' => 'gma', 'Gohir.A05G210740' => 'ghi', 'Gohir.A05G210760' => 'ghi', 'Gohir.A05G210780' => 'ghi', 'Gohir.A06G046750' => 'ghi', 'Gohir.A06G070200' => 'ghi', 'Gohir.A07G090600' => 'ghi', 'Gohir.A07G197066' => 'ghi', 'Gohir.A08G244350' => 'ghi', 'Gohir.A09G196200' => 'ghi', 'Gohir.A11G141700' => 'ghi', 'Gohir.A11G230302' => 'ghi', 'Gohir.D03G044950' => 'ghi', 'Gohir.D04G058750' => 'ghi', 'Gohir.D05G323525' => 'ghi', 'Gohir.D06G068800' => 'ghi', 'Gohir.D07G095300' => 'ghi', 'Gohir.D08G024601' => 'ghi', 'Gohir.D08G265250' => 'ghi', 'Gohir.D09G127750' => 'ghi', 'Gohir.D09G190800' => 'ghi', 'Gohir.D11G148000' => 'ghi', 'Gohir.D12G032850' => 'ghi', 'Gohir.D13G190966' => 'ghi', 'Gorai.001G102600' => 'gra', 'Gorai.001G229000' => 'gra', 'Gorai.004G283200' => 'gra', 'Gorai.006G213600' => 'gra', 'Gorai.007G158700' => 'gra', 'Gorai.010G080400' => 'gra', 'GSVIVG01004706001' => 'vvi', 'GSVIVG01005287001' => 'vvi', 'GSVIVG01006160001' => 'vvi', 'GSVIVG01013293001' => 'vvi', 'GSVIVG01013821001' => 'vvi', 'GSVIVG01015254001' => 'vvi', 'GSVIVG01023072001' => 'vvi', 'GSVIVG01036115001' => 'vvi', 'HanXRQChr01g0007201' => 'han', 'HanXRQChr01g0030431' => 'han', 'HanXRQChr01g0030441' => 'han', 'HanXRQChr02g0044331' => 'han', 'HanXRQChr03g0087741' => 'han', 'HanXRQChr09g0272701' => 'han', 'HanXRQChr10g0302421' => 'han', 'Haze_03309' => 'cav', 'Haze_07912' => 'cav', 'Haze_25863' => 'cav', 'Hma1.2p1_0098F.1_g048310' => 'hma', 'Hma1.2p1_0405F.1_g145890' => 'hma', 'Hma1.2p1_0663F.1_g198630' => 'hma', 'Hma1.2p1_0663F.1_g198640' => 'hma', 'Hma1.2p1_0781F.1_g216870' => 'hma', 'Hma1.2p1_0982F.1_g243950' => 'hma', 'Hma1.2p1_1074F.1_g254420' => 'hma', 'Hma1.2p1_1172F.1_g263620' => 'hma', 'HPP92_009933' => 'vpl', 'HPP92_014487' => 'vpl', 'HPP92_014488' => 'vpl', 'HPP92_017206' => 'vpl', 'Hund05600' => 'sun', 'Hund14538' => 'sun', 'Hund18486' => 'sun', 'Lalb_Chr09g0330101' => 'lal', 'Lalb_Chr13g0291011' => 'lal', 'Lalb_Chr22g0349811' => 'lal', 'Lj2A1118T68' => 'lonja', 'Lj2C218G3' => 'lonja', 'Lj3g0000697' => 'lja', 'Lj3g0000727' => 'lja', 'Lj4g0012236' => 'lja', 'Lj4g0018864' => 'lja', 'Lj7A670G56' => 'lonja', 'Lsat_1_v5_gn_2_85561' => 'lsa', 'Lsat_1_v5_gn_5_178460' => 'lsa', 'Lsat_1_v5_gn_6_106580' => 'lsa', 'Lsat_1_v5_gn_6_90981' => 'lsa', 'Manes.01G080800' => 'mes', 'Manes.03G030200' => 'mes', 'Manes.12G052400' => 'mes', 'Manes.13G053400' => 'mes', 'Mapoly0043s0090' => 'mpo', 'Mapoly0056s0024' => 'mpo', 'MBI01_g14455_MAGBIO' => 'mbi', 'MBI04_g09502_MAGBIO' => 'mbi', 'MBI04_g46437_MAGBIO' => 'mbi', 'MBI07_g21332_MAGBIO' => 'mbi', 'MBI13_g35418_MAGBIO' => 'mbi', 'MCO02G171' => 'mco', 'MCO16G231' => 'mco', 'MD01G1115900' => 'mdo', 'MD03G1251800' => 'mdo', 'MD05G1158600' => 'mdo', 'MD05G1163500' => 'mdo', 'MD06G1059300' => 'mdo', 'MD10G1153300' => 'mdo', 'MD11G1273000' => 'mdo', 'Medtr4g100920' => 'mtr', 'Medtr7g101050' => 'mtr', 'Medtr8g011530' => 'mtr', 'Medtr8g102050' => 'mtr', 'MELO3C013939.2' => 'cme', 'MELO3C015385.2' => 'cme', 'MELO3C021113.2' => 'cme', 'Migut.A00956' => 'egut', 'Migut.D02469' => 'egut', 'Migut.J00435' => 'egut', 'MSTRG.18811' => 'ama', 'MSTRG.25522' => 'ama', 'MSTRG.6035' => 'ama', 'Nitab4.5_0000001g0370' => 'nta', 'Nitab4.5_0000038g0050' => 'nta', 'Nitab4.5_0001093g0080' => 'nta', 'Nitab4.5_0001495g0030' => 'nta', 'Nitab4.5_0002445g0030' => 'nta', 'Nitab4.5_0007717g0040' => 'nta', 'Nitab4.5_0010147g0010' => 'nta', 'Nitab4.5_0010347g0010' => 'nta', 'Nn1g06240' => 'nnu', 'Nn1g06241' => 'nnu', 'Nn1g08070' => 'nnu', 'Nn5g28583' => 'nnu', 'Nn6g33956' => 'nnu', 'Nn8g38968' => 'nnu', 'Oeu000333.1' => 'oeu', 'Oeu002335.1' => 'oeu', 'Oeu021466.2' => 'oeu', 'Oeu040200.1' => 'oeu', 'Oeu040201.1' => 'oeu', 'Oeu057846.1' => 'oeu', 'Os01g0372700' => 'osa', 'Os07g0485400' => 'osa', 'Os12g0414500' => 'osa', 'Peaxi162Scf00054g00197' => 'pax', 'Peaxi162Scf00076g00920' => 'pax', 'Peaxi162Scf00171g00129' => 'pax', 'Peaxi162Scf00249g00062' => 'pax', 'Peaxi162Scf00761g00051' => 'pax', 'PGR031G3009' => 'pgr', 'PGR083G1253' => 'pgr', 'PGR087G0003' => 'pgr', 'PGR102G2619' => 'pgr', 'PGR142G2819' => 'pgr', 'PGSC0003DMG400015215' => 'stu', 'PGSC0003DMG400022055' => 'stu', 'PGSC0003DMG400023661' => 'stu', 'Phvul.002G305800' => 'pvu', 'Phvul.003G220700' => 'pvu', 'Phvul.010G030800' => 'pvu', 'Potri.002G249700' => 'ptr', 'Potri.006G153900' => 'ptr', 'Potri.007G129800' => 'ptr', 'Potri.017G028800' => 