Gene: Cre12.g524100

General Information

Structural Information

  • Species Chlamydomonas reinhardtii
  • Gene Identifier Cre12.g524100
  • Transcript Identifier Cre12.g524100.t1.2
  • Gene Type Coding gene
  • Location chromosome_12 : 4774033-4781953 : positive

Gene Family Information

  • ID HOM05D005600
  • #Genes/#Species 137/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Cre12.g524100.v5.5
  • pacid 30793624
  • alias g12905.t1

Descriptions

  • Description mRNA cap-binding protein
  • Description Best chlamy 3.0 hit for the possible human CBP80 ortholog: Large subunit of the nuclear mRNA cap-binding protein complex, interacts with Npl3p to carry nuclear poly(A) mRNA to cytoplasm also involved in nuclear mRNA degradation and telomere maintenance;
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
IEA
InterProRNA metabolic process
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0051028
IEA
InterPromRNA transport
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT2G13540
GO:0000394
ISO
PLAZA Integrative OrthologyRNA splicing, via endonucleolytic cleavage and ligation AT2G13540
GO:0031053
ISO
PLAZA Integrative Orthologyprimary miRNA processing AT2G13540
GO:0048574
ISO
PLAZA Integrative Orthologylong-day photoperiodism, flowering AT2G13540
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT2G13540

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000339
IEA
InterProRNA cap binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G13540
GO:0003723
ISO
PLAZA Homology (enrichment)RNA binding HOM05D005600

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005846
IEA
InterPronuclear cap binding complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G13540

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015172 MIF4G-like, type 1
IPR016024 Armadillo-type fold
IPR016021 MIF4G-like domain superfamily
IPR027159 Nuclear cap-binding protein subunit 1
IPR015174 MIF4G-like, type 2
Mapman id Description
16.1.3.1 RNA processing.RNA 5'-end capping.CBP80-CBP20 mRNA Cap-Binding complex (CBC).component CBP80