Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T37YPL Arachis hypogaea HOM05D001007 ORTHO05D006705 3.3e-121 438.3 217 100.0
arahy.Tifrunner.gnm1.ann1.MGB2DA Arachis hypogaea HOM05D001007 ORTHO05D006705 3.3e-76 288.9 190 80.0
arahy.Tifrunner.gnm1.ann1.SSF8HC Arachis hypogaea HOM05D001007 ORTHO05D006705 4.7e-75 285.0 190 78.9
Glyma.18G067400 Glycine max HOM05D001007 ORTHO05D006705 1.7e-72 276.6 190 74.2
Lj6g0017433 Lotus japonicus HOM05D001007 ORTHO05D006705 2.7e-70 269.2 190 74.7
Phvul.006G063900 Phaseolus vulgaris HOM05D001007 ORTHO05D006705 3.5e-70 268.9 190 73.2
Ca_14892_v3 Cicer arietinum L. HOM05D001007 ORTHO05D006705 4.6e-70 268.5 190 75.3
Lalb_Chr20g0115061 Lupinus albus HOM05D001007 ORTHO05D006705 7.8e-70 267.7 190 74.7
VMungo0540G2128 Vigna mungo HOM05D001007 ORTHO05D006705 1.7e-69 266.5 190 72.6
TPR.G30104 Trifolium pratense HOM05D001007 ORTHO05D006705 5.1e-69 265.0 190 74.2
Medtr3g462290 Medicago truncatula HOM05D001007 ORTHO05D006705 1.9e-68 263.1 207 68.6
Psat5g162480 Pisum sativum HOM05D001007 ORTHO05D006705 5.6e-68 261.5 190 72.1
Haze_24239 Corylus avellana HOM05D001007 ORTHO05D006705 7.6e-65 251.1 190 68.9
Ciclev10027687m.g Citrus clementina HOM05D001007 ORTHO05D006705 8.4e-64 247.7 190 68.4
GSVIVG01024809001 Vitis vinifera HOM05D001007 ORTHO05D006705 1.4e-63 246.9 190 67.4
Cfa011634 Carpinus fangiana HOM05D001007 ORTHO05D006705 2.4e-63 246.1 190 68.4
Prupe.6G062900 Prunus persica HOM05D001007 ORTHO05D006705 2.4e-63 246.1 188 67.6
QL01p027375 Quercus lobata HOM05D001007 ORTHO05D006705 2.4e-63 246.1 191 69.6
QL93p2004_0004 Quercus lobata HOM05D001007 ORTHO05D006705 2.4e-63 246.1 191 69.6
Dinv28598 Davidia involucrata HOM05D001007 ORTHO05D006705 3.2e-63 245.7 190 66.8
Duzib170G0956 Durio zibethinus HOM05D001007 ORTHO05D006705 7.1e-63 244.6 190 66.3
Thecc.09G307300 Theobroma cacao HOM05D001007 ORTHO05D006705 7.1e-63 244.6 190 66.3
CAN.G538.2 Capsicum annuum HOM05D001007 ORTHO05D006705 2.1e-62 243.0 190 66.3
Gohir.A03G048400 Gossypium hirsutum HOM05D001007 ORTHO05D006705 2.7e-62 242.7 190 65.8
MD11G1082500 Malus domestica HOM05D001007 ORTHO05D006705 4.6e-62 241.9 190 65.8
DCAR_015643 Daucus carota HOM05D001007 ORTHO05D006705 6.0e-62 241.5 207 62.8
COL.COLO4_19087 Corchorus olitorius HOM05D001007 ORTHO05D006705 1.0e-61 240.7 190 65.8
FAN21G1509 Fragaria x ananassa HOM05D001007 ORTHO05D006705 1.0e-61 240.7 188 67.0
Lj2A1128G41 Lonicera japonica HOM05D001007 ORTHO05D006705 1.0e-61 240.7 190 66.3
Manes.01G165300 Manihot esculenta HOM05D001007 ORTHO05D006705 1.0e-61 240.7 190 65.8