'ptr', 'Potri.018G070000' => 'ptr', 'Pp3c12_7710' => 'ppa', 'Pp3c12_7760' => 'ppa', 'Pp3c1_35170' => 'ppa', 'Pp3c4_19930' => 'ppa', 'PRCOL_00000766' => 'pco', 'PRCOL_00005888' => 'pco', 'Prupe.4G154500' => 'ppe', 'Prupe.5G070100' => 'ppe', 'Prupe.7G068600' => 'ppe', 'Prupe.8G192100' => 'ppe', 'Psat0s4060g0160' => 'psa', 'Psat4g072280' => 'psa', 'Psat7g018640' => 'psa', 'PSO017G6102' => 'pso', 'PSO063G3523' => 'pso', 'PSO063G4989' => 'pso', 'PSO339G5537' => 'pso', 'PSO384G2227' => 'pso', 'PSO386G0259' => 'pso', 'PSO675G2310' => 'pso', 'PSO832G0327' => 'pso', 'QL02p064866' => 'qlo', 'QL07p040810' => 'qlo', 'QL09p045845' => 'qlo', 'QL12p012099' => 'qlo', 'QL12p012112' => 'qlo', 'RcHm_v2.0_Chr2g0123321' => 'rch', 'RcHm_v2.0_Chr5g0028961' => 'rch', 'RcHm_v2.0_Chr6g0283201' => 'rch', 'RcHm_v2.0_Chr7g0228441' => 'rch', 'Rhsim05G0030300' => 'rsi', 'Rhsim05G0030500' => 'rsi', 'Rhsim05G0030800' => 'rsi', 'Rhsim05G0031100' => 'rsi', 'Rhsim06G0183900' => 'rsi', 'Rhsim13G0052000' => 'rsi', 'Sabra02G0190200' => 'sbr', 'Sabra06G0122100' => 'sbr', 'Sabra07G0105700' => 'sbr', 'Sabra17G0017400' => 'sbr', 'Sabra18G0061300' => 'sbr', 'SalBow6G0445' => 'sbo', 'SalBow6G0463' => 'sbo', 'SalBow6G1251' => 'sbo', 'Sc01g0008430' => 'sci', 'Sc08g0008220' => 'sci', 'Sc17g0001800' => 'sci', 'Sed0005108' => 'sed', 'Sed0006747' => 'sed', 'Sed0018812' => 'sed', 'Sed0023162' => 'sed', 'SEGI_12064' => 'sgi', 'SGA_v2.0_scaffold144G35946' => 'sas', 'SGA_v2.0_scaffold170G38769' => 'sas', 'SGA_v2.0_scaffold62G21572' => 'sas', 'SGA_v2.0_scaffold7G04024' => 'sas', 'SMO116G0372' => 'smo', 'SMO165G0027' => 'smo', 'Solyc03g019940.4' => 'sly', 'Solyc09g057950.3' => 'sly', 'Solyc10g080710.2' => 'sly', 'Sopen03g029680' => 'spe', 'Sopen09g020120' => 'spe', 'Sopen10g031250' => 'spe', 'Sp3g06340' => 'spa', 'Sp6g18450' => 'spa', 'Sp7g16870' => 'spa', 'TAR624G0867' => 'tar', 'TAR626G0430' => 'tar', 'TAR633G0582' => 'tar', 'TAR636G2634' => 'tar', 'TAR636G3225' => 'tar', 'THA.LOC104809571' => 'tha', 'THA.LOC104811732' => 'tha', 'THA.LOC104813487' => 'tha', 'THA.LOC104822528' => 'tha', 'Thecc.01G212500' => 'tca', 'Thecc.03G250800' => 'tca', 'Thecc.09G095000' => 'tca', 'Thhalv10000517m.g' => 'esa', 'Thhalv10013096m.g' => 'esa', 'Thhalv10020277m.g' => 'esa', 'Thhalv10024799m.g' => 'esa', 'TPR.G2045' => 'tpr', 'TPR.G25444' => 'tpr', 'TPR.G37633' => 'tpr', 'TWI32G0576' => 'twi', 'TWI36G0799' => 'twi', 'TWI60G0922' => 'twi', 'TWI63G1460' => 'twi', 'TWI75G0503' => 'twi', 'TWI81G0455' => 'twi', 'unitig_22.g5224' => 'ugi', 'unitig_61.g26184' => 'ugi', 'unitig_8.g3697' => 'ugi', 'unitig_899.g15394' => 'ugi', 'vmacro02810' => 'vma', 'vmacro07309' => 'vma', 'vmacro12026' => 'vma', 'VMungo0251G0807' => 'vmu', 'VMungo0251G2154' => 'vmu', 'VMungo0331G0097' => 'vmu', 'VMungo0720G1214' => 'vmu', 'Zm00001eb105060' => 'zma', 'Zm00001eb120130' => 'zma', 'Zm00001eb321560' => 'zma', 'Zm00001eb341390' => 'zma', 'Zm00001eb428260' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001300' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001300' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001300' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001300' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001300', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '483', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p20060' => 'bna', 'A03p13240' => 'bna', 'A03p35240' => 'bna', 'A05p40770' => 'bna', 'A08p12980' => 'bna', 'A10p14040' => 'bna', 'A10p14550' => 'bna', 'Aa31LG3G12520' => 'aar', 'Aa31LG5G17990' => 'aar', 'Aa31LG6G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3265' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4475' => 'aag', 'Actinidia02135' => 'ach', 'Actinidia23363' => 'ach', 'Actinidia25280' => 'ach', 'Actinidia30022' => 'ach', 'Actinidia39751' => 'ach', 'Ah.01g002430' => 'amhyb', 'Ah.01g002480' => 'amhyb', 'Ah.01g014750' => 'amhyb', 'Ah.08g218710' => 'amhyb', 'AL239U10010' => 'aly', 'AL2G27280' => 'aly', 'AL2G30930' => 'aly', 'AL3G18720' => 'aly', 'AL7G37410' => 'aly', 'AL8G32490' => 'aly', 'Aqoxy206s002' => 'aox', 'Aqoxy3G02643' => 'aox', 'Aqoxy5G01840' => 'aox', 'Aqoxy5G03483' => 'aox', 