Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1746.5 873 100.0
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1299.6 871 74.5
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1266.1 871 72.0
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1233.0 868 68.7
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1213.7 869 68.1
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1208.0 874 67.4
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1207.6 868 67.7
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1201.8 957 63.9
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1198.7 870 67.8
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1197.6 869 67.5
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1196.8 869 67.5
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1179.5 871 66.8
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1178.7 872 66.5
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1175.6 873 66.4
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1162.5 935 62.4
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1159.1 876 65.4
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1158.7 871 65.3
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1157.1 876 65.4
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1152.9 872 66.1
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1151.7 876 64.7
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1151.7 876 64.7
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1151.3 873 65.2
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1150.6 880 65.3
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1149.4 868 65.0
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1149.4 877 63.7
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1148.3 873 65.4
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1146.3 876 65.1
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1143.6 873 64.7
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1141.3 870 64.7
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1141.3 928 63.0
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1140.2 873 65.1
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1138.6 869 64.1
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1137.9 1013 58.2
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1136.7 873 64.9
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1134.4 873 64.6
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1134.0 875 64.7
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1134.0 871 63.7
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1131.3 880 62.8
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1130.2 878 63.2
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1129.8 877 62.6
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1129.4 885 63.1
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1129.4 877 63.4
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1128.6 895 65.6
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1126.7 878 62.9
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1125.9 878 63.4
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1122.8 874 63.6
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1122.8 870 63.4
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1120.5 879 63.3
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1120.1 873 62.8
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1117.4 872 63.4
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1115.9 875 63.0
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1114.4 895 61.2
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1114.0 884 64.3
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1113.6 872 64.7
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1113.6 905 61.8
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1113.6 871 62.9
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1113.6 880 62.6
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1112.4 870 63.1
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1112.1 866 63.3
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1110.1 870 62.9
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1105.9 911 60.3
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1103.2 870 62.6
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1102.8 876 63.4
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1102.4 877 61.7
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1100.9 878 62.2
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1100.5 842 63.8
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1092.8 879 62.1
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1092.0 873 60.7
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1091.3 845 63.9
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1085.5 872 62.0
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1085.1 870 61.6
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1085.1 873 61.4
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1082.0 869 61.8
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1082.0 869 61.3
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1080.5 870 61.3
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1080.1 871 61.4
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1078.9 870 61.0
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1077.4 870 61.3
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1076.6 869 61.4
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 6.0e-312 1074.7 870 61.4
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 6.0e-312 1073.5 870 61.0
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 2.4e-311 1072.0 870 60.9
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 7.2e-311 1070.5 875 60.5
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 7.2e-311 1070.5 870 60.9
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 9.0e-311 1070.1 897 60.9
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 1.6e-310 1069.3 869 61.0
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 4.0e-306 1054.7 916 58.2
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 3.8e-301 1038.1 869 59.3
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 5.0e-301 1037.7 868 60.8
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 8.5e-301 1036.9 806 63.6
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 3.2e-300 1035.0 867 59.9
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 2.5e-292 1008.8 876 56.1
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 1.9e-276 956.1 701 67.2
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 8.9e-274 947.2 950 54.1
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 2.4e-263 912.5 800 58.4
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 4.7e-259 898.3 760 60.8
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 6.6e-253 877.9 889 49.6
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.8e-250 869.8 882 49.4
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 6.6e-245 851.3 669 63.2
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.9e-244 849.7 887 50.2
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.1e-227 793.1 642 62.0
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 7.9e-222 774.6 877 44.7
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 8.2e-195 684.9 902 43.0
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 1.6e-193 680.6 971 40.7
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 1.0e-192 677.9 571 61.3
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 4.7e-190 669.1 595 58.8
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 9.1e-178 628.2 508 61.6
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.7e-176 624.0 499 63.3
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 7.8e-161 572.0 855 39.9
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 6.2e-158 562.4 516 54.8
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.5e-156 557.8 381 68.2
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.7e-155 554.3 481 55.1
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 4.7e-150 536.2 450 60.9
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.8e-125 454.5 327 67.0
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 4.3e-119 433.3 628 41.4
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 9.0e-117 425.6 389 56.0
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.3e-78 298.9 161 82.0
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.4e-77 294.7 236 58.1
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 1.2e-73 282.3 417 43.6
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.3e-70 272.3 619 28.9
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 6.3e-62 243.4 659 28.1
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 1.6e-44 185.7 154 61.7
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.9e-34 152.1 125 55.2
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 5.6e-34 150.6 543 24.5
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 6.6e-27 127.1 614 21.2
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.6e-25 122.5 94 59.6
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 2.1e-25 122.1 124 50.0
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 2.9e-22 111.7 120 45.8
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 1.9e-21 109.0 155 39.4
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 8.1e-17 93.6 95 49.5
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 2.0e-15 89.0 42 85.7
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.9e-13 82.4 129 37.2
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 7.1e-13 80.5 90 46.7
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 4.5e-07 61.2 56 50.0
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 8.4e-06 57.0 28 89.3


User provided reference genes

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