TWI79G0297 Tripterygium wilfordii HOM05D001007 ORTHO05D006705 1.0e-61 240.7 188 64.9
FAN11G3969 Fragaria x ananassa HOM05D001007 ORTHO05D006705 1.3e-61 240.4 188 67.0
Lsat_1_v5_gn_4_65500 Lactuca sativa HOM05D001007 ORTHO05D006705 1.3e-61 240.4 206 62.1
FAN25G0707 Fragaria x ananassa HOM05D001007 ORTHO05D006705 1.7e-61 240.0 188 67.0
Gorai.003G125100 Gossypium raimondii HOM05D001007 ORTHO05D006705 1.7e-61 240.0 209 61.7
Sopen06g001970 Solanum pennellii HOM05D001007 ORTHO05D006705 1.7e-61 240.0 190 66.3
Ah.08g220450 Amaranthus hybridus HOM05D001007 ORTHO05D006705 2.3e-61 239.6 190 65.8
Gohir.D03G118700 Gossypium hirsutum HOM05D001007 ORTHO05D006705 2.3e-61 239.6 189 65.6
Potri.009G041200 Populus trichocarpa HOM05D001007 ORTHO05D006705 2.3e-61 239.6 190 66.3
Migut.D00864 Erythranthe guttata HOM05D001007 ORTHO05D006705 3.0e-61 239.2 190 65.8
FvH4_3g37880 Fragaria vesca HOM05D001007 ORTHO05D006705 3.0e-61 239.2 188 66.5
Nitab4.5_0000880g0030 Nicotiana tabacum HOM05D001007 ORTHO05D006705 5.1e-61 238.4 211 59.7
THA.LOC104814901 Tarenaya hassleriana HOM05D001007 ORTHO05D006705 5.1e-61 238.4 190 63.7
CANSAT54G2449 Cannabis sativa HOM05D001007 ORTHO05D006705 8.6e-61 237.7 207 61.8
HanXRQChr10g0294221 Helianthus annuus HOM05D001007 ORTHO05D006705 8.6e-61 237.7 206 62.6
MD03G1077900 Malus domestica HOM05D001007 ORTHO05D006705 8.6e-61 237.7 190 64.2
Sc12g0000990 Simmondsia chinensis HOM05D001007 ORTHO05D006705 8.6e-61 237.7 190 63.7
ECA234G1277 Erigeron canadensis HOM05D001007 ORTHO05D006705 1.9e-60 236.5 206 60.7
Peaxi162Scf00842g00018 Petunia axillaris HOM05D001007 ORTHO05D006705 3.3e-60 235.7 214 57.9
RcHm_v2.0_Chr5g0068091 Rosa chinensis HOM05D001007 ORTHO05D006705 4.3e-60 235.3 188 64.9
CiPaw.13G082700 Carya illinoinensis HOM05D001007 ORTHO05D006705 7.3e-60 234.6 190 66.8
Cc01_g13740 Coffea canephora HOM05D001007 ORTHO05D006705 7.3e-60 234.6 190 64.7
Nn2g11355 Nelumbo nucifera HOM05D001007 ORTHO05D006705 9.6e-60 234.2 190 63.7
Cpa.g.sc112.72 Carica papaya HOM05D001007 ORTHO05D006705 3.6e-59 232.3 190 63.7
EL10Ac7g16109 Beta vulgaris HOM05D001007 ORTHO05D006705 6.2e-59 231.5 190 63.7
Rhsim13G0073900 Rhododendron simsii HOM05D001007 ORTHO05D006705 6.2e-59 231.5 190 62.6
SalBow6G7021 Salvia bowleyana HOM05D001007 ORTHO05D006705 6.2e-59 231.5 190 63.7
CSS0032887 Camellia sinensis var. sinensis HOM05D001007 ORTHO05D006705 1.1e-58 230.7 190 63.7
A06p20600 Brassica napus HOM05D001007 ORTHO05D006705 2.4e-58 229.6 190 62.6
