Gene: Solyc07g039550.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g039550.4
  • Transcript Identifier Solyc07g039550.4.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 47510459-47514238 : negative

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g039550.4.1
  • uniprot A0A3Q7H7U0
  • gene_id Solyc07g039550

Descriptions

  • Description RNA helicase DEAH-box21
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000390
IBA
GOA Databasespliceosomal complex disassembly
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0016070
IDA
Gene OntologyRNA metabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G26560
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IDA
Gene OntologyRNA helicase activity1
GO:0003724
IEA
InterProRNA helicase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G26560
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT3G26560
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G26560
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003029 S1 domain
IPR044762 DHX8/ Prp22, DEXH-box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR007502 Helicase-associated domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR012340 Nucleic acid-binding, OB-fold
IPR011545 DEAD/DEAH box helicase domain
IPR022967 RNA-binding domain, S1
IPR011709 Domain of unknown function DUF1605
Mapman id Description
35.1 not assigned.annotated