'arahy.Tifrunner.gnm1.ann1.24DBAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DM8EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4908EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZG50Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNY53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUH36G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPEJ84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVQ67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N58NZT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF6M8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI6YU' => 'arhy', 'AT1G68420' => 'ath', 'AT1G70980' => 'ath', 'AT3G07420' => 'ath', 'AT4G17300' => 'ath', 'AT5G38750' => 'ath', 'AT5G56680' => 'ath', 'ATR0564G320' => 'atr', 'ATR0564G540' => 'atr', 'ATR0609G037' => 'atr', 'Atru.chr10.1120' => 'acertr', 'Atru.chr12.300' => 'acertr', 'Atru.chr12.337' => 'acertr', 'Atru.chr6.1601' => 'acertr', 'Atru.chr6.1602' => 'acertr', 'Atru.chr6.1603' => 'acertr', 'Atru.chr7.1517' => 'acertr', 'AUR62001197' => 'cqu', 'AUR62007517' => 'cqu', 'AUR62007518' => 'cqu', 'AUR62022131' => 'cqu', 'AUR62031634' => 'cqu', 'AUR62038865' => 'cqu', 'AUR62042796' => 'cqu', 'AUR62044033' => 'cqu', 'BcaB01g04415' => 'bca', 'BcaB03g14703' => 'bca', 'BcaB03g16269' => 'bca', 'BcaB04g18409' => 'bca', 'BcaB08g36069' => 'bca', 'BcaB08g36074' => 'bca', 'BcaC01g04284' => 'bca', 'BcaC01g04286' => 'bca', 'BcaC01g06442' => 'bca', 'BcaC04g19994' => 'bca', 'BcaC04g20061' => 'bca', 'BcaC05g29534' => 'bca', 'BcaC07g38041' => 'bca', 'BcaC07g38044' => 'bca', 'BcaC09g50462' => 'bca', 'BcaNung00103' => 'bca', 'BolC1t02469H' => 'bol', 'BolC3t13989H' => 'bol', 'BolC3t16552H' => 'bol', 'BolC3t16554H' => 'bol', 'BolC5t34642H' => 'bol', 'BolC8t48447H' => 'bol', 'BolC9t57677H' => 'bol', 'BolC9t57750H' => 'bol', 'BraA01t01930Z' => 'bra', 'BraA03t10636Z' => 'bra', 'BraA03t12702Z' => 'bra', 'BraA05t22808Z' => 'bra', 'BraA08t33281Z' => 'bra', 'BraA10t43495Z' => 'bra', 'BraA10t43542Z' => 'bra', 'C01p25200' => 'bna', 'C03p15510' => 'bna', 'C03p42840' => 'bna', 'C03p42860' => 'bna', 'C05p59880' => 'bna', 'C09p48270' => 'bna', 'C09p48990' => 'bna', 'CAN.G128.65' => 'can', 'CAN.G1398.6' => 'can', 'CAN.G858.2' => 'can', 'CAN.G861.31' => 'can', 'CANSAT01G2555' => 'cansat', 'CANSAT01G2737' => 'cansat', 'CANSAT21G1584' => 'cansat', 'CANSAT56G3149' => 'cansat', 'CARHR000660' => 'chi', 'CARHR082060' => 'chi', 'CARHR223920' => 'chi', 'CARHR270370' => 'chi', 'Carub.0003s0696' => 'cru', 'Carub.0004s0660' => 'cru', 'Carub.0007s2410' => 'cru', 'Carub.0008s1715' => 'cru', 'Ca_17383_v3' => 'car', 'Ca_21967_v3' => 'car', 'Ca_23190_v3' => 'car', 'Ca_29442_v3' => 'car', 'CBR_g12968' => 'cbr', 'CBR_g16969' => 'cbr', 'Cc01_g16270' => 'ccan', 'Cc06_g10910' => 'ccan', 'Cc08_g12390' => 'ccan', 'Cc08_g12400' => 'ccan', 'CDE02G0631' => 'cde', 'CDE02G2296' => 'cde', 'CDE04G0341' => 'cde', 'CDE04G1076' => 'cde', 'CDE04G2234' => 'cde', 'CDE07G1974' => 'cde', 'CDE11G0048' => 'cde', 'Cfa003139' => 'cfa', 'Cfa010334' => 'cfa', 'Cfa012720' => 'cfa', 'Cfa015859' => 'cfa', 'Cfa024979' => 'cfa', 'Ciclev10003532m.g' => 'ccl', 'Ciclev10003760m.g' => 'ccl', 'Ciclev10007872m.g' => 'ccl', 'Ciclev10019519m.g' => 'ccl', 'Ciclev10030394m.g' => 'ccl', 'Ciclev10030945m.g' => 'ccl', 'CiPaw.03G220200' => 'cil', 'CiPaw.11G079300' => 'cil', 'CiPaw.13G053900' => 'cil', 'CiPaw.13G054000' => 'cil', 'CiPaw.14G043000' => 'cil', 'ClCG03G016330' => 'cla', 'ClCG09G008450' => 'cla', 'ClCG10G002680' => 'cla', 'COL.COLO4_04505' => 'col', 'COL.COLO4_18254' => 'col', 'COL.COLO4_18255' => 'col', 'COL.COLO4_30918' => 'col', 'COL.COLO4_37172' => 'col', 'Cpa.g.sc29.159' => 'cpa', 'Cpa.g.sc78.58' => 'cpa', 'Cpa.g.sc8.86' => 'cpa', 'Cre03.g193800' => 'cre', 'CsaV3_1G039630' => 'csa', 'CsaV3_3G002710' => 'csa', 'CsaV3_7G026620' => 'csa', 'CSS0004329' => 'camsi', 'CSS0020095' => 'camsi', 'CSS0034916' => 'camsi', 'CSS0035767' => 'camsi', 'CSS0036126' => 'camsi', 'CSS0047906' => 'camsi', 'CSS0049758' => 'camsi', 'DCAR_004765' => 'dca', 'DCAR_008493' => 'dca', 'DCAR_010685' => 'dca', 'Dinv12802' => 'din', 'Dinv18556' => 'din', 'Dinv28818' => 'din', 'Dinv36728' => 'din', 'Dinv39148' => 'din', 'Dinv42285' => 'din', 'Duzib136G0002' => 'dzi', 'Duzib138G1042' => 'dzi', 'Duzib150G0351' => 'dzi', 'Duzib168G0161' => 'dzi', 'Duzib187G1049' => 'dzi', 'Duzib205G1000' => 'dzi', 'Duzib211G0457' => 'dzi', 'ECA238G1281' => 'eca', 'ECA240G0176' => 'eca', 'ECA240G1278' => 'eca', 'ECA248G0673' => 'eca', 'EL10Ac3g05935' => 'bvu', 'EL10Ac7g17985' => 'bvu', 