Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20053 Utricularia gibba HOM05D000113 ORTHO05D013364 4.1e-72 275.0 180 100.0
MSTRG.19506 Avicennia marina HOM05D000113 ORTHO05D003010 1.6e-28 130.2 127 55.9
SGA_v2.0_scaffold62G21621 Striga asiatica HOM05D000113 ORTHO05D003010 1.4e-27 127.1 139 49.6
Rhsim03G0231700 Rhododendron simsii HOM05D000113 ORTHO05D003010 1.3e-25 120.6 136 51.5
Hma1.2p1_0785F.1_g217430 Hydrangea macrophylla HOM05D000113 ORTHO05D003010 2.8e-25 119.4 139 49.6
Lj4C294T4 Lonicera japonica HOM05D000113 ORTHO05D003010 3.7e-25 119.0 121 53.7
SalBow6G6328 Salvia bowleyana HOM05D000113 ORTHO05D003010 4.9e-25 118.6 110 55.5
VMungo0023G0001 Vigna mungo HOM05D000113 ORTHO05D013364 3.1e-24 115.9 138 47.8
FAN03G2693 Fragaria x ananassa HOM05D000113 ORTHO05D003010 1.2e-23 114.0 139 46.0
Glyma.14G217400 Glycine max HOM05D000113 ORTHO05D003010 2.0e-23 113.2 141 47.5
DCAR_011968 Daucus carota HOM05D000113 ORTHO05D003010 4.5e-23 112.1 134 52.2
FAN10G0181 Fragaria x ananassa HOM05D000113 ORTHO05D003010 4.5e-23 112.1 139 46.0
Hund06671 Selenicereus undatus HOM05D000113 ORTHO05D003010 4.5e-23 112.1 116 54.3
Actinidia25246 Actinidia chinensis HOM05D000113 ORTHO05D003010 7.8e-23 111.3 131 49.6
FvH4_4g07500 Fragaria vesca HOM05D000113 ORTHO05D003010 7.8e-23 111.3 132 47.7
FAN12G1473 Fragaria x ananassa HOM05D000113 ORTHO05D003010 7.8e-23 111.3 132 47.7
FAN17G0324 Fragaria x ananassa HOM05D000113 ORTHO05D003010 7.8e-23 111.3 141 46.1
MD09G1231900 Malus domestica HOM05D000113 ORTHO05D003010 7.8e-23 111.3 142 46.5
RcHm_v2.0_Chr1g0351781 Rosa chinensis HOM05D000113 ORTHO05D003010 1.0e-22 110.9 141 46.8
RcHm_v2.0_Chr4g0400041 Rosa chinensis HOM05D000113 ORTHO05D003010 1.0e-22 110.9 139 46.0
Ah.09g228140 Amaranthus hybridus HOM05D000113 ORTHO05D003010 1.3e-22 110.5 116 52.6
Oeu000323.1 Olea europaea HOM05D000113 ORTHO05D003010 1.7e-22 110.2 107 54.2
MD17G1229800 Malus domestica HOM05D000113 ORTHO05D003010 2.3e-22 109.8 125 48.0
FvH4_7g12750 Fragaria vesca HOM05D000113 ORTHO05D003010 2.9e-22 109.4 135 47.4
FAN06G1832 Fragaria x ananassa HOM05D000113 ORTHO05D003010 2.9e-22 109.4 135 47.4
Sabra12G0023400 Salix brachista HOM05D000113 ORTHO05D003010 2.9e-22 109.4 131 50.4
Sc18g0002170 Simmondsia chinensis HOM05D000113 ORTHO05D003010 2.9e-22 109.4 118 49.2
FAN07G0796 Fragaria x ananassa HOM05D000113 ORTHO05D003010 5.0e-22 108.6 140 45.7
Sopen07g019130 Solanum pennellii HOM05D000113 ORTHO05D003010 5.0e-22 108.6 114 50.0
CSS0015150 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D003010 8.6e-22 107.8 135 49.6
