Gene: FAN05G3511

General Information

Structural Information

  • Species Fragaria x ananassa
  • Gene Identifier FAN05G3511
  • Transcript Identifier FAN05G3511.1
  • Gene Type Coding gene
  • Location Fvb6-3 : 42201701-42205281 : positive

Gene Family Information

  • ID HOM05D003786
  • #Genes/#Species 182/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id augustus_masked-Fvb6-3-processed-gene-422.2.v1.0.a1
  • pacid 50501799

Descriptions

  • Description 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006388
IEA
InterProtRNA splicing, via endonucleolytic cleavage and ligation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0000213
IEA
InterProtRNA-intron endonuclease activity
GO:0003676
IEA
InterPronucleic acid binding
GO:0004518
IEA
InterPronuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000178
IEA
InterProexosome (RNase complex)

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019495 Exosome complex component CSL4, C-terminal
IPR006676 tRNA-splicing endonuclease
IPR006677 tRNA intron endonuclease, catalytic domain-like
IPR011856 tRNA endonuclease-like domain superfamily
IPR012340 Nucleic acid-binding, OB-fold
IPR006678 tRNA intron endonuclease, N-terminal
IPR025721 Exosome complex component, N-terminal domain
IPR036167 tRNA intron endonuclease, catalytic domain-like superfamily
Mapman id Description
16.4.1.1.8 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component CSL4