Gene: COL.COLO4_36487
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_36487
- Transcript Identifier COL.rna35173
- Gene Type Coding gene
- Location AWUE01023257.1 : 22996-29460 : negative
Gene Family Information
- ID HOM05D005600
- #Genes/#Species 137/97
- Phylogenetic origin
- ID ORTHO05D006682
- #Genes/#Species 139/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid rna35173
- GenBank OMO54435.1
- id gene36459
- gene_name COLO4_36487
- uniprot A0A1R3G8L3
Descriptions
- Description MIF4G-like, type 3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016070 | IEA | GOA Database | RNA metabolic process | |
| GO:0016070 | IEA | InterPro | RNA metabolic process | |
| GO:0051607 | ISO | PLAZA Integrative Orthology | defense response to virus | AT2G13540 |
| GO:0048574 | ISO | PLAZA Integrative Orthology | long-day photoperiodism, flowering | AT2G13540 |
| GO:0031053 | ISO | PLAZA Integrative Orthology | primary miRNA processing | AT2G13540 |
| GO:0000394 | ISO | PLAZA Integrative Orthology | RNA splicing, via endonucleolytic cleavage and ligation | AT2G13540 |
| GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT2G13540 |
| GO:0045292 | IEA | GOA Database | mRNA cis splicing, via spliceosome | |
| GO:0045292 | IEA | InterPro | mRNA cis splicing, via spliceosome | |
| GO:0051028 | IEA | GOA Database | mRNA transport | |
| GO:0051028 | IEA | InterPro | mRNA transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | ISO | PLAZA Homology (enrichment) | RNA binding | HOM05D005600 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G13540 |
| GO:0000339 | IEA | GOA Database | RNA cap binding | |
| GO:0000339 | IEA | InterPro | RNA cap binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G13540 |
| GO:0005846 | IEA | GOA Database | nuclear cap binding complex | |
| GO:0005846 | IEA | InterPro | nuclear cap binding complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.1.3.1 | RNA processing.RNA 5'-end capping.CBP80-CBP20 mRNA Cap-Binding complex (CBC).component CBP80 |