'EL10Ac9g22659' => 'bvu', 'Eucgr.C00933' => 'egr', 'Eucgr.D02080' => 'egr', 'Eucgr.H00731' => 'egr', 'FAN11G0240' => 'fan', 'FAN15G1547' => 'fan', 'FAN15G2194' => 'fan', 'FAN16G2390' => 'fan', 'FAN17G1474' => 'fan', 'FAN19G2852' => 'fan', 'FAN21G3178' => 'fan', 'FAN24G3292' => 'fan', 'FAN25G3143' => 'fan', 'FAN26G2432' => 'fan', 'FAN27G2852' => 'fan', 'FAN28G1286' => 'fan', 'FvH4_1g25310' => 'fve', 'FvH4_2g17960' => 'fve', 'FvH4_3g17430' => 'fve', 'Glyma.03G089300' => 'gma', 'Glyma.05G059500' => 'gma', 'Glyma.05G224000' => 'gma', 'Glyma.08G031100' => 'gma', 'Glyma.16G083800' => 'gma', 'Glyma.17G142000' => 'gma', 'Gohir.A05G210740' => 'ghi', 'Gohir.A05G210760' => 'ghi', 'Gohir.A05G210780' => 'ghi', 'Gohir.A06G046750' => 'ghi', 'Gohir.A06G070200' => 'ghi', 'Gohir.A07G090600' => 'ghi', 'Gohir.A07G197066' => 'ghi', 'Gohir.A08G244350' => 'ghi', 'Gohir.A09G196200' => 'ghi', 'Gohir.A11G141700' => 'ghi', 'Gohir.A11G230302' => 'ghi', 'Gohir.D03G044950' => 'ghi', 'Gohir.D04G058750' => 'ghi', 'Gohir.D05G323525' => 'ghi', 'Gohir.D06G068800' => 'ghi', 'Gohir.D07G095300' => 'ghi', 'Gohir.D08G024601' => 'ghi', 'Gohir.D08G265250' => 'ghi', 'Gohir.D09G127750' => 'ghi', 'Gohir.D09G190800' => 'ghi', 'Gohir.D11G148000' => 'ghi', 'Gohir.D12G032850' => 'ghi', 'Gohir.D13G190966' => 'ghi', 'Gorai.001G102600' => 'gra', 'Gorai.001G229000' => 'gra', 'Gorai.004G283200' => 'gra', 'Gorai.006G213600' => 'gra', 'Gorai.007G158700' => 'gra', 'Gorai.010G080400' => 'gra', 'GSVIVG01004706001' => 'vvi', 'GSVIVG01005287001' => 'vvi', 'GSVIVG01006160001' => 'vvi', 'GSVIVG01013293001' => 'vvi', 'GSVIVG01013821001' => 'vvi', 'GSVIVG01015254001' => 'vvi', 'GSVIVG01023072001' => 'vvi', 'GSVIVG01036115001' => 'vvi', 'HanXRQChr01g0007201' => 'han', 'HanXRQChr01g0030431' => 'han', 'HanXRQChr01g0030441' => 'han', 'HanXRQChr02g0044331' => 'han', 'HanXRQChr03g0087741' => 'han', 'HanXRQChr09g0272701' => 'han', 'HanXRQChr10g0302421' => 'han', 'Haze_03309' => 'cav', 'Haze_07912' => 'cav', 'Haze_25863' => 'cav', 'Hma1.2p1_0098F.1_g048310' => 'hma', 'Hma1.2p1_0405F.1_g145890' => 'hma', 'Hma1.2p1_0663F.1_g198630' => 'hma', 'Hma1.2p1_0663F.1_g198640' => 'hma', 'Hma1.2p1_0781F.1_g216870' => 'hma', 'Hma1.2p1_0982F.1_g243950' => 'hma', 'Hma1.2p1_1074F.1_g254420' => 'hma', 'Hma1.2p1_1172F.1_g263620' => 'hma', 'HPP92_009933' => 'vpl', 'HPP92_014487' => 'vpl', 'HPP92_014488' => 'vpl', 'HPP92_017206' => 'vpl', 'Hund05600' => 'sun', 'Hund14538' => 'sun', 'Hund18486' => 'sun', 'Lalb_Chr09g0330101' => 'lal', 'Lalb_Chr13g0291011' => 'lal', 'Lalb_Chr22g0349811' => 'lal', 'Lj2A1118T68' => 'lonja', 'Lj2C218G3' => 'lonja', 'Lj3g0000697' => 'lja', 'Lj3g0000727' => 'lja', 'Lj4g0012236' => 'lja', 'Lj4g0018864' => 'lja', 'Lj7A670G56' => 'lonja', 'Lsat_1_v5_gn_2_85561' => 'lsa', 'Lsat_1_v5_gn_5_178460' => 'lsa', 'Lsat_1_v5_gn_6_106580' => 'lsa', 'Lsat_1_v5_gn_6_90981' => 'lsa', 'Manes.01G080800' => 'mes', 'Manes.03G030200' => 'mes', 'Manes.12G052400' => 'mes', 'Manes.13G053400' => 'mes', 'Mapoly0043s0090' => 'mpo', 'Mapoly0056s0024' => 'mpo', 'MBI01_g14455_MAGBIO' => 'mbi', 'MBI04_g09502_MAGBIO' => 'mbi', 'MBI04_g46437_MAGBIO' => 'mbi', 'MBI07_g21332_MAGBIO' => 'mbi', 'MBI13_g35418_MAGBIO' => 'mbi', 'MCO02G171' => 'mco', 'MCO16G231' => 'mco', 'MD01G1115900' => 'mdo', 'MD03G1251800' => 'mdo', 'MD05G1158600' => 'mdo', 'MD05G1163500' => 'mdo', 'MD06G1059300' => 'mdo', 'MD10G1153300' => 'mdo', 'MD11G1273000' => 'mdo', 'Medtr4g100920' => 'mtr', 'Medtr7g101050' => 'mtr', 'Medtr8g011530' => 'mtr', 'Medtr8g102050' => 'mtr', 'MELO3C013939.2' => 'cme', 'MELO3C015385.2' => 'cme', 'MELO3C021113.2' => 'cme', 'Migut.A00956' => 'egut', 'Migut.D02469' => 'egut', 'Migut.J00435' => 'egut', 'MSTRG.18811' => 'ama', 'MSTRG.25522' => 'ama', 'MSTRG.6035' => 'ama', 'Nitab4.5_0000001g0370' => 'nta', 'Nitab4.5_0000038g0050' => 'nta', 'Nitab4.5_0001093g0080' => 'nta', 'Nitab4.5_0001495g0030' => 'nta', 'Nitab4.5_0002445g0030' => 'nta', 'Nitab4.5_0007717g0040' => 'nta', 'Nitab4.5_0010147g0010' => 'nta', 'Nitab4.5_0010347g0010' => 'nta', 'Nn1g06240' => 'nnu', 'Nn1g06241' => 'nnu', 'Nn1g08070' => 'nnu', 'Nn5g28583' => 'nnu', 'Nn6g33956' => 'nnu', 'Nn8g38968' => 'nnu', 'Oeu000333.1' => 'oeu', 'Oeu002335.1' => 'oeu', 'Oeu021466.2' => 'oeu', 'Oeu040200.1' => 'oeu', 'Oeu040201.1' => 'oeu', 'Oeu057846.1' => 'oeu', 'Os01g0372700' => 'osa', 'Os07g0485400' => 'osa', 