Gene: Solyc10g005530.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc10g005530.3
  • Transcript Identifier Solyc10g005530.3.1
  • Gene Type Coding gene
  • Location SL4.0ch10 : 321410-338271 : negative

Gene Family Information

  • ID HOM05D005600
  • #Genes/#Species 137/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc10g005530.3.1
  • uniprot A0A3Q7J5A0
  • gene_id Solyc10g005530

Descriptions

  • Description Nuclear cap-binding protein subunit 1 (AHRD V3.3 *** A0A2G2VR77_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT2G13540
GO:0048574
ISO
PLAZA Integrative Orthologylong-day photoperiodism, flowering AT2G13540
GO:0031053
ISO
PLAZA Integrative Orthologyprimary miRNA processing AT2G13540
GO:0000394
ISO
PLAZA Integrative OrthologyRNA splicing, via endonucleolytic cleavage and ligation AT2G13540
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT2G13540
GO:0000184
IBA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0016070
IEA
GOA DatabaseRNA metabolic process
GO:0016070
IEA
InterProRNA metabolic process
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0051028
IEA
InterPromRNA transport
GO:0045292
IEA
GOA DatabasemRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000339
IBA
IEA
GOA DatabaseRNA cap binding
GO:0000339
IEA
InterProRNA cap binding
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005846
IBA
IEA
GOA Databasenuclear cap binding complex
GO:0005846
IEA
InterPronuclear cap binding complex
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005845
IBA
GOA DatabasemRNA cap binding complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016024 Armadillo-type fold
IPR015172 MIF4G-like, type 1
IPR016021 MIF4G-like domain superfamily
IPR003890 MIF4G-like, type 3
IPR015174 MIF4G-like, type 2
IPR027159 Nuclear cap-binding protein subunit 1
Mapman id Description
16.1.3.1 RNA processing.RNA 5'-end capping.CBP80-CBP20 mRNA Cap-Binding complex (CBC).component CBP80