C03p71130 Brassica napus HOM05D001007 ORTHO05D006705 2.4e-58 229.6 190 62.6
BolC3t19398H Brassica oleracea HOM05D001007 ORTHO05D006705 2.4e-58 229.6 190 62.6
BraA06t25139Z Brassica rapa HOM05D001007 ORTHO05D006705 2.4e-58 229.6 190 62.6
Eucgr.B02279 Eucalyptus grandis HOM05D001007 ORTHO05D006705 3.1e-58 229.2 190 63.2
Sabra09G0029000 Salix brachista HOM05D001007 ORTHO05D006705 4.0e-58 228.8 190 64.2
TAR369G0542 Trochodendron aralioides HOM05D001007 ORTHO05D006705 4.0e-58 228.8 207 58.5
Aa31LG4G15900 Aethionema arabicum HOM05D001007 ORTHO05D006705 5.2e-58 228.4 190 63.7
AT3G46960 Arabidopsis thaliana HOM05D001007 ORTHO05D006705 5.2e-58 228.4 190 62.6
CARHR155590 Cardamine hirsuta HOM05D001007 ORTHO05D006705 5.2e-58 228.4 190 61.6
Thhalv10010069m.g Eutrema salsugineum HOM05D001007 ORTHO05D006705 6.9e-58 228.0 190 62.1
Aqoxy1G00722 Aquilegia oxysepala HOM05D001007 ORTHO05D006705 8.9e-58 227.6 214 59.8
Carub.0005s1318 Capsella rubella HOM05D001007 ORTHO05D006705 2.0e-57 226.5 207 57.0
AL5G26180 Arabidopsis lyrata HOM05D001007 ORTHO05D006705 2.6e-57 226.1 190 61.6
SGA_v2.0_scaffold20G09308 Striga asiatica HOM05D001007 ORTHO05D006705 5.8e-57 224.9 190 64.2
Atru.chr3.4061 Acer truncatum HOM05D001007 ORTHO05D006705 7.6e-57 224.6 190 62.1
AUR62001703 Chenopodium quinoa HOM05D001007 ORTHO05D006705 1.3e-56 223.8 191 62.8
Sp5g14780 Schrenkiella parvula HOM05D001007 ORTHO05D006705 1.3e-56 223.8 190 61.6
Hma1.2p1_0227F.1_g096160 Hydrangea macrophylla HOM05D001007 ORTHO05D006705 1.7e-56 223.4 203 59.6
PSO339G3632 Papaver somniferum HOM05D001007 ORTHO05D006705 1.7e-56 223.4 190 63.2
Actinidia25131 Actinidia chinensis HOM05D001007 ORTHO05D006705 6.4e-56 221.5 190 61.1
vmacro02999 Vaccinium macrocarpon HOM05D001007 ORTHO05D006705 8.4e-56 221.1 189 61.9
PSO384G0462 Papaver somniferum HOM05D001007 ORTHO05D006705 1.1e-55 220.7 190 62.1
MSTRG.18565 Avicennia marina HOM05D001007 ORTHO05D006705 1.4e-55 220.3 190 60.0
HPP92_015340 Vanilla planifolia HOM05D001007 ORTHO05D006705 1.9e-55 219.9 190 61.6
MBI05_g03442_MAGBIO Magnolia biondii HOM05D001007 ORTHO05D006705 2.4e-55 219.5 214 55.1
Sed0027946 Sechium edule HOM05D001007 ORTHO05D006705 9.3e-55 217.6 190 61.6
MELO3C020571.2 Cucumis melo HOM05D001007 ORTHO05D006705 1.2e-54 217.2 190 62.6
CsaV3_1G035960 Cucumis sativus L. HOM05D001007 ORTHO05D006705 1.2e-54 217.2 190 62.1
PGR102G0557 Punica granatum HOM05D001007 ORTHO05D006705 1.6e-54 216.9 190 60.0
ATR0618G385 Amborella trichopoda HOM05D001007 ORTHO05D006705 6.6e-53 211.5 182 59.9
