Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 4.3e-141 504.6 245 100.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.2e-128 461.8 243 91.4
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.9e-126 454.9 239 90.8
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.6e-119 431.4 244 86.1
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.3e-118 429.1 245 85.7
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 3.1e-115 418.7 242 84.3
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 7.6e-114 414.1 245 81.6
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.1e-111 406.0 246 83.7
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.4e-107 393.3 245 77.6
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 3.5e-103 378.6 236 77.1
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.3e-102 375.9 244 76.2
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 5.7e-101 371.3 241 74.3
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 9.6e-101 370.5 245 71.4
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 5.3e-99 364.8 246 72.8
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 3.4e-98 362.1 238 73.5
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 7.6e-98 360.9 243 70.0
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 5.0e-97 358.2 245 71.8
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 6.5e-97 357.8 236 72.9
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 3.2e-96 355.5 242 67.8
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 5.5e-96 354.8 245 69.8
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.2e-95 353.6 239 69.9
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.6e-95 353.2 238 72.3
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 2.1e-95 352.8 244 70.9
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 6.7e-94 347.8 244 67.6
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 8.7e-94 347.4 241 68.9
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.1e-93 347.1 244 67.6
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.5e-93 345.9 237 69.6
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.5e-93 345.9 245 68.6
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 5.7e-93 344.7 235 71.1
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.7e-93 344.7 236 69.5
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 1.3e-92 343.6 236 68.6
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.3e-92 343.6 244 67.2
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.8e-92 342.4 244 66.8
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.7e-92 342.0 244 67.2
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 4.8e-92 341.7 235 70.2
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.3e-92 341.3 237 69.6
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.4e-91 340.1 240 67.5
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.8e-91 339.7 236 68.2
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 6.9e-91 337.8 239 67.4
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 9.1e-91 337.4 238 68.1
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 2.0e-90 336.3 235 68.5
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 3.4e-90 335.5 234 68.8
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 2.2e-89 332.8 234 67.9
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.9e-89 332.4 235 68.9
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 3.8e-89 332.0 239 67.4
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 3.8e-89 332.0 240 66.2
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 2.5e-88 329.3 238 66.0
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 3.2e-88 328.9 236 66.1
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 4.2e-88 328.6 236 66.5
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 5.5e-88 328.2 235 67.7
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 9.4e-88 327.4 234 67.5
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 9.4e-88 327.4 237 67.1
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 9.4e-88 327.4 237 67.1
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.7e-87 325.9 260 63.5
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.6e-87 325.1 240 66.2
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 4.6e-87 325.1 258 63.2
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 6.1e-87 324.7 235 66.8
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.0e-86 322.4 243 64.2
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.1e-86 321.6 217 71.4
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 6.7e-86 321.2 237 66.2
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 8.8e-86 320.9 236 67.4
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.5e-85 320.1 240 65.0
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 9.7e-85 317.4 234 67.5
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 2.8e-84 315.8 235 67.2
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 3.7e-84 315.5 236 65.3
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 4.8e-84 315.1 237 64.1
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 4.8e-84 315.1 244 61.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.8e-83 313.2 235 66.8
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.2e-82 310.5 241 64.7
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.2e-82 310.5 237 62.0
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.0e-82 309.7 235 65.1
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.6e-82 309.3 238 61.8
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.0e-81 307.4 235 65.5
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.0e-81 307.4 241 64.3
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-81 307.0 235 65.5
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.7e-81 306.6 242 64.5
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 6.5e-81 304.7 236 63.6
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.5e-81 304.7 236 63.1
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.5e-81 304.7 236 63.1
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.5e-81 304.3 235 65.1
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.9e-80 303.1 235 65.1
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 3.2e-80 302.4 239 60.7
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 5.5e-80 301.6 217 68.2
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 2.1e-79 299.7 242 59.9
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 2.7e-79 299.3 242 62.4
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 4.7e-79 298.5 250 60.8
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.0e-78 297.4 236 61.0
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 2.3e-78 296.2 237 62.4
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 3.9e-78 295.4 244 61.9
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 5.2e-78 295.0 225 66.7
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 6.7e-78 294.7 236 61.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 6.7e-78 294.7 249 58.6
