Gene: Sopen01g053030

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g053030
  • Transcript Identifier Sopen01g053030.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 108252621-108256148 : positive

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g053030.1

Descriptions

  • Description ATP-dependent RNA helicase, putative | FUNCTIONS IN: in 6 functions | LOCATED IN: cytosol, mitochondrion | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Helicase-associated domain , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , Nucleic acid-binding, OB-fold , Domain of unknown function DUF1605 , Ribosomal protein S1, RNA-binding domain , Nucleic acid-binding, OB-fold-like , DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: RNA helicase family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc01g110990.2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
InterProhelicase activity
GO:0003724
IEA
InterProRNA helicase activity
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
InterPronucleic acid binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012340 Nucleic acid-binding, OB-fold
IPR001650 Helicase, C-terminal
IPR011709 Domain of unknown function DUF1605
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR007502 Helicase-associated domain
IPR044762 DHX8/ Prp22, DEXH-box helicase domain
IPR022967 RNA-binding domain, S1
IPR003029 S1 domain
IPR011545 DEAD/DEAH box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
35.1 not assigned.annotated