Lsat_1_v5_gn_7_36800 Lactuca sativa HOM05D000113 ORTHO05D003010 1.1e-21 107.5 130 47.7
Solyc07g039550.4 Solanum lycopersicum HOM05D000113 ORTHO05D003010 1.5e-21 107.1 113 49.6
HanXRQChr03g0060351 Helianthus annuus HOM05D000113 ORTHO05D003010 1.9e-21 106.7 133 46.6
Nitab4.5_0007115g0020 Nicotiana tabacum HOM05D000113 ORTHO05D003010 1.9e-21 106.7 112 50.9
Phvul.001G008600 Phaseolus vulgaris HOM05D000113 ORTHO05D003010 1.9e-21 106.7 138 44.9
Solyc01g110990.2 Solanum lycopersicum HOM05D000113 ORTHO05D003010 2.5e-21 106.3 113 49.6
Sopen01g053030 Solanum pennellii HOM05D000113 ORTHO05D003010 2.5e-21 106.3 113 49.6
TWI56G1163 Tripterygium wilfordii HOM05D000113 ORTHO05D003010 3.3e-21 105.9 115 48.7
Potri.012G034200 Populus trichocarpa HOM05D000113 ORTHO05D003010 4.3e-21 105.5 116 50.9
Rhsim02G0021600 Rhododendron simsii HOM05D000113 ORTHO05D003010 4.3e-21 105.5 123 50.4
arahy.Tifrunner.gnm1.ann1.XPB1EQ Arachis hypogaea HOM05D000113 ORTHO05D003010 7.3e-21 104.8 148 43.9
CSS0025931 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D003010 7.3e-21 104.8 114 50.0
Sabra15G0018900 Salix brachista HOM05D000113 ORTHO05D003010 9.5e-21 104.4 120 48.3
PGSC0003DMG400022045 Solanum tuberosum HOM05D000113 ORTHO05D003010 9.5e-21 104.4 108 50.9
TWI12G0166 Tripterygium wilfordii HOM05D000113 ORTHO05D003010 1.2e-20 104.0 113 47.8
Aqoxy1G02440 Aquilegia oxysepala HOM05D000113 ORTHO05D003010 2.1e-20 103.2 125 47.2
Cc06_g11510 Coffea canephora HOM05D000113 ORTHO05D003010 2.1e-20 103.2 115 50.4
TAR627G0817 Trochodendron aralioides HOM05D000113 ORTHO05D003010 2.1e-20 103.2 115 52.2
Lalb_Chr22g0354421 Lupinus albus HOM05D000113 ORTHO05D003010 4.7e-20 102.1 115 50.4
Nitab4.5_0000095g0200 Nicotiana tabacum HOM05D000113 ORTHO05D003010 4.7e-20 102.1 107 50.5
Potri.015G024400 Populus trichocarpa HOM05D000113 ORTHO05D003010 4.7e-20 102.1 117 48.7
QL02p011025 Quercus lobata HOM05D000113 ORTHO05D003010 4.7e-20 102.1 115 47.8
Migut.J00584 Erythranthe guttata HOM05D000113 ORTHO05D003010 6.1e-20 101.7 109 50.5
vmacro17253 Vaccinium macrocarpon HOM05D000113 ORTHO05D003010 6.1e-20 101.7 140 47.9
CiPaw.09G132800 Carya illinoinensis HOM05D000113 ORTHO05D003010 8.0e-20 101.3 115 47.0
CANSAT01G3128 Cannabis sativa HOM05D000113 ORTHO05D003010 1.4e-19 100.5 113 49.6
CAN.G588.10 Capsicum annuum HOM05D000113 ORTHO05D003010 1.4e-19 100.5 110 48.2
CiPaw.08G064400 Carya illinoinensis HOM05D000113 ORTHO05D003010 1.4e-19 100.5 115 47.0
