Gene: Pp3c1_9270

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c1_9270
  • Transcript Identifier Pp3c1_9270V3.1
  • Gene Type Coding gene
  • Location Chr01 : 6725015-6728674 : positive

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c1_9270V3.1
  • pacid 32966909
  • alias Phpat.001G037600
  • alias Pp1s38_83V6
  • uniprot A0A2K1L7K2

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc01g110990.2
GO:0000390
IBA
GOA Databasespliceosomal complex disassembly
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G26560
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IEA
InterProRNA helicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G26560
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT3G26560
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G26560
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044762 DHX8/ Prp22, DEXH-box helicase domain
IPR003029 S1 domain
IPR007502 Helicase-associated domain
IPR003593 AAA+ ATPase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR012340 Nucleic acid-binding, OB-fold
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011709 Domain of unknown function DUF1605
IPR022967 RNA-binding domain, S1
Mapman id Description
35.1 not assigned.annotated