'Os12g0414500' => 'osa', 'Peaxi162Scf00054g00197' => 'pax', 'Peaxi162Scf00076g00920' => 'pax', 'Peaxi162Scf00171g00129' => 'pax', 'Peaxi162Scf00249g00062' => 'pax', 'Peaxi162Scf00761g00051' => 'pax', 'PGR031G3009' => 'pgr', 'PGR083G1253' => 'pgr', 'PGR087G0003' => 'pgr', 'PGR102G2619' => 'pgr', 'PGR142G2819' => 'pgr', 'PGSC0003DMG400015215' => 'stu', 'PGSC0003DMG400022055' => 'stu', 'PGSC0003DMG400023661' => 'stu', 'Phvul.002G305800' => 'pvu', 'Phvul.003G220700' => 'pvu', 'Phvul.010G030800' => 'pvu', 'Potri.002G249700' => 'ptr', 'Potri.006G153900' => 'ptr', 'Potri.007G129800' => 'ptr', 'Potri.017G028800' => 'ptr', 'Potri.018G070000' => 'ptr', 'Pp3c12_7710' => 'ppa', 'Pp3c12_7760' => 'ppa', 'Pp3c1_35170' => 'ppa', 'Pp3c4_19930' => 'ppa', 'PRCOL_00000766' => 'pco', 'PRCOL_00005888' => 'pco', 'Prupe.4G154500' => 'ppe', 'Prupe.5G070100' => 'ppe', 'Prupe.7G068600' => 'ppe', 'Prupe.8G192100' => 'ppe', 'Psat0s4060g0160' => 'psa', 'Psat4g072280' => 'psa', 'Psat7g018640' => 'psa', 'PSO017G6102' => 'pso', 'PSO063G3523' => 'pso', 'PSO063G4989' => 'pso', 'PSO339G5537' => 'pso', 'PSO384G2227' => 'pso', 'PSO386G0259' => 'pso', 'PSO675G2310' => 'pso', 'PSO832G0327' => 'pso', 'QL02p064866' => 'qlo', 'QL07p040810' => 'qlo', 'QL09p045845' => 'qlo', 'QL12p012099' => 'qlo', 'QL12p012112' => 'qlo', 'RcHm_v2.0_Chr2g0123321' => 'rch', 'RcHm_v2.0_Chr5g0028961' => 'rch', 'RcHm_v2.0_Chr6g0283201' => 'rch', 'RcHm_v2.0_Chr7g0228441' => 'rch', 'Rhsim05G0030300' => 'rsi', 'Rhsim05G0030500' => 'rsi', 'Rhsim05G0030800' => 'rsi', 'Rhsim05G0031100' => 'rsi', 'Rhsim06G0183900' => 'rsi', 'Rhsim13G0052000' => 'rsi', 'Sabra02G0190200' => 'sbr', 'Sabra06G0122100' => 'sbr', 'Sabra07G0105700' => 'sbr', 'Sabra17G0017400' => 'sbr', 'Sabra18G0061300' => 'sbr', 'SalBow6G0445' => 'sbo', 'SalBow6G0463' => 'sbo', 'SalBow6G1251' => 'sbo', 'Sc01g0008430' => 'sci', 'Sc08g0008220' => 'sci', 'Sc17g0001800' => 'sci', 'Sed0005108' => 'sed', 'Sed0006747' => 'sed', 'Sed0018812' => 'sed', 'Sed0023162' => 'sed', 'SEGI_12064' => 'sgi', 'SGA_v2.0_scaffold144G35946' => 'sas', 'SGA_v2.0_scaffold170G38769' => 'sas', 'SGA_v2.0_scaffold62G21572' => 'sas', 'SGA_v2.0_scaffold7G04024' => 'sas', 'SMO116G0372' => 'smo', 'SMO165G0027' => 'smo', 'Solyc03g019940.4' => 'sly', 'Solyc09g057950.3' => 'sly', 'Solyc10g080710.2' => 'sly', 'Sopen03g029680' => 'spe', 'Sopen09g020120' => 'spe', 'Sopen10g031250' => 'spe', 'Sp3g06340' => 'spa', 'Sp6g18450' => 'spa', 'Sp7g16870' => 'spa', 'TAR624G0867' => 'tar', 'TAR626G0430' => 'tar', 'TAR633G0582' => 'tar', 'TAR636G2634' => 'tar', 'TAR636G3225' => 'tar', 'THA.LOC104809571' => 'tha', 'THA.LOC104811732' => 'tha', 'THA.LOC104813487' => 'tha', 'THA.LOC104822528' => 'tha', 'Thecc.01G212500' => 'tca', 'Thecc.03G250800' => 'tca', 'Thecc.09G095000' => 'tca', 'Thhalv10000517m.g' => 'esa', 'Thhalv10013096m.g' => 'esa', 'Thhalv10020277m.g' => 'esa', 'Thhalv10024799m.g' => 'esa', 'TPR.G2045' => 'tpr', 'TPR.G25444' => 'tpr', 'TPR.G37633' => 'tpr', 'TWI32G0576' => 'twi', 'TWI36G0799' => 'twi', 'TWI60G0922' => 'twi', 'TWI63G1460' => 'twi', 'TWI75G0503' => 'twi', 'TWI81G0455' => 'twi', 'unitig_22.g5224' => 'ugi', 'unitig_61.g26184' => 'ugi', 'unitig_8.g3697' => 'ugi', 'unitig_899.g15394' => 'ugi', 'vmacro02810' => 'vma', 'vmacro07309' => 'vma', 'vmacro12026' => 'vma', 'VMungo0251G0807' => 'vmu', 'VMungo0251G2154' => 'vmu', 'VMungo0331G0097' => 'vmu', 'VMungo0720G1214' => 'vmu', 'Zm00001eb105060' => 'zma', 'Zm00001eb120130' => 'zma', 'Zm00001eb321560' => 'zma', 'Zm00001eb341390' => 'zma', 'Zm00001eb428260' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001300', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001300' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001300', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '483', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001300' ) ), 'genes' => array( 'A01p20060' => 'bna', 'A03p13240' => 'bna', 'A03p35240' => 'bna', 'A05p40770' => 'bna', 'A08p12980' => 'bna', 'A10p14040' => 'bna', 'A10p14550' => 'bna', 'Aa31LG3G12520' => 'aar', 'Aa31LG5G17990' => 'aar', 'Aa31LG6G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3265' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4475' => 'aag', 'Actinidia02135' => 'ach', 'Actinidia23363' => 'ach', 'Actinidia25280' => 'ach', 'Actinidia30022' => 'ach', 'Actinidia39751' => 'ach', 'Ah.01g002430' => 