MELO3C004343.2 Cucumis melo HOM05D000113 ORTHO05D003010 1.4e-19 100.5 115 47.8
SEGI_00895 Sequoiadendron giganteum HOM05D000113 ORTHO05D003010 1.4e-19 100.5 141 45.4
CDE08G1416 Ceratophyllum demersum HOM05D000113 ORTHO05D003010 4.0e-19 99.0 111 63.1
Nn1g04078 Nelumbo nucifera HOM05D000113 ORTHO05D003010 4.0e-19 99.0 110 50.9
EL10Ac8g19190 Beta vulgaris HOM05D000113 ORTHO05D003010 5.2e-19 98.6 111 50.5
Haze_22607 Corylus avellana HOM05D000113 ORTHO05D003010 6.8e-19 98.2 108 48.1
HPP92_019988 Vanilla planifolia HOM05D000113 ORTHO05D003010 6.8e-19 98.2 144 43.8
ECA234G4749 Erigeron canadensis HOM05D000113 ORTHO05D003010 8.9e-19 97.8 114 50.0
MBI07_g29113_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D003010 8.9e-19 97.8 112 49.1
TAR626G0761 Trochodendron aralioides HOM05D000113 ORTHO05D003010 1.5e-18 97.1 113 48.7
Cfa013925 Carpinus fangiana HOM05D000113 ORTHO05D003010 2.0e-18 96.7 107 47.7
Sed0017555 Sechium edule HOM05D000113 ORTHO05D003010 2.0e-18 96.7 115 47.0
ClCG02G016270 Citrullus lanatus HOM05D000113 ORTHO05D003010 2.6e-18 96.3 113 46.0
ATR0626G181 Amborella trichopoda HOM05D000113 ORTHO05D003010 3.4e-18 95.9 116 48.3
Dinv36775 Davidia involucrata HOM05D000113 ORTHO05D003010 4.4e-18 95.5 104 50.0
Prupe.2G077900 Prunus persica HOM05D000113 ORTHO05D003010 4.4e-18 95.5 112 46.4
PSO729G0096 Papaver somniferum HOM05D000113 ORTHO05D003010 7.5e-18 94.7 121 43.0
CDE02G3681 Ceratophyllum demersum HOM05D000113 ORTHO05D003010 1.7e-17 93.6 136 58.1
PSO513G0027 Papaver somniferum HOM05D000113 ORTHO05D003010 1.7e-17 93.6 110 49.1
PSO339G4002 Papaver somniferum HOM05D000113 ORTHO05D003010 2.2e-17 93.2 110 49.1
AagrBONN_evm.TU.Sc2ySwM_344.1233 Anthoceros agrestis HOM05D000113 ORTHO05D003010 2.9e-17 92.8 140 40.7
Mapoly0026s0003 Marchantia polymorpha HOM05D000113 ORTHO05D003010 3.7e-17 92.4 138 43.5
CsaV3_2G004480 Cucumis sativus L. HOM05D000113 ORTHO05D003010 6.4e-17 91.7 111 45.9
AUR62029051 Chenopodium quinoa HOM05D000113 ORTHO05D003010 8.3e-17 91.3 108 48.1
Manes.05G123500 Manihot esculenta HOM05D000113 ORTHO05D003010 1.1e-16 90.9 123 54.5
GSVIVG01029863001 Vitis vinifera HOM05D000113 ORTHO05D003010 1.4e-16 90.5 108 45.4
Glyma.17G256200 Glycine max HOM05D000113 ORTHO05D003010 1.8e-16 90.1 105 48.6
DCAR_024712 Daucus carota HOM05D000113 ORTHO05D003010 2.4e-16 89.7 131 56.5
Eucgr.F03979 Eucalyptus grandis HOM05D000113 ORTHO05D003010 4.1e-16 89.0 122 54.9
TWI36G1599 Tripterygium wilfordii HOM05D000113 ORTHO05D013364 4.1e-16 89.0 138 40.6
Sabra15G0021400 Salix brachista HOM05D000113 ORTHO05D003010 9.2e-16 87.8 97 45.4
CAN.G32.8 Capsicum annuum HOM05D000113 ORTHO05D003010 1.2e-15 87.4 81 53.1
Medtr1g114490 Medicago truncatula HOM05D000113 ORTHO05D003010 1.2e-15 87.4 77 58.4
Ca_12452_v3 Cicer arietinum L. HOM05D000113 ORTHO05D003010 1.6e-15 87.0 88 54.5
Ca_30040_v3 Cicer arietinum L. HOM05D000113 ORTHO05D013364 1.6e-15 87.0 88 54.5
Pp3c1_9270 Physcomitrium patens HOM05D000113 ORTHO05D003010 1.6e-15 87.0 144 36.8
TPR.G4128 Trifolium pratense HOM05D000113 ORTHO05D003010 1.6e-15 87.0 77 58.4
Aqoxy4G00851 Aquilegia oxysepala HOM05D000113 ORTHO05D003010 2.0e-15 86.7 105 64.8
Duzib235G1354 Durio zibethinus HOM05D000113 ORTHO05D003010 3.5e-15 85.9 93 48.4
TPR.G34355 Trifolium pratense HOM05D000113 ORTHO05D003010 5.9e-15 85.1 76 57.9
COL.COLO4_32032 Corchorus olitorius HOM05D000113 ORTHO05D003010 7.8e-15 84.7 90 51.1
Medtr1g023985 Medicago truncatula HOM05D000113 ORTHO05D003010 7.8e-15 84.7 93 49.5
Pp3c2_27130 Physcomitrium patens HOM05D000113 ORTHO05D003010 7.8e-15 84.7 140 36.4
Thecc.08G041100 Theobroma cacao HOM05D000113 ORTHO05D003010 7.8e-15 84.7 93 48.4
Ciclev10024740m.g Citrus clementina HOM05D000113 ORTHO05D003010 1.0e-14 84.3 93 51.6
Medtr1g023910 Medicago truncatula HOM05D000113 ORTHO05D013364 1.3e-14 84.0 93 49.5
Gohir.A05G112700 Gossypium hirsutum HOM05D000113 ORTHO05D003010 3.0e-14 82.8 87 49.4
Gohir.D05G113200 Gossypium hirsutum HOM05D000113 ORTHO05D003010 3.0e-14 82.8 87 49.4
Gorai.009G117300 Gossypium raimondii HOM05D000113 ORTHO05D003010 3.0e-14 82.8 87 49.4
Nitab4.5_0006053g0010 Nicotiana tabacum HOM05D000113 ORTHO05D003010 3.9e-14 82.4 83 51.8
Gorai.011G007600 Gossypium raimondii HOM05D000113 ORTHO05D003010 5.0e-14 82.0 79 54.4
arahy.Tifrunner.gnm1.ann1.00HR05 Arachis hypogaea HOM05D000113 ORTHO05D003010 6.6e-14 81.6 148 39.2
Ca_13404_v3 Cicer arietinum L. HOM05D000113 ORTHO05D003010 6.6e-14 81.6 86 51.2
HanXRQChr10g0319431 Helianthus annuus HOM05D000113 ORTHO05D003010 6.6e-14 81.6 80 52.5
Gohir.D10G006800 Gossypium hirsutum HOM05D000113 ORTHO05D003010 8.6e-14 81.3 79 54.4
Atru.chr3.768 Acer truncatum HOM05D000113 ORTHO05D013364 1.1e-13 80.9 77 51.9
AUR62033946 Chenopodium quinoa HOM05D000113 ORTHO05D003010 1.9e-13 80.1 103 42.7
COL.COLO4_17488 Corchorus olitorius HOM05D000113 ORTHO05D003010 1.9e-13 80.1 94 45.7
Haze_01701 Corylus avellana HOM05D000113 ORTHO05D003010 1.9e-13 80.1 124 36.3
arahy.Tifrunner.gnm1.ann1.XAV62A Arachis hypogaea HOM05D000113 ORTHO05D003010 2.5e-13 79.7 145 37.9
CARHR147560 Cardamine hirsuta HOM05D000113 ORTHO05D003010 2.5e-13 79.7 113 38.9
