Gene: AUR62033946
General Information
Structural Information
- Species Chenopodium quinoa
- Gene Identifier AUR62033946
- Transcript Identifier AUR62033946-RA
- Gene Type Coding gene
- Location C_Quinoa_Scaffold_4191 : 484572-488949 : positive
Gene Family Information
- ID HOM05D000113
- #Genes/#Species 2932/100
- Phylogenetic origin
- ID ORTHO05D003010
- #Genes/#Species 249/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id AUR62033946.v1.0
- pacid 36293702
- uniprot A0A803MRP5
Descriptions
- Description At3g26560: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc01g110990.2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003724 | IEA | GOA Database | RNA helicase activity | |
| GO:0003724 | IEA | InterPro | RNA helicase activity | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G26560 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G26560 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT3G26560 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G26560 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR007502 | Helicase-associated domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR011709 | Domain of unknown function DUF1605 |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR003029 | S1 domain |
| IPR001650 | Helicase, C-terminal |
| IPR022967 | RNA-binding domain, S1 |
| IPR044762 | DHX8/ Prp22, DEXH-box helicase domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |