Gene: PGSC0003DMG402017675

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG402017675
  • Transcript Identifier PGSC0003DMT400045570
  • Gene Type Coding gene
  • Location ST4.03ch09 : 40412400-40417022 : positive

Gene Family Information

  • ID HOM05D001072
  • #Genes/#Species 571/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37458512
  • id PGSC0003DMG402017675.v4.03
  • uniprot M1BHV4

Descriptions

  • Description Binding protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
ISO
PLAZA Homology (enrichment)translation HOM05D001072
GO:1990116
IBA
IEA
GOA Databaseribosome-associated ubiquitin-dependent protein catabolic process
GO:1990116
IEA
InterProribosome-associated ubiquitin-dependent protein catabolic process
GO:0072344
IBA
IEA
GOA Databaserescue of stalled ribosome
GO:0043161
IEA
GOA Databaseproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567
IEA
GOA Databaseprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003735
ISO
PLAZA Homology (enrichment)structural constituent of ribosome HOM05D001072
GO:0003723
ISO
PLAZA Homology (enrichment)RNA binding HOM05D001072
GO:0061630
IBA
IEA
GOA Databaseubiquitin protein ligase activity
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0043023
IBA
IEA
GOA Databaseribosomal large subunit binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
ISO
PLAZA Homology (enrichment)ribosome HOM05D001072
GO:0005829
IBA
IEA
GOA Databasecytosol
GO:1990112
IBA
IEA
GOA DatabaseRQC complex
GO:1990112
IEA
InterProRQC complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001841 Zinc finger, RING-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR039795 E3 ubiquitin-protein ligase listerin
IPR039804 Listerin, zinc finger, RING-type
IPR011016 Zinc finger, RING-CH-type
Mapman id Description
17.3.3.2.1 Protein biosynthesis.mRNA quality control.NGD No-Go Decay.Ribosome-associated Quality Control (RQC) complex.E3 ubiquitin ligase component LTN1