Cfa021361 Carpinus fangiana HOM05D000113 ORTHO05D003010 3.3e-13 79.3 128 36.7
Gohir.A10G006900 Gossypium hirsutum HOM05D000113 ORTHO05D003010 3.3e-13 79.3 79 51.9
Psat6g004240 Pisum sativum HOM05D000113 ORTHO05D003010 3.3e-13 79.3 77 55.8
Peaxi162Scf01000g00123 Petunia axillaris HOM05D000113 ORTHO05D003010 4.3e-13 79.0 82 48.8
Lj5g0023045 Lotus japonicus HOM05D000113 ORTHO05D003010 9.5e-13 77.8 86 51.2
Peaxi162Scf02085g00002 Petunia axillaris HOM05D000113 ORTHO05D003010 9.5e-13 77.8 81 48.1
ECA247G2105 Erigeron canadensis HOM05D000113 ORTHO05D003010 1.2e-12 77.4 132 39.4
Zm00001eb236680 Zea mays HOM05D000113 ORTHO05D003010 1.6e-12 77.0 118 50.8
BraA06t27112Z Brassica rapa HOM05D000113 ORTHO05D003010 2.1e-12 76.6 112 38.4
RcHm_v2.0_Chr5g0081521 Rosa chinensis HOM05D000113 ORTHO05D003010 2.1e-12 76.6 95 44.2
Carub.0005s0455 Capsella rubella HOM05D000113 ORTHO05D003010 3.6e-12 75.9 110 40.0
Haze_01972 Corylus avellana HOM05D000113 ORTHO05D003010 3.6e-12 75.9 81 45.7
Sc08g0008550 Simmondsia chinensis HOM05D000113 ORTHO05D003010 4.7e-12 75.5 121 42.1
Cfa005892 Carpinus fangiana HOM05D000113 ORTHO05D013364 6.2e-12 75.1 90 43.3
AL5G15350 Arabidopsis lyrata HOM05D000113 ORTHO05D003010 8.0e-12 74.7 110 39.1
AT3G26560 Arabidopsis thaliana HOM05D000113 ORTHO05D003010 8.0e-12 74.7 110 39.1
Ciclev10007378m.g Citrus clementina HOM05D000113 ORTHO05D003010 1.1e-11 74.3 109 36.7
TWI56G0919 Tripterygium wilfordii HOM05D000113 ORTHO05D003010 1.1e-11 74.3 132 39.4
VMungo1383G1423 Vigna mungo HOM05D000113 ORTHO05D003010 1.1e-11 74.3 137 35.0
CBR_g6734 Chara braunii HOM05D000113 ORTHO05D003010 1.4e-11 73.9 113 35.4
Thhalv10003563m.g Eutrema salsugineum HOM05D000113 ORTHO05D003010 2.3e-11 73.2 110 39.1
THA.LOC104811162 Tarenaya hassleriana HOM05D000113 ORTHO05D003010 2.3e-11 73.2 84 44.0
Phvul.001G264132 Phaseolus vulgaris HOM05D000113 ORTHO05D003010 4.0e-11 72.4 133 34.6
BcaC06g31065 Brassica carinata HOM05D000113 ORTHO05D003010 6.8e-11 71.6 110 37.3
A06p41930 Brassica napus HOM05D000113 ORTHO05D003010 6.8e-11 71.6 109 36.7
SEGI_20308 Sequoiadendron giganteum HOM05D000113 ORTHO05D003010 8.9e-11 71.2 113 40.7
Glyma.18G004000 Glycine max HOM05D000113 ORTHO05D003010 1.2e-10 70.9 75 48.0
BcaC06g33903 Brassica carinata HOM05D000113 ORTHO05D003010 1.5e-10 70.5 108 36.1
C07p35540 Brassica napus HOM05D000113 ORTHO05D003010 1.5e-10 70.5 108 36.1
BolC7t44078H Brassica oleracea HOM05D000113 ORTHO05D003010 1.5e-10 70.5 108 36.1
Os06g0343100 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D003010 2.6e-10 69.7 108 37.0