Zm00001eb232660 Zea mays HOM05D001007 ORTHO05D006705 2.0e-49 199.9 207 52.7
Oeu035015.2 Olea europaea HOM05D001007 ORTHO05D006705 6.0e-46 188.3 306 40.8
arahy.Tifrunner.gnm1.ann1.QT3R4M Arachis hypogaea HOM05D001007 ORTHO05D006705 6.7e-45 184.9 106 88.7
CDE07G0187 Ceratophyllum demersum HOM05D001007 ORTHO05D006705 4.3e-44 182.2 166 60.2
FAN16G3439 Fragaria x ananassa HOM05D001007 ORTHO05D006705 1.8e-42 176.8 117 74.4
ClCG03G000980 Citrullus lanatus HOM05D001007 ORTHO05D006705 8.4e-40 167.9 338 36.1
Mapoly0005s0056 Marchantia polymorpha HOM05D001007 ORTHO05D006705 2.3e-37 159.8 183 48.6
AagrBONN_evm.TU.Sc2ySwM_228.606 Anthoceros agrestis HOM05D001007 ORTHO05D006705 5.8e-33 145.2 207 43.5
AagrBONN_evm.TU.Sc2ySwM_228.608 Anthoceros agrestis HOM05D001007 ORTHO05D006705 5.8e-33 145.2 207 43.5
SHI38243 Sapria himalayana HOM05D001007 ORTHO05D006705 2.2e-32 143.3 184 45.1
Pp3c20_11040 Physcomitrium patens HOM05D001007 ORTHO05D006705 1.4e-31 140.6 198 42.9
FAN21G2130 Fragaria x ananassa HOM05D001007 ORTHO05D006705 2.3e-29 133.3 113 60.2
SMO364G0835 Selaginella moellendorffii HOM05D001007 ORTHO05D006705 5.1e-29 132.1 185 40.0
SEGI_21548 Sequoiadendron giganteum HOM05D001007 ORTHO05D006705 1.9e-28 130.2 135 50.4
BcaNung06914 Brassica carinata HOM05D001007 ORTHO05D006705 1.0e-13 81.3 84 53.6
MCO07G050 Micromonas commoda HOM05D001007 ORTHO05D006705 6.7e-13 78.6 92 42.4
Nn4g26000 Nelumbo nucifera HOM05D000001 ORTHO05D000501 1.5e-12 77.4 56 71.4
Nn1g01266 Nelumbo nucifera HOM05D001007 ORTHO05D006705 2.6e-12 76.6 51 78.4
CAN.G2832.1 Capsicum annuum HOM05D001007 ORTHO05D006705 1.7e-11 73.9 62 64.5
CBR_g8252 Chara braunii HOM05D001007 ORTHO05D006705 2.8e-11 73.2 128 32.8
PGSC0003DMG403020840 Solanum tuberosum HOM05D001007 ORTHO05D006705 3.7e-11 72.8 62 64.5
Psat1g148960 Pisum sativum HOM05D000399 ORTHO05D002571 1.8e-10 70.5 50 72.0
Peaxi162Scf00216g00141 Petunia axillaris HOM05D001007 ORTHO05D006705 2.4e-10 70.1 61 60.7
ATR0626G366 Amborella trichopoda HOM05D001007 ORTHO05D002932 1.7e-08 63.9 144 27.8
TWI32G0842 Tripterygium wilfordii HOM05D001007 ORTHO05D002932 2.2e-08 63.5 148 29.7
Cre11.g482483 Chlamydomonas reinhardtii HOM05D001007 ORTHO05D006705 3.8e-08 62.8 114 31.6
PSO063G7144 Papaver somniferum HOM05D001007 ORTHO05D002932 3.8e-08 62.8 111 32.4
CDE04G2032 Ceratophyllum demersum HOM05D001007 ORTHO05D006705 5.0e-08 62.4 82 47.6
Haze_26167 Corylus avellana HOM05D001007 ORTHO05D006705 6.5e-08 62.0 140 28.6
PSO170G5833 Papaver somniferum HOM05D001007 ORTHO05D002932 6.5e-08 62.0 111 32.4
