Gene: AT2G13540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G13540
  • Transcript Identifier AT2G13540.1
  • Gene Type Coding gene
  • Location Chr2 : 5637053-5642813 : positive

Gene Family Information

  • ID HOM05D005600
  • #Genes/#Species 137/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G13540.1
  • symbol ABH1
  • Alias ATCBP80,CBP80,CAP-BINDING PROTEIN 80,ENS,ENSALADA
  • full_name ABA HYPERSENSITIVE 1
  • uniprot Q9SIU2

Descriptions

  • Description ARM repeat superfamily protein
  • Computational description ABA HYPERSENSITIVE 1 (ABH1); CONTAINS InterPro DOMAIN/s: MIF4G-like, type 2 (InterPro:IPR015174), MIF4G-like, type 1 (InterPro:IPR015172), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); Has 514 Blast hits to 510 proteins in 229 species: Archae - 0; Bacteria - 96; Metazoa - 188; Fungi - 131; Plants - 55; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006370
IEA
GOA Database7-methylguanosine mRNA capping
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0000184
IBA
Gene Ontologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay1
GO:0016070
IEA
GOA DatabaseRNA metabolic process
GO:0016070
IEA
InterProRNA metabolic process
GO:0045292
IEA
Gene OntologymRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0051028
IEA
Gene OntologymRNA transport
GO:0051028
IEA
InterPromRNA transport
GO:0031053
IMP
Gene Ontologyprimary miRNA processing2
GO:1905392
NAS
Gene Ontologyplant organ morphogenesis
GO:0009737
IMP
Gene Ontologyresponse to abscisic acid3
GO:0048574
IMP
Gene Ontologylong-day photoperiodism, flowering4
GO:0000394
IMP
Gene OntologyRNA splicing, via endonucleolytic cleavage and ligation2
GO:0051607
IMP
Gene Ontologydefense response to virus5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000339
IEA
GOA DatabaseRNA cap binding
GO:0000339
IDA
IBA
Gene OntologyRNA cap binding1 3
GO:0000339
IEA
InterProRNA cap binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
IPI
Gene Ontologyprotein binding6
GO:0005515
IEA
InterProprotein binding
GO:0003729
IBA
Gene OntologymRNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005846
IEA
GOA Databasenuclear cap binding complex
GO:0005846
IBA
Gene Ontologynuclear cap binding complex1
GO:0005846
IEA
InterPronuclear cap binding complex
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 7
GO:0005829
RCA
Gene Ontologycytosol8
GO:0005739
HDA
Gene Ontologymitochondrion9
GO:0005845
IBA
Gene OntologymRNA cap binding complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016021 MIF4G-like domain superfamily
IPR016024 Armadillo-type fold
IPR003890 MIF4G-like, type 3
IPR015174 MIF4G-like, type 2
IPR015172 MIF4G-like, type 1
IPR027159 Nuclear cap-binding protein subunit 1
Mapman id Description
16.1.3.1 RNA processing.RNA 5'-end capping.CBP80-CBP20 mRNA Cap-Binding complex (CBC).component CBP80