Sp2g15670 Schrenkiella parvula HOM05D000113 ORTHO05D003010 2.9e-09 66.2 109 34.9
FAN25G2665 Fragaria x ananassa HOM05D000113 ORTHO05D013364 4.9e-09 65.5 86 43.0
FvH4_3g44820 Fragaria vesca HOM05D000113 ORTHO05D003010 6.4e-09 65.1 86 43.0
FAN11G3170 Fragaria x ananassa HOM05D000113 ORTHO05D003010 6.4e-09 65.1 86 43.0
Zm00001eb036270 Zea mays HOM05D000113 ORTHO05D003010 6.4e-09 65.1 76 43.4
BcaB03g12756 Brassica carinata HOM05D000113 ORTHO05D003010 1.4e-08 63.9 110 34.5
FAN21G1970 Fragaria x ananassa HOM05D000113 ORTHO05D003010 1.4e-08 63.9 86 41.9
MD16G1254900 Malus domestica HOM05D000113 ORTHO05D003010 1.9e-08 63.5 116 32.8
Manes.04G050000 Manihot esculenta HOM05D000113 ORTHO05D003010 1.9e-08 63.5 75 42.7
BolC3t21019H Brassica oleracea HOM05D000113 ORTHO05D003010 2.4e-08 63.2 110 35.5
Aa31LG2G5990 Aethionema arabicum HOM05D000113 ORTHO05D003010 3.2e-08 62.8 79 40.5
Prupe.1G422500 Prunus persica HOM05D000113 ORTHO05D003010 4.1e-08 62.4 117 35.0
Zm00001eb049020 Zea mays HOM05D000113 ORTHO05D013364 5.4e-08 62.0 102 37.3
Migut.L01502 Erythranthe guttata HOM05D000113 ORTHO05D003010 1.2e-07 60.8 79 44.3
Lsat_1_v5_gn_7_2860 Lactuca sativa HOM05D000113 ORTHO05D013364 1.6e-07 60.5 96 39.6
PGR102G3075 Punica granatum HOM05D000113 ORTHO05D003010 1.6e-07 60.5 77 42.9
FAN16G1116 Fragaria x ananassa HOM05D000113 ORTHO05D003010 2.0e-07 60.1 135 33.3
MD15G1069000 Malus domestica HOM05D000113 ORTHO05D003010 2.0e-07 60.1 121 35.5
Zm00001eb374020 Zea mays HOM05D000113 ORTHO05D013364 2.0e-07 60.1 102 35.3
Zm00001eb394720 Zea mays HOM05D000113 ORTHO05D013364 2.0e-07 60.1 102 35.3
BraA08t33757Z Brassica rapa HOM05D000113 ORTHO05D003010 2.7e-07 59.7 80 41.2
Zm00001eb082090 Zea mays HOM05D000113 ORTHO05D013364 4.6e-07 58.9 102 36.3
Zm00001eb373810 Zea mays HOM05D006198 ORTHO05D008226 4.6e-07 58.9 102 36.3
Prupe.2G078300 Prunus persica HOM05D000113 ORTHO05D003010 7.8e-07 58.2 112 36.6
SMO117G0308 Selaginella moellendorffii HOM05D000113 ORTHO05D013364 7.8e-07 58.2 74 44.6
Zm00001eb243030 Zea mays HOM05D006198 ORTHO05D008226 7.8e-07 58.2 102 35.3
BcaC01g01004 Brassica carinata HOM05D000113 ORTHO05D003010 2.3e-06 56.6 111 34.2
C03p87170 Brassica napus HOM05D000113 ORTHO05D003010 2.3e-06 56.6 111 34.2
FAN22G0276 Fragaria x ananassa HOM05D000113 ORTHO05D013364 3.9e-06 55.8 83 41.0
Dinv42327 Davidia involucrata HOM05D000113 ORTHO05D003010 6.6e-06 55.1 52 59.6


User provided reference genes

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