Aqoxy7G02671 Aquilegia oxysepala HOM05D001007 ORTHO05D002932 1.1e-07 61.2 111 32.4
CDE07G1513 Ceratophyllum demersum HOM05D001007 ORTHO05D002932 1.4e-07 60.8 110 32.7
Nn5g27075 Nelumbo nucifera HOM05D001007 ORTHO05D002932 1.4e-07 60.8 111 33.3
HPP92_020237 Vanilla planifolia HOM05D001007 ORTHO05D002932 1.4e-07 60.8 149 28.2
Peaxi162Scf00006g03312 Petunia axillaris HOM05D001007 ORTHO05D002932 3.2e-07 59.7 168 28.0
CANSAT01G0746 Cannabis sativa HOM05D001007 ORTHO05D002932 4.2e-07 59.3 127 27.6
unitig_22.g6570 Utricularia gibba HOM05D001007 ORTHO05D002932 4.2e-07 59.3 111 33.3
Cfa020741 Carpinus fangiana HOM05D001007 ORTHO05D002932 5.5e-07 58.9 178 27.0
Nitab4.5_0005105g0010 Nicotiana tabacum HOM05D001007 ORTHO05D002932 7.2e-07 58.5 128 28.9
Os11g0176200 Oryza sativa ssp. japonica HOM05D001007 ORTHO05D002932 7.2e-07 58.5 105 31.4
CAN.G106.8 Capsicum annuum HOM05D001007 ORTHO05D002932 9.4e-07 58.2 94 35.1
Hma1.2p1_0263F.1_g105460 Hydrangea macrophylla HOM05D001007 ORTHO05D002932 9.4e-07 58.2 128 28.1
MBI16_g37217_MAGBIO Magnolia biondii HOM05D001007 ORTHO05D002932 9.4e-07 58.2 111 29.7
Nitab4.5_0005753g0010 Nicotiana tabacum HOM05D001007 ORTHO05D002932 9.4e-07 58.2 128 28.9
TAR383G0411 Trochodendron aralioides HOM05D001007 ORTHO05D002932 9.4e-07 58.2 94 34.0
Migut.J00836 Erythranthe guttata HOM05D001007 ORTHO05D002932 1.2e-06 57.8 128 28.9
Oeu062952.1 Olea europaea HOM05D001007 ORTHO05D002932 1.2e-06 57.8 127 28.3
Psat7g021600 Pisum sativum HOM05D001007 ORTHO05D002932 1.2e-06 57.8 93 34.4
GSVIVG01032255001 Vitis vinifera HOM05D001007 ORTHO05D002932 1.2e-06 57.8 128 28.1
Zm00001eb337140 Zea mays HOM05D001007 ORTHO05D002932 1.2e-06 57.8 105 31.4
AL3G43950 Arabidopsis lyrata HOM05D001007 ORTHO05D002932 1.6e-06 57.4 94 34.0
AT2G06990 Arabidopsis thaliana HOM05D001007 ORTHO05D002932 1.6e-06 57.4 148 29.7
Carub.0003s2734 Capsella rubella HOM05D001007 ORTHO05D002932 1.6e-06 57.4 94 34.0
Duzib170G0417 Durio zibethinus HOM05D001007 ORTHO05D002932 1.6e-06 57.4 94 34.0
MSTRG.19396 Avicennia marina HOM05D001007 ORTHO05D002932 2.1e-06 57.0 128 28.1
Cc00_g00180 Coffea canephora HOM05D001007 ORTHO05D002932 2.1e-06 57.0 94 35.1
Haze_19057 Corylus avellana HOM05D001007 ORTHO05D002932 2.1e-06 57.0 178 26.4
HanXRQChr12g0359191 Helianthus annuus HOM05D001007 ORTHO05D002932 2.1e-06 57.0 128 28.1
THA.LOC104808911 Tarenaya hassleriana HOM05D001007 ORTHO05D002932 2.1e-06 57.0 84 34.5
TAR225G0002 Trochodendron aralioides HOM05D001007 ORTHO05D002932 2.1e-06 57.0 178 27.0