'amhyb', 'Ah.01g002480' => 'amhyb', 'Ah.01g014750' => 'amhyb', 'Ah.08g218710' => 'amhyb', 'AL239U10010' => 'aly', 'AL2G27280' => 'aly', 'AL2G30930' => 'aly', 'AL3G18720' => 'aly', 'AL7G37410' => 'aly', 'AL8G32490' => 'aly', 'Aqoxy206s002' => 'aox', 'Aqoxy3G02643' => 'aox', 'Aqoxy5G01840' => 'aox', 'Aqoxy5G03483' => 'aox', 'arahy.Tifrunner.gnm1.ann1.24DBAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DM8EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4908EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ZG50Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNY53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUH36G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPEJ84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVQ67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N58NZT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF6M8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI6YU' => 'arhy', 'AT1G68420' => 'ath', 'AT1G70980' => 'ath', 'AT3G07420' => 'ath', 'AT4G17300' => 'ath', 'AT5G38750' => 'ath', 'AT5G56680' => 'ath', 'ATR0564G320' => 'atr', 'ATR0564G540' => 'atr', 'ATR0609G037' => 'atr', 'Atru.chr10.1120' => 'acertr', 'Atru.chr12.300' => 'acertr', 'Atru.chr12.337' => 'acertr', 'Atru.chr6.1601' => 'acertr', 'Atru.chr6.1602' => 'acertr', 'Atru.chr6.1603' => 'acertr', 'Atru.chr7.1517' => 'acertr', 'AUR62001197' => 'cqu', 'AUR62007517' => 'cqu', 'AUR62007518' => 'cqu', 'AUR62022131' => 'cqu', 'AUR62031634' => 'cqu', 'AUR62038865' => 'cqu', 'AUR62042796' => 'cqu', 'AUR62044033' => 'cqu', 'BcaB01g04415' => 'bca', 'BcaB03g14703' => 'bca', 'BcaB03g16269' => 'bca', 'BcaB04g18409' => 'bca', 'BcaB08g36069' => 'bca', 'BcaB08g36074' => 'bca', 'BcaC01g04284' => 'bca', 'BcaC01g04286' => 'bca', 'BcaC01g06442' => 'bca', 'BcaC04g19994' => 'bca', 'BcaC04g20061' => 'bca', 'BcaC05g29534' => 'bca', 'BcaC07g38041' => 'bca', 'BcaC07g38044' => 'bca', 'BcaC09g50462' => 'bca', 'BcaNung00103' => 'bca', 'BolC1t02469H' => 'bol', 'BolC3t13989H' => 'bol', 'BolC3t16552H' => 'bol', 'BolC3t16554H' => 'bol', 'BolC5t34642H' => 'bol', 'BolC8t48447H' => 'bol', 'BolC9t57677H' => 'bol', 'BolC9t57750H' => 'bol', 'BraA01t01930Z' => 'bra', 'BraA03t10636Z' => 'bra', 'BraA03t12702Z' => 'bra', 'BraA05t22808Z' => 'bra', 'BraA08t33281Z' => 'bra', 'BraA10t43495Z' => 'bra', 'BraA10t43542Z' => 'bra', 'C01p25200' => 'bna', 'C03p15510' => 'bna', 'C03p42840' => 'bna', 'C03p42860' => 'bna', 'C05p59880' => 'bna', 'C09p48270' => 'bna', 'C09p48990' => 'bna', 'CAN.G128.65' => 'can', 'CAN.G1398.6' => 'can', 'CAN.G858.2' => 'can', 'CAN.G861.31' => 'can', 'CANSAT01G2555' => 'cansat', 'CANSAT01G2737' => 'cansat', 'CANSAT21G1584' => 'cansat', 'CANSAT56G3149' => 'cansat', 'CARHR000660' => 'chi', 'CARHR082060' => 'chi', 'CARHR223920' => 'chi', 'CARHR270370' => 'chi', 'Carub.0003s0696' => 'cru', 'Carub.0004s0660' => 'cru', 'Carub.0007s2410' => 'cru', 'Carub.0008s1715' => 'cru', 'Ca_17383_v3' => 'car', 'Ca_21967_v3' => 'car', 'Ca_23190_v3' => 'car', 'Ca_29442_v3' => 'car', 'CBR_g12968' => 'cbr', 'CBR_g16969' => 'cbr', 'Cc01_g16270' => 'ccan', 'Cc06_g10910' => 'ccan', 'Cc08_g12390' => 'ccan', 'Cc08_g12400' => 'ccan', 'CDE02G0631' => 'cde', 'CDE02G2296' => 'cde', 'CDE04G0341' => 'cde', 'CDE04G1076' => 'cde', 'CDE04G2234' => 'cde', 'CDE07G1974' => 'cde', 'CDE11G0048' => 'cde', 'Cfa003139' => 'cfa', 'Cfa010334' => 'cfa', 'Cfa012720' => 'cfa', 'Cfa015859' => 'cfa', 'Cfa024979' => 'cfa', 'Ciclev10003532m.g' => 'ccl', 'Ciclev10003760m.g' => 'ccl', 'Ciclev10007872m.g' => 'ccl', 'Ciclev10019519m.g' => 'ccl', 'Ciclev10030394m.g' => 'ccl', 'Ciclev10030945m.g' => 'ccl', 'CiPaw.03G220200' => 'cil', 'CiPaw.11G079300' => 'cil', 'CiPaw.13G053900' => 'cil', 'CiPaw.13G054000' => 'cil', 'CiPaw.14G043000' => 'cil', 'ClCG03G016330' => 'cla', 'ClCG09G008450' => 'cla', 'ClCG10G002680' => 'cla', 'COL.COLO4_04505' => 'col', 'COL.COLO4_18254' => 'col', 'COL.COLO4_18255' => 'col', 'COL.COLO4_30918' => 'col', 'COL.COLO4_37172' => 'col', 'Cpa.g.sc29.159' => 'cpa', 'Cpa.g.sc78.58' => 'cpa', 'Cpa.g.sc8.86' => 'cpa', 'Cre03.g193800' => 'cre', 'CsaV3_1G039630' => 'csa', 'CsaV3_3G002710' => 'csa', 'CsaV3_7G026620' => 'csa', 'CSS0004329' => 'camsi', 'CSS0020095' => 'camsi', 'CSS0034916' => 'camsi', 'CSS0035767' => 'camsi', 'CSS0036126' => 'camsi', 'CSS0047906' => 'camsi', 'CSS0049758' => 'camsi', 'DCAR_004765' => 