Gene: Zm00001eb093280

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb093280
  • Transcript Identifier Zm00001eb093280_T001
  • Gene Type Coding gene
  • Location 2 : 151668439-151682534 : negative

Gene Family Information

  • ID HOM05D001072
  • #Genes/#Species 571/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb093280_T001
  • pid Zm00001eb093280_P001
  • uniprot A0A3L6FRI0
  • uniprot A0A1D6EIE2
  • uniprot A0A3L6G1B3
  • uniprot A0A1D6EIE0
  • uniprot A0A1D6EIF1
  • uniprot A0A1D6EIG2
  • uniprot A0A1D6EIE7
  • uniprot A0A1D6EIE6
  • uniprot A0A1D6EIF7
  • uniprot A0A1D6EIE5
  • uniprot A0A1D6EIE4
  • uniprot A0A1D6EIF5
  • entrez 103647118
  • refseq XP_008669898.1
  • refseq XM_008671676.1
  • V4_identifier Zm00001d004979

Descriptions

  • Description Zm00001e009194
  • Description E3 ubiquitin-protein ligase listerin
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0072344
IBA
IEA
GOA Databaserescue of stalled ribosome
GO:0006412
ISO
PLAZA Homology (enrichment)translation HOM05D001072
GO:1990116
IBA
IEA
GOA Databaseribosome-associated ubiquitin-dependent protein catabolic process
GO:1990116
IEA
InterProribosome-associated ubiquitin-dependent protein catabolic process
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0043161
IEA
GOA Databaseproteasome-mediated ubiquitin-dependent protein catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
ISO
PLAZA Homology (enrichment)structural constituent of ribosome HOM05D001072
GO:0003723
ISO
PLAZA Homology (enrichment)RNA binding HOM05D001072
GO:0061630
IBA
IEA
GOA Databaseubiquitin protein ligase activity
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0043023
IBA
IEA
GOA Databaseribosomal large subunit binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016874
IEA
GOA Databaseligase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
ISO
PLAZA Homology (enrichment)ribosome HOM05D001072
GO:1990112
IBA
IEA
GOA DatabaseRQC complex
GO:1990112
IEA
InterProRQC complex
GO:0005829
IBA
IEA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011016 Zinc finger, RING-CH-type
IPR039804 Listerin, zinc finger, RING-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001841 Zinc finger, RING-type
IPR011989 Armadillo-like helical
IPR016024 Armadillo-type fold
IPR039795 E3 ubiquitin-protein ligase listerin
Mapman id Description
17.3.3.2.1 Protein biosynthesis.mRNA quality control.NGD No-Go Decay.Ribosome-associated Quality Control (RQC) complex.E3 ubiquitin ligase component LTN1