A05p39390 Brassica napus HOM05D001007 ORTHO05D002932 2.7e-06 56.6 132 31.1
BraA05t22720Z Brassica rapa HOM05D001007 ORTHO05D002932 2.7e-06 56.6 132 31.1
Cfa026548 Carpinus fangiana HOM05D001007 ORTHO05D006705 2.7e-06 56.6 116 27.6
Manes.18G138900 Manihot esculenta HOM05D001007 ORTHO05D002932 2.7e-06 56.6 79 38.0
Solyc12g017860.3 Solanum lycopersicum HOM05D001007 ORTHO05D002932 2.7e-06 56.6 184 26.6
Sopen12g008680 Solanum pennellii HOM05D001007 ORTHO05D002932 2.7e-06 56.6 184 26.6
Lju50A17G32 Lonicera japonica HOM05D001007 ORTHO05D002932 3.6e-06 56.2 103 32.0
Lj4g0027172 Lotus japonicus HOM05D001007 ORTHO05D002932 3.6e-06 56.2 148 28.4
Oeu028825.1 Olea europaea HOM05D001007 ORTHO05D002932 3.6e-06 56.2 94 34.0
Rhsim07G0245300 Rhododendron simsii HOM05D001007 ORTHO05D002932 3.6e-06 56.2 97 32.0
C05p58420 Brassica napus HOM05D001007 ORTHO05D002932 4.7e-06 55.8 94 33.0
BolC5t34494H Brassica oleracea HOM05D001007 ORTHO05D002932 4.7e-06 55.8 94 33.0
Cfa022030 Carpinus fangiana HOM05D001007 ORTHO05D002932 4.7e-06 55.8 178 25.8
ClCG11G011450 Citrullus lanatus HOM05D001007 ORTHO05D002932 4.7e-06 55.8 134 31.3
Thhalv10019987m.g Eutrema salsugineum HOM05D001007 ORTHO05D002932 4.7e-06 55.8 94 33.0
Rhsim07G0245200 Rhododendron simsii HOM05D001007 ORTHO05D002932 4.7e-06 55.8 94 34.0
Sp3g08000 Schrenkiella parvula HOM05D001007 ORTHO05D002932 4.7e-06 55.8 94 33.0
Sed0020596 Sechium edule HOM05D001007 ORTHO05D002932 4.7e-06 55.8 134 31.3
CSS0018446 Camellia sinensis var. sinensis HOM05D001007 ORTHO05D002932 6.1e-06 55.5 128 26.6
CARHR084080 Cardamine hirsuta HOM05D001007 ORTHO05D002932 6.1e-06 55.5 94 33.0
Dinv12607 Davidia involucrata HOM05D001007 ORTHO05D002932 6.1e-06 55.5 128 27.3
Lalb_Chr05g0223741 Lupinus albus HOM05D001007 ORTHO05D002932 6.1e-06 55.5 148 27.7
Medtr8g101340 Medicago truncatula HOM05D001007 ORTHO05D002932 6.1e-06 55.5 141 27.7
TPR.G25490 Trifolium pratense HOM05D001007 ORTHO05D002932 6.1e-06 55.5 111 31.5
Glyma.08G027700 Glycine max HOM05D001007 ORTHO05D002932 7.9e-06 55.1 127 27.6
Gohir.D13G185200 Gossypium hirsutum HOM05D001007 ORTHO05D002932 7.9e-06 55.1 94 34.0
HanXRQChr10g0309581 Helianthus annuus HOM05D001007 ORTHO05D002932 7.9e-06 55.1 128 26.6
Solyc05g047520.4 Solanum lycopersicum HOM05D001007 ORTHO05D002932 7.9e-06 55.1 94 34.0
Sopen05g027830 Solanum pennellii HOM05D001007 ORTHO05D002932 7.9e-06 55.1 94 34.0
PGSC0003DMG400013698 Solanum tuberosum HOM05D001007 ORTHO05D002932 7.9e-06 55.1 94 34.0


User provided reference genes

Program Settings