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 6.7e-78 294.7 250 60.4
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 8.8e-78 294.3 206 68.9
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 8.8e-78 294.3 236 62.7
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.5e-77 293.5 243 62.1
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.5e-77 293.5 243 62.1
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.0e-77 293.1 235 64.3
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 2.0e-77 293.1 242 62.4
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.6e-77 292.7 242 62.0
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 3.3e-77 292.4 231 60.6
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.7e-77 291.6 236 60.2
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 3.7e-76 288.9 238 59.7
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 4.8e-76 288.5 249 59.0
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.4e-75 287.0 238 59.2
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.8e-75 286.6 239 58.6
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.4e-75 286.2 204 67.6
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.1e-75 285.4 239 58.6
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 4.1e-75 285.4 238 58.8
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 4.1e-75 285.4 228 59.2
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 7.0e-75 284.6 238 58.0
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 2.0e-74 283.1 235 60.4
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-74 283.1 204 67.6
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 2.0e-74 283.1 241 58.5
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 2.0e-74 283.1 238 58.8
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.5e-74 282.3 237 59.1
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 3.5e-74 282.3 241 60.6
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.5e-74 282.3 241 60.6
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 3.5e-74 282.3 240 56.7
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.5e-74 282.0 238 58.4
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.0e-73 280.8 239 60.7
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.7e-73 280.0 237 57.8
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.7e-73 280.0 237 57.8
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 2.2e-73 279.6 238 57.1
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.8e-73 278.9 217 61.8
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 5.0e-73 278.5 238 58.0
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 5.0e-73 278.5 238 58.0
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 6.5e-73 278.1 243 60.1
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.2e-72 275.8 243 59.3
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.2e-72 275.4 238 55.9
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.6e-71 273.5 241 58.5
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 2.7e-71 272.7 245 59.6
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.4e-70 270.4 237 56.5
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 4.0e-70 268.9 238 55.9
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.5e-69 266.9 236 53.8
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.3e-69 265.8 238 56.3
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 4.4e-69 265.4 236 56.4
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 7.5e-69 264.6 245 55.1
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.4e-67 259.6 236 55.5
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 5.3e-67 258.5 259 52.9
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.2e-66 257.3 234 52.1
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 4.5e-66 255.4 240 55.8
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.0e-65 254.2 236 55.9
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 1.3e-65 253.8 225 56.4
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 4.7e-63 245.4 210 56.7
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.2e-62 241.9 232 51.7
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.6e-61 239.6 246 51.2
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-61 239.6 184 62.0
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.6e-61 239.6 175 65.1
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 9.8e-61 237.7 224 54.5
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 4.8e-60 235.3 238 50.8
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.0e-59 231.5 165 66.7
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 3.6e-55 219.2 158 69.0
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.6e-55 219.2 158 65.2
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 2.3e-54 216.5 243 48.1
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.5e-53 213.8 186 61.8
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 7.5e-53 211.5 164 59.8
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.8e-52 209.5 239 50.2
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 2.9e-49 199.5 260 43.8
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.9e-49 199.5 201 53.7
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 3.6e-47 192.6 268 39.9
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.2e-45 187.6 127 67.7
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.7e-44 183.7 209 49.3
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-43 180.6 193 52.3
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 1.0e-33 147.9 116 60.3
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.3e-33 147.5 101 68.3
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.2e-31 138.7 108 62.0
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 8.1e-31 138.3 175 44.6
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 8.1e-31 138.3 151 49.7
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.1e-30 137.9 143 53.1
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 1.3e-28 131.0 119 56.3
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.8e-26 121.7 94 64.9
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 3.3e-24 116.3 73 74.0
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 6.8e-22 108.6 169 37.3
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 9.9e-21 104.8 90 57.8
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.3e-20 104.4 88 52.3
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 9.2e-19 98.2 190 29.5
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 7.8e-18 95.1 143 42.7
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.0e-17 94.7 97 47.4
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.3e-16 89.7 81 55.6
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 4.4e-13 79.3 162 28.4
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.4e-11 74.3 268 25.7
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 6.0e-10 68.9 54 61.1


User provided reference genes

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