'dca', 'DCAR_008493' => 'dca', 'DCAR_010685' => 'dca', 'Dinv12802' => 'din', 'Dinv18556' => 'din', 'Dinv28818' => 'din', 'Dinv36728' => 'din', 'Dinv39148' => 'din', 'Dinv42285' => 'din', 'Duzib136G0002' => 'dzi', 'Duzib138G1042' => 'dzi', 'Duzib150G0351' => 'dzi', 'Duzib168G0161' => 'dzi', 'Duzib187G1049' => 'dzi', 'Duzib205G1000' => 'dzi', 'Duzib211G0457' => 'dzi', 'ECA238G1281' => 'eca', 'ECA240G0176' => 'eca', 'ECA240G1278' => 'eca', 'ECA248G0673' => 'eca', 'EL10Ac3g05935' => 'bvu', 'EL10Ac7g17985' => 'bvu', 'EL10Ac9g22659' => 'bvu', 'Eucgr.C00933' => 'egr', 'Eucgr.D02080' => 'egr', 'Eucgr.H00731' => 'egr', 'FAN11G0240' => 'fan', 'FAN15G1547' => 'fan', 'FAN15G2194' => 'fan', 'FAN16G2390' => 'fan', 'FAN17G1474' => 'fan', 'FAN19G2852' => 'fan', 'FAN21G3178' => 'fan', 'FAN24G3292' => 'fan', 'FAN25G3143' => 'fan', 'FAN26G2432' => 'fan', 'FAN27G2852' => 'fan', 'FAN28G1286' => 'fan', 'FvH4_1g25310' => 'fve', 'FvH4_2g17960' => 'fve', 'FvH4_3g17430' => 'fve', 'Glyma.03G089300' => 'gma', 'Glyma.05G059500' => 'gma', 'Glyma.05G224000' => 'gma', 'Glyma.08G031100' => 'gma', 'Glyma.16G083800' => 'gma', 'Glyma.17G142000' => 'gma', 'Gohir.A05G210740' => 'ghi', 'Gohir.A05G210760' => 'ghi', 'Gohir.A05G210780' => 'ghi', 'Gohir.A06G046750' => 'ghi', 'Gohir.A06G070200' => 'ghi', 'Gohir.A07G090600' => 'ghi', 'Gohir.A07G197066' => 'ghi', 'Gohir.A08G244350' => 'ghi', 'Gohir.A09G196200' => 'ghi', 'Gohir.A11G141700' => 'ghi', 'Gohir.A11G230302' => 'ghi', 'Gohir.D03G044950' => 'ghi', 'Gohir.D04G058750' => 'ghi', 'Gohir.D05G323525' => 'ghi', 'Gohir.D06G068800' => 'ghi', 'Gohir.D07G095300' => 'ghi', 'Gohir.D08G024601' => 'ghi', 'Gohir.D08G265250' => 'ghi', 'Gohir.D09G127750' => 'ghi', 'Gohir.D09G190800' => 'ghi', 'Gohir.D11G148000' => 'ghi', 'Gohir.D12G032850' => 'ghi', 'Gohir.D13G190966' => 'ghi', 'Gorai.001G102600' => 'gra', 'Gorai.001G229000' => 'gra', 'Gorai.004G283200' => 'gra', 'Gorai.006G213600' => 'gra', 'Gorai.007G158700' => 'gra', 'Gorai.010G080400' => 'gra', 'GSVIVG01004706001' => 'vvi', 'GSVIVG01005287001' => 'vvi', 'GSVIVG01006160001' => 'vvi', 'GSVIVG01013293001' => 'vvi', 'GSVIVG01013821001' => 'vvi', 'GSVIVG01015254001' => 'vvi', 'GSVIVG01023072001' => 'vvi', 'GSVIVG01036115001' => 'vvi', 'HanXRQChr01g0007201' => 'han', 'HanXRQChr01g0030431' => 'han', 'HanXRQChr01g0030441' => 'han', 'HanXRQChr02g0044331' => 'han', 'HanXRQChr03g0087741' => 'han', 'HanXRQChr09g0272701' => 'han', 'HanXRQChr10g0302421' => 'han', 'Haze_03309' => 'cav', 'Haze_07912' => 'cav', 'Haze_25863' => 'cav', 'Hma1.2p1_0098F.1_g048310' => 'hma', 'Hma1.2p1_0405F.1_g145890' => 'hma', 'Hma1.2p1_0663F.1_g198630' => 'hma', 'Hma1.2p1_0663F.1_g198640' => 'hma', 'Hma1.2p1_0781F.1_g216870' => 'hma', 'Hma1.2p1_0982F.1_g243950' => 'hma', 'Hma1.2p1_1074F.1_g254420' => 'hma', 'Hma1.2p1_1172F.1_g263620' => 'hma', 'HPP92_009933' => 'vpl', 'HPP92_014487' => 'vpl', 'HPP92_014488' => 'vpl', 'HPP92_017206' => 'vpl', 'Hund05600' => 'sun', 'Hund14538' => 'sun', 'Hund18486' => 'sun', 'Lalb_Chr09g0330101' => 'lal', 'Lalb_Chr13g0291011' => 'lal', 'Lalb_Chr22g0349811' => 'lal', 'Lj2A1118T68' => 'lonja', 'Lj2C218G3' => 'lonja', 'Lj3g0000697' => 'lja', 'Lj3g0000727' => 'lja', 'Lj4g0012236' => 'lja', 'Lj4g0018864' => 'lja', 'Lj7A670G56' => 'lonja', 'Lsat_1_v5_gn_2_85561' => 'lsa', 'Lsat_1_v5_gn_5_178460' => 'lsa', 'Lsat_1_v5_gn_6_106580' => 'lsa', 'Lsat_1_v5_gn_6_90981' => 'lsa', 'Manes.01G080800' => 'mes', 'Manes.03G030200' => 'mes', 'Manes.12G052400' => 'mes', 'Manes.13G053400' => 'mes', 'Mapoly0043s0090' => 'mpo', 'Mapoly0056s0024' => 'mpo', 'MBI01_g14455_MAGBIO' => 'mbi', 'MBI04_g09502_MAGBIO' => 'mbi', 'MBI04_g46437_MAGBIO' => 'mbi', 'MBI07_g21332_MAGBIO' => 'mbi', 'MBI13_g35418_MAGBIO' => 'mbi', 'MCO02G171' => 'mco', 'MCO16G231' => 'mco', 'MD01G1115900' => 'mdo', 'MD03G1251800' => 'mdo', 'MD05G1158600' => 'mdo', 'MD05G1163500' => 'mdo', 'MD06G1059300' => 'mdo', 'MD10G1153300' => 'mdo', 'MD11G1273000' => 'mdo', 'Medtr4g100920' => 'mtr', 'Medtr7g101050' => 'mtr', 'Medtr8g011530' => 'mtr', 'Medtr8g102050' => 'mtr', 'MELO3C013939.2' => 'cme', 'MELO3C015385.2' => 'cme', 'MELO3C021113.2' => 'cme', 'Migut.A00956' => 'egut', 'Migut.D02469' => 'egut', 'Migut.J00435' => 'egut', 'MSTRG.18811' => 'ama', 'MSTRG.25522' => 'ama', 'MSTRG.6035' => 'ama', 'Nitab4.5_0000001g0370' => 'nta', 'Nitab4.5_0000038g0050' => 'nta', 