Gene: C09p50300
General Information
Structural Information
- Species Brassica napus
- Gene Identifier C09p50300
- Transcript Identifier C09p50300
- Gene Type Coding gene
- Location C09 : 49681475-49691588 : positive
Gene Family Information
- ID HOM05D001072
- #Genes/#Species 571/100
- Phylogenetic origin
- ID ORTHO05D006807
- #Genes/#Species 138/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid C09p50300.1_BnaDAR
- v5 BnaCnng31900D
- single_cell_id C09p50300.1-BnaDAR
- ensembl GSBRNA2T00020926001
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1990116 | IEA | InterPro | ribosome-associated ubiquitin-dependent protein catabolic process | |
| GO:0006412 | ISO | PLAZA Homology (enrichment) | translation | HOM05D001072 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0061630 | IEA | InterPro | ubiquitin protein ligase activity | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003735 | ISO | PLAZA Homology (enrichment) | structural constituent of ribosome | HOM05D001072 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1990112 | IEA | InterPro | RQC complex | |
| GO:0005840 | ISO | PLAZA Homology (enrichment) | ribosome | HOM05D001072 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013843 | Ribosomal protein S4e, N-terminal |
| IPR005824 | KOW |
| IPR039804 | Listerin, zinc finger, RING-type |
| IPR039795 | E3 ubiquitin-protein ligase listerin |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR013845 | Ribosomal protein S4e, central region |
| IPR016024 | Armadillo-type fold |
| IPR011989 | Armadillo-like helical |
| IPR002942 | RNA-binding S4 domain |
| IPR032277 | 40S ribosomal protein S4, C-terminal domain |
| IPR014722 | Ribosomal protein L2, domain 2 |
| IPR038237 | Ribosomal protein S4e, central domain superfamily |
| IPR036986 | RNA-binding S4 domain superfamily |
| IPR041982 | Ribosomal protein S4, KOW domain |
| Mapman id | Description |
|---|---|
| 17.1.3.1.5 | Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS4 |
| 17.3.3.2.1 | Protein biosynthesis.mRNA quality control.NGD No-Go Decay.Ribosome-associated Quality Control (RQC) complex.E3 ubiquitin ligase component LTN1 |