Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 3490.7 1771 100.0
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2934.4 1919 80.1
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2597.4 1923 71.6
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2556.9 1921 70.7
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2514.2 1904 70.5
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2055.4 1927 57.5
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 2029.6 1974 56.3
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2025.4 1927 56.5
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1979.5 1928 55.5
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1953.7 1934 55.1
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1948.3 1936 55.2
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1923.7 1932 53.7
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1922.1 1933 55.1
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1919.4 1926 54.5
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1912.5 1935 54.8
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1911.7 1946 53.7
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1907.1 1930 54.6
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1904.4 1931 54.9
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1900.9 1932 53.5
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1893.6 1944 53.4
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1890.9 1956 54.2
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1889.0 1927 53.9
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1889.0 1947 54.3
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1887.8 1923 53.8
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1849.3 1947 53.7
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1848.9 1929 52.5
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1843.9 1958 51.9
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1842.8 1323 71.4
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1842.4 1938 52.9
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1838.2 1929 52.6
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1831.2 1926 52.5
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1828.5 1919 52.7
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1826.6 1923 52.5
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1815.4 1794 56.8
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1813.5 1918 52.0
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1803.1 1937 51.5
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1800.0 1920 51.9
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1795.0 1921 51.4
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1790.0 1924 51.6
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1787.3 2068 49.5
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1780.8 1942 51.7
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1778.5 1925 52.5
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1778.1 1936 51.5
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1775.8 1922 51.2
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1773.8 1937 51.5
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1771.5 1923 51.2
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1770.4 1924 51.1
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1767.3 1972 50.4
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1759.6 1922 51.0
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1756.1 1888 52.6
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1753.4 1886 53.2
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1751.5 1861 51.5
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1749.9 1921 50.7
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1747.3 1919 50.7
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1718.7 1934 50.4
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1714.9 1919 49.9
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1705.6 1927 51.1
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1701.0 1214 72.0
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1688.3 1928 49.6
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1686.4 1870 51.5
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1684.5 1815 51.8
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1682.9 2042 47.7
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1679.8 1930 49.4
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1677.1 1946 50.3
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1668.3 1972 47.8
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1659.4 2423 42.0
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1656.7 1925 49.0
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1654.0 1923 48.5
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1653.3 1938 48.6
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1652.1 1927 49.2
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1643.6 1936 48.3
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1639.0 1924 48.2
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1620.5 1817 50.0
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1597.8 1919 47.5
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1575.8 1924 47.1
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1567.0 1915 47.3
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1558.1 1915 47.0
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1552.0 1915 47.3
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1552.0 1912 46.6
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1550.8 1917 46.5
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1550.0 1933 47.1
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1546.9 1910 47.2
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1545.8 1922 46.6
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1543.1 1917 46.7
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1542.7 1912 47.1
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1542.7 1910 47.2
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1541.6 1825 47.8
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1540.4 1938 46.3
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1528.5 1925 46.8
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1526.5 1912 46.7
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1524.6 1973 44.9
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1521.9 1929 46.3
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1482.6 1898 46.0
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1477.6 1867 46.3
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1392.1 1953 41.5
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1303.1 1824 42.0
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1284.2 1478 48.2
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1267.7 1478 48.0
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1252.3 1100 58.3
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1248.0 1963 39.1
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1233.0 1962 38.5
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1159.4 891 66.6
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 5.8e-272 942.2 1104 46.9
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 2.8e-266 923.3 2078 32.5
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 4.3e-259 899.4 1511 38.3
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 5.5e-254 882.5 2053 31.7
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 2.5e-243 847.0 1147 45.0
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 3.0e-228 797.0 1997 31.0
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 1.4e-180 638.6 1877 30.2
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 3.9e-151 540.8 770 44.3
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 1.1e-126 459.5 917 33.5
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 3.8e-106 391.3 669 37.4
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.5e-73 283.1 181 80.1
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 1.1e-68 266.9 166 79.5
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 4.3e-65 255.0 563 31.1
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 6.2e-56 224.6 626 30.7
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 2.4e-52 212.6 221 44.8
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-49 203.0 629 26.7
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 1.6e-48 199.9 206 46.1
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 4.7e-48 198.4 164 57.3
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 6.2e-48 198.0 145 68.3
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 4.5e-38 165.2 103 73.8
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 1.7e-29 136.7 259 36.3
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 1.2e-27 130.6 209 31.6
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 6.7e-26 124.8 179 39.1
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 1.5e-25 123.6 133 51.9
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 1.6e-24 120.2 95 62.1
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 3.7e-24 119.0 82 68.3
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 1.4e-23 117.1 111 59.5
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 1.5e-22 113.6 166 34.3
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 1.1e-20 107.5 109 56.0
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 6.0e-19 101.7 126 38.9
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 2.5e-12 79.7 62 54.8
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 2.1e-11 76.6 62 53.2
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 4.3e-09 68.9 90 45.6
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 5.7e-09 68.6 43 81.4


User provided reference genes

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