'Nitab4.5_0001093g0080' => 'nta', 'Nitab4.5_0001495g0030' => 'nta', 'Nitab4.5_0002445g0030' => 'nta', 'Nitab4.5_0007717g0040' => 'nta', 'Nitab4.5_0010147g0010' => 'nta', 'Nitab4.5_0010347g0010' => 'nta', 'Nn1g06240' => 'nnu', 'Nn1g06241' => 'nnu', 'Nn1g08070' => 'nnu', 'Nn5g28583' => 'nnu', 'Nn6g33956' => 'nnu', 'Nn8g38968' => 'nnu', 'Oeu000333.1' => 'oeu', 'Oeu002335.1' => 'oeu', 'Oeu021466.2' => 'oeu', 'Oeu040200.1' => 'oeu', 'Oeu040201.1' => 'oeu', 'Oeu057846.1' => 'oeu', 'Os01g0372700' => 'osa', 'Os07g0485400' => 'osa', 'Os12g0414500' => 'osa', 'Peaxi162Scf00054g00197' => 'pax', 'Peaxi162Scf00076g00920' => 'pax', 'Peaxi162Scf00171g00129' => 'pax', 'Peaxi162Scf00249g00062' => 'pax', 'Peaxi162Scf00761g00051' => 'pax', 'PGR031G3009' => 'pgr', 'PGR083G1253' => 'pgr', 'PGR087G0003' => 'pgr', 'PGR102G2619' => 'pgr', 'PGR142G2819' => 'pgr', 'PGSC0003DMG400015215' => 'stu', 'PGSC0003DMG400022055' => 'stu', 'PGSC0003DMG400023661' => 'stu', 'Phvul.002G305800' => 'pvu', 'Phvul.003G220700' => 'pvu', 'Phvul.010G030800' => 'pvu', 'Potri.002G249700' => 'ptr', 'Potri.006G153900' => 'ptr', 'Potri.007G129800' => 'ptr', 'Potri.017G028800' => 'ptr', 'Potri.018G070000' => 'ptr', 'Pp3c12_7710' => 'ppa', 'Pp3c12_7760' => 'ppa', 'Pp3c1_35170' => 'ppa', 'Pp3c4_19930' => 'ppa', 'PRCOL_00000766' => 'pco', 'PRCOL_00005888' => 'pco', 'Prupe.4G154500' => 'ppe', 'Prupe.5G070100' => 'ppe', 'Prupe.7G068600' => 'ppe', 'Prupe.8G192100' => 'ppe', 'Psat0s4060g0160' => 'psa', 'Psat4g072280' => 'psa', 'Psat7g018640' => 'psa', 'PSO017G6102' => 'pso', 'PSO063G3523' => 'pso', 'PSO063G4989' => 'pso', 'PSO339G5537' => 'pso', 'PSO384G2227' => 'pso', 'PSO386G0259' => 'pso', 'PSO675G2310' => 'pso', 'PSO832G0327' => 'pso', 'QL02p064866' => 'qlo', 'QL07p040810' => 'qlo', 'QL09p045845' => 'qlo', 'QL12p012099' => 'qlo', 'QL12p012112' => 'qlo', 'RcHm_v2.0_Chr2g0123321' => 'rch', 'RcHm_v2.0_Chr5g0028961' => 'rch', 'RcHm_v2.0_Chr6g0283201' => 'rch', 'RcHm_v2.0_Chr7g0228441' => 'rch', 'Rhsim05G0030300' => 'rsi', 'Rhsim05G0030500' => 'rsi', 'Rhsim05G0030800' => 'rsi', 'Rhsim05G0031100' => 'rsi', 'Rhsim06G0183900' => 'rsi', 'Rhsim13G0052000' => 'rsi', 'Sabra02G0190200' => 'sbr', 'Sabra06G0122100' => 'sbr', 'Sabra07G0105700' => 'sbr', 'Sabra17G0017400' => 'sbr', 'Sabra18G0061300' => 'sbr', 'SalBow6G0445' => 'sbo', 'SalBow6G0463' => 'sbo', 'SalBow6G1251' => 'sbo', 'Sc01g0008430' => 'sci', 'Sc08g0008220' => 'sci', 'Sc17g0001800' => 'sci', 'Sed0005108' => 'sed', 'Sed0006747' => 'sed', 'Sed0018812' => 'sed', 'Sed0023162' => 'sed', 'SEGI_12064' => 'sgi', 'SGA_v2.0_scaffold144G35946' => 'sas', 'SGA_v2.0_scaffold170G38769' => 'sas', 'SGA_v2.0_scaffold62G21572' => 'sas', 'SGA_v2.0_scaffold7G04024' => 'sas', 'SMO116G0372' => 'smo', 'SMO165G0027' => 'smo', 'Solyc03g019940.4' => 'sly', 'Solyc09g057950.3' => 'sly', 'Solyc10g080710.2' => 'sly', 'Sopen03g029680' => 'spe', 'Sopen09g020120' => 'spe', 'Sopen10g031250' => 'spe', 'Sp3g06340' => 'spa', 'Sp6g18450' => 'spa', 'Sp7g16870' => 'spa', 'TAR624G0867' => 'tar', 'TAR626G0430' => 'tar', 'TAR633G0582' => 'tar', 'TAR636G2634' => 'tar', 'TAR636G3225' => 'tar', 'THA.LOC104809571' => 'tha', 'THA.LOC104811732' => 'tha', 'THA.LOC104813487' => 'tha', 'THA.LOC104822528' => 'tha', 'Thecc.01G212500' => 'tca', 'Thecc.03G250800' => 'tca', 'Thecc.09G095000' => 'tca', 'Thhalv10000517m.g' => 'esa', 'Thhalv10013096m.g' => 'esa', 'Thhalv10020277m.g' => 'esa', 'Thhalv10024799m.g' => 'esa', 'TPR.G2045' => 'tpr', 'TPR.G25444' => 'tpr', 'TPR.G37633' => 'tpr', 'TWI32G0576' => 'twi', 'TWI36G0799' => 'twi', 'TWI60G0922' => 'twi', 'TWI63G1460' => 'twi', 'TWI75G0503' => 'twi', 'TWI81G0455' => 'twi', 'unitig_22.g5224' => 'ugi', 'unitig_61.g26184' => 'ugi', 'unitig_8.g3697' => 'ugi', 'unitig_899.g15394' => 'ugi', 'vmacro02810' => 'vma', 'vmacro07309' => 'vma', 'vmacro12026' => 'vma', 'VMungo0251G0807' => 'vmu', 'VMungo0251G2154' => 'vmu', 'VMungo0331G0097' => 'vmu', 'VMungo0720G1214' => 'vmu', 'Zm00001eb105060' => 'zma', 'Zm00001eb120130' => 'zma', 'Zm00001eb321560' => 'zma', 'Zm00001eb341390' => 'zma', 'Zm00001eb428260' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001300' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001300' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001300' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001300' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151