Gene: Pp3c20_11040

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c20_11040
  • Transcript Identifier Pp3c20_11040V3.1
  • Gene Type Coding gene
  • Location Chr20 : 6973714-6984716 : negative

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c20_11040V3.1
  • pacid 32947775
  • alias Pp1s406_14V6
  • alias Phypa_227295
  • alias Phpat.020G045200
  • uniprot A0A2K1IUW9

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070478
IBA
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
GO:0000292
IEA
GOA DatabaseRNA fragment catabolic process
GO:0016441
IEA
GOA Databaseposttranscriptional gene silencing
GO:0006813
IEA
GOA Databasepotassium ion transport
GO:0035864
IEA
GOA Databaseresponse to potassium ion
GO:1904278
IEA
GOA Databasepositive regulation of wax biosynthetic process
GO:0090065
IEA
GOA Databaseregulation of production of siRNA involved in RNA interference
GO:0006401
IBA
IEA
GOA DatabaseRNA catabolic process
GO:0006401
IEA
InterProRNA catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IEA
InterProRNA helicase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005773
IEA
GOA Databasevacuole
GO:0055087
IBA
IEA
GOA DatabaseSki complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR016438 ATP-dependent RNA helicase Ski2-like
IPR025696 rRNA-processing arch domain
IPR011545 DEAD/DEAH box helicase domain
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR040801 Ski2, N-terminal domain
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
Mapman id Description
16.4.1.2.6